RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 QKIQ96PU8 341 aaKnown RBP eCLIP9.19□□□□□ -0.941e-9■■■■■ 189.5
CCDC47-207ENST00000612558 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.54□□□□□ -1.045e-6■■■■■ 55.7
CCDC47-207ENST00000612558 SND1Q7KZF4 910 aaKnown RBP eCLIP9.27□□□□□ -0.931e-7■■■■■ 30.1
CCDC47-207ENST00000612558 SF3B4Q15427 424 aaKnown RBP eCLIP7.8□□□□□ -1.168e-19■■■■■ 28.8
CCDC47-207ENST00000612558 U2AF2P26368 475 aaKnown RBP eCLIP10.3□□□□□ -0.763e-7■■■■□ 26.6
CCDC47-207ENST00000612558 RBM22Q9NW64 420 aaKnown RBP eCLIP9.08□□□□□ -0.967e-6■■■■□ 24.6
CCDC47-207ENST00000612558 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.69□□□□□ -1.025e-7■■■■□ 24.2
CCDC47-207ENST00000612558 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.31□□□□□ -0.922e-10■■■■□ 20.1
CCDC47-207ENST00000612558 RPS3P23396 243 aaKnown RBP eCLIP8.84□□□□□ -0.997e-10■■■■□ 20.1
CCDC47-207ENST00000612558 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.18□□□□□ -0.462e-8■■■□□ 18.3
CCDC47-207ENST00000612558 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.14□□□□□ -1.276e-7■■■□□ 18.2
CCDC47-207ENST00000612558 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.98□□□□□ -0.974e-12■■■□□ 17
CCDC47-207ENST00000612558 AQRO60306 1485 aaKnown RBP eCLIP14.04□□□□□ -0.168e-8■■■□□ 15.3
CCDC47-207ENST00000612558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.59■□□□□ 0.253e-7■■□□□ 14.2
CCDC47-207ENST00000612558 FXR2P51116 673 aaKnown RBP eCLIP14.42□□□□□ -0.16e-8■■□□□ 13.1
CCDC47-207ENST00000612558 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.41□□□□□ -0.93e-7■■□□□ 12.4
CCDC47-207ENST00000612558 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.82□□□□□ -0.846e-9■■□□□ 12
CCDC47-207ENST00000612558 PPIGQ13427 754 aaKnown RBP eCLIP9.24□□□□□ -0.931e-10■■□□□ 11.6
CCDC47-207ENST00000612558 ILF3Q12906 894 aaKnown RBP eCLIP8.58□□□□□ -1.048e-6■■□□□ 11.6
CCDC47-207ENST00000612558 ZNF622Q969S3 477 aaKnown RBP eCLIP10.58□□□□□ -0.721e-7■□□□□ 10.2
CCDC47-207ENST00000612558 PUM1Q14671 1186 aaKnown RBP eCLIP8.31□□□□□ -1.081e-6■□□□□ 9.6
CCDC47-207ENST00000612558 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.69□□□□□ -0.73e-6■□□□□ 8.5
CCDC47-207ENST00000612558 EFTUD2Q15029 972 aaKnown RBP eCLIP9.03□□□□□ -0.968e-6■□□□□ 8.1
Retrieved 23 of 23 RNA–protein pairs in 12.8 ms