RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 IRX6P78412 446 aaPredicted RBP23.44■■□□□ 1.34
SMARCA4-215ENST00000590574 SLC4A1APQ9BWU0 796 aaKnown RBP23.43■■□□□ 1.34
SMARCA4-215ENST00000590574 ATAD2BQ9ULI0 1458 aa23.41■■□□□ 1.34
SMARCA4-215ENST00000590574 FHAD1B1AJZ9 1412 aa23.4■■□□□ 1.34
SMARCA4-215ENST00000590574 EIF4G2P78344 907 aaKnown RBP eCLIP23.4■■□□□ 1.34
SMARCA4-215ENST00000590574 MRS2Q9HD23 443 aa23.4■■□□□ 1.34
SMARCA4-215ENST00000590574 SETD5Q9C0A6 1442 aa23.38■■□□□ 1.33
SMARCA4-215ENST00000590574 RAB3GAP2Q9H2M9 1393 aa23.35■■□□□ 1.33
SMARCA4-215ENST00000590574 DHX57Q6P158 1386 aaKnown RBP23.3■■□□□ 1.32
SMARCA4-215ENST00000590574 ANP32AP39687 249 aaKnown RBP23.3■■□□□ 1.32
SMARCA4-215ENST00000590574 TIMELESSQ9UNS1 1208 aa23.25■■□□□ 1.31
SMARCA4-215ENST00000590574 ARHGAP35Q9NRY4 1499 aa23.24■■□□□ 1.31
SMARCA4-215ENST00000590574 TMC1Q8TDI8 760 aa23.24■■□□□ 1.31
SMARCA4-215ENST00000590574 NPM2Q86SE8 214 aaKnown RBP23.21■■□□□ 1.31
SMARCA4-215ENST00000590574 SALL2Q9Y467 1007 aaPredicted RBP23.2■■□□□ 1.31
SMARCA4-215ENST00000590574 KDM2AQ9Y2K7 1162 aa23.2■■□□□ 1.3
SMARCA4-215ENST00000590574 CCDC136Q96JN2 1154 aa23.19■■□□□ 1.3
SMARCA4-215ENST00000590574 ANP32EQ9BTT0 268 aa23.16■■□□□ 1.3
SMARCA4-215ENST00000590574 KIF21BO75037 1637 aa23.16■■□□□ 1.3
SMARCA4-215ENST00000590574 CCER2I3L3R5 266 aa23.15■■□□□ 1.3
SMARCA4-215ENST00000590574 TSPY4P0CV99 314 aa23.12■■□□□ 1.29
SMARCA4-215ENST00000590574 TSPY10P0CW01 314 aa23.12■■□□□ 1.29
SMARCA4-215ENST00000590574 CHMP7Q8WUX9 453 aaPredicted RBP23.11■■□□□ 1.29
SMARCA4-215ENST00000590574 SYNJ1O43426 1573 aa23.1■■□□□ 1.29
SMARCA4-215ENST00000590574 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.1■■□□□ 1.292e-8■■■□□ 17.8
SMARCA4-215ENST00000590574 EIF4G1Q04637 1599 aaKnown RBP23.09■■□□□ 1.29
SMARCA4-215ENST00000590574 FHOD3Q2V2M9 1422 aa23.06■■□□□ 1.28
SMARCA4-215ENST00000590574 CANXP27824 592 aaKnown RBP23.06■■□□□ 1.28
SMARCA4-215ENST00000590574 PPP1R15AO75807 674 aaPredicted RBP23.06■■□□□ 1.28
SMARCA4-215ENST00000590574 SENP3-EIF4A1A0A087X0R7 540 aa23.05■■□□□ 1.28
SMARCA4-215ENST00000590574 KCNH8Q96L42 1107 aa23.05■■□□□ 1.28
SMARCA4-215ENST00000590574 CFDP1Q9UEE9 299 aaPredicted RBP23.04■■□□□ 1.28
SMARCA4-215ENST00000590574 CADPSQ9ULU8 1353 aa23.03■■□□□ 1.28
SMARCA4-215ENST00000590574 HSPA5P11021 654 aaKnown RBP23.02■■□□□ 1.28
SMARCA4-215ENST00000590574 NBR1Q14596 966 aa23.01■■□□□ 1.27
SMARCA4-215ENST00000590574 FMN1Q68DA7 1419 aa23.01■■□□□ 1.27
SMARCA4-215ENST00000590574 TSHZ2Q9NRE2 1034 aa22.98■■□□□ 1.27
SMARCA4-215ENST00000590574 PPP4R2Q9NY27 417 aa22.97■■□□□ 1.27
SMARCA4-215ENST00000590574 ZBTB47Q9UFB7 747 aaPredicted RBP22.96■■□□□ 1.27
SMARCA4-215ENST00000590574 PLEKHD1A6NEE1 506 aa22.95■■□□□ 1.27
SMARCA4-215ENST00000590574 TDRD9Q8NDG6 1382 aaKnown RBP22.95■■□□□ 1.26
SMARCA4-215ENST00000590574 FOXD1Q16676 465 aa22.95■■□□□ 1.26
SMARCA4-215ENST00000590574 CARD11Q9BXL7 1154 aa22.93■■□□□ 1.26
SMARCA4-215ENST00000590574 RBM19Q9Y4C8 960 aaKnown RBP22.91■■□□□ 1.26
SMARCA4-215ENST00000590574 IGF1RP08069 1367 aa22.91■■□□□ 1.26
SMARCA4-215ENST00000590574 ARAP1Q96P48 1450 aa22.89■■□□□ 1.25
SMARCA4-215ENST00000590574 RGL3Q3MIN7 710 aa22.88■■□□□ 1.25
SMARCA4-215ENST00000590574 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
SMARCA4-215ENST00000590574 B4GALNT3Q6L9W6 998 aa22.87■■□□□ 1.25
SMARCA4-215ENST00000590574 MPHOSPH9Q99550 1183 aa22.87■■□□□ 1.25
SMARCA4-215ENST00000590574 WDR43Q15061 677 aaKnown RBP eCLIP22.87■■□□□ 1.25
SMARCA4-215ENST00000590574 CHGAP10645 457 aaKnown RBP22.82■■□□□ 1.24
SMARCA4-215ENST00000590574 RRBP1Q9P2E9 1410 aaKnown RBP22.82■■□□□ 1.24
SMARCA4-215ENST00000590574 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
SMARCA4-215ENST00000590574 TOP2BQ02880 1626 aa22.81■■□□□ 1.24
SMARCA4-215ENST00000590574 PHLDB1Q86UU1 1377 aa22.8■■□□□ 1.24
SMARCA4-215ENST00000590574 FANCD2Q9BXW9 1451 aa22.79■■□□□ 1.24
SMARCA4-215ENST00000590574 PRXQ9BXM0 1461 aa22.78■■□□□ 1.24
SMARCA4-215ENST00000590574 NCAPD3P42695 1498 aa22.78■■□□□ 1.24
SMARCA4-215ENST00000590574 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.77■■□□□ 1.24
SMARCA4-215ENST00000590574 LRRC9Q6ZRR7 1453 aa22.77■■□□□ 1.24
SMARCA4-215ENST00000590574 L3MBTL2Q969R5 705 aa22.76■■□□□ 1.23
SMARCA4-215ENST00000590574 PDS5BQ9NTI5 1447 aa22.75■■□□□ 1.23
SMARCA4-215ENST00000590574 CCDC18Q5T9S5 1454 aa22.75■■□□□ 1.23
SMARCA4-215ENST00000590574 DCAF11Q8TEB1 546 aa22.71■■□□□ 1.23
SMARCA4-215ENST00000590574 PKD2Q13563 968 aa22.71■■□□□ 1.23
SMARCA4-215ENST00000590574 RAD54L2Q9Y4B4 1467 aa22.69■■□□□ 1.22
SMARCA4-215ENST00000590574 CUX1P39880 1505 aa22.68■■□□□ 1.22
SMARCA4-215ENST00000590574 BCL11AQ9H165 835 aa22.68■■□□□ 1.22
SMARCA4-215ENST00000590574 NEFMP07197 916 aa22.66■■□□□ 1.22
SMARCA4-215ENST00000590574 CFTRP13569 1480 aa22.65■■□□□ 1.22
SMARCA4-215ENST00000590574 ERICH6BQ5W0A0 696 aa22.65■■□□□ 1.22
SMARCA4-215ENST00000590574 CC2D1BQ5T0F9 858 aaKnown RBP22.65■■□□□ 1.22
SMARCA4-215ENST00000590574 FGD6Q6ZV73 1430 aa22.65■■□□□ 1.22
SMARCA4-215ENST00000590574 NOP58Q9Y2X3 529 aaKnown RBP22.65■■□□□ 1.22
SMARCA4-215ENST00000590574 KNSTRNQ9Y448 316 aa22.63■■□□□ 1.21
SMARCA4-215ENST00000590574 ERCC6Q03468 1493 aa22.6■■□□□ 1.21
SMARCA4-215ENST00000590574 UPF2Q9HAU5 1272 aaKnown RBP22.59■■□□□ 1.21
SMARCA4-215ENST00000590574 BICRAQ9NZM4 1560 aa22.59■■□□□ 1.21
SMARCA4-215ENST00000590574 CASKIN1Q8WXD9 1431 aa22.56■■□□□ 1.2
SMARCA4-215ENST00000590574 UACAQ9BZF9 1416 aa22.55■■□□□ 1.2
SMARCA4-215ENST00000590574 DDRGK1Q96HY6 314 aa22.55■■□□□ 1.2
SMARCA4-215ENST00000590574 NUP155O75694 1391 aa22.55■■□□□ 1.2
SMARCA4-215ENST00000590574 MYOM3Q5VTT5 1437 aa22.54■■□□□ 1.2
SMARCA4-215ENST00000590574 ANKRD30AQ9BXX3 1397 aa22.54■■□□□ 1.2
SMARCA4-215ENST00000590574 TIAM1Q13009 1591 aa22.54■■□□□ 1.2
SMARCA4-215ENST00000590574 CDCA8Q53HL2 280 aa22.53■■□□□ 1.2
SMARCA4-215ENST00000590574 PRKRIP1Q9H875 184 aaPredicted RBP22.52■■□□□ 1.2
SMARCA4-215ENST00000590574 HMGXB3Q12766 1538 aa22.51■■□□□ 1.19
SMARCA4-215ENST00000590574 FYCO1Q9BQS8 1478 aa22.5■■□□□ 1.19
SMARCA4-215ENST00000590574 GAPVD1Q14C86 1478 aa22.5■■□□□ 1.19
SMARCA4-215ENST00000590574 TMF1P82094 1093 aa22.5■■□□□ 1.19
SMARCA4-215ENST00000590574 NUDCQ9Y266 331 aa22.49■■□□□ 1.19
SMARCA4-215ENST00000590574 ROCK2O75116 1388 aaKnown RBP22.48■■□□□ 1.19
SMARCA4-215ENST00000590574 NPM1P06748 294 aaKnown RBP eCLIP22.48■■□□□ 1.19
SMARCA4-215ENST00000590574 LAS1LQ9Y4W2 734 aaKnown RBP22.48■■□□□ 1.19
SMARCA4-215ENST00000590574 CARMIL2Q6F5E8 1435 aa22.48■■□□□ 1.19
SMARCA4-215ENST00000590574 NCOA2Q15596 1464 aa22.47■■□□□ 1.19
SMARCA4-215ENST00000590574 KTN1Q86UP2 1357 aaKnown RBP22.47■■□□□ 1.19
SMARCA4-215ENST00000590574 PEG3Q9GZU2 1588 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms