RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	TRIM52	Q96A61	297 aa		13.62	□□□□□ -0.23
PPP4R1-222	ENST00000582594	THOC2	Q8NI27	1593 aa	Known RBP	13.6	□□□□□ -0.23
PPP4R1-222	ENST00000582594	ARHGAP35	Q9NRY4	1499 aa		13.6	□□□□□ -0.23
PPP4R1-222	ENST00000582594	WDR97	A6NE52	1622 aa		13.6	□□□□□ -0.23
PPP4R1-222	ENST00000582594	BCL11A	Q9H165	835 aa		13.6	□□□□□ -0.23
PPP4R1-222	ENST00000582594	NEFL	P07196	543 aa		13.59	□□□□□ -0.23
PPP4R1-222	ENST00000582594	FAM50A	Q14320	339 aa	Known RBP	13.58	□□□□□ -0.24
PPP4R1-222	ENST00000582594	RBM19	Q9Y4C8	960 aa	Known RBP	13.58	□□□□□ -0.24
PPP4R1-222	ENST00000582594	KIF27	Q86VH2	1401 aa		13.56	□□□□□ -0.24
PPP4R1-222	ENST00000582594	CUX1	P39880	1505 aa		13.56	□□□□□ -0.24
PPP4R1-222	ENST00000582594	SETD5	Q9C0A6	1442 aa		13.55	□□□□□ -0.24
PPP4R1-222	ENST00000582594	PPP1R15A	O75807	674 aa	Predicted RBP	13.54	□□□□□ -0.24
PPP4R1-222	ENST00000582594	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.53	□□□□□ -0.24
PPP4R1-222	ENST00000582594	ANP32C	O43423	234 aa		13.51	□□□□□ -0.25
PPP4R1-222	ENST00000582594	PHLDB1	Q86UU1	1377 aa		13.5	□□□□□ -0.25
PPP4R1-222	ENST00000582594	P3H3	Q8IVL6	736 aa		13.5	□□□□□ -0.25
PPP4R1-222	ENST00000582594	TIAM1	Q13009	1591 aa		13.49	□□□□□ -0.25
PPP4R1-222	ENST00000582594	IRX6	P78412	446 aa	Predicted RBP	13.47	□□□□□ -0.25
PPP4R1-222	ENST00000582594	WDR62	O43379	1518 aa		13.46	□□□□□ -0.25
PPP4R1-222	ENST00000582594	CCER2	I3L3R5	266 aa		13.45	□□□□□ -0.26
PPP4R1-222	ENST00000582594	LRRC9	Q6ZRR7	1453 aa		13.45	□□□□□ -0.26
PPP4R1-222	ENST00000582594	MSH5	O43196	834 aa		13.45	□□□□□ -0.26
PPP4R1-222	ENST00000582594	IGF1R	P08069	1367 aa		13.41	□□□□□ -0.26
PPP4R1-222	ENST00000582594	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
PPP4R1-222	ENST00000582594	TONSL	Q96HA7	1378 aa		13.38	□□□□□ -0.27
PPP4R1-222	ENST00000582594	CARMIL1	Q5VZK9	1371 aa		13.38	□□□□□ -0.27
PPP4R1-222	ENST00000582594	TIMELESS	Q9UNS1	1208 aa		13.38	□□□□□ -0.27
PPP4R1-222	ENST00000582594	MAP3K1	Q13233	1512 aa		13.37	□□□□□ -0.27
PPP4R1-222	ENST00000582594	PCF11	O94913	1555 aa	Known RBP	13.36	□□□□□ -0.27
PPP4R1-222	ENST00000582594	KIF21A	Q7Z4S6	1674 aa		13.35	□□□□□ -0.27
PPP4R1-222	ENST00000582594	ERICH6	Q7L0X2	663 aa		13.34	□□□□□ -0.27
PPP4R1-222	ENST00000582594	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.34	□□□□□ -0.27
PPP4R1-222	ENST00000582594	CFTR	P13569	1480 aa		13.34	□□□□□ -0.27
PPP4R1-222	ENST00000582594	FHOD3	Q2V2M9	1422 aa		13.33	□□□□□ -0.28
PPP4R1-222	ENST00000582594	CFAP43	Q8NDM7	1665 aa		13.32	□□□□□ -0.28
PPP4R1-222	ENST00000582594	FHAD1	B1AJZ9	1412 aa		13.32	□□□□□ -0.28
PPP4R1-222	ENST00000582594	PDS5B	Q9NTI5	1447 aa		13.29	□□□□□ -0.28
PPP4R1-222	ENST00000582594	CCDC18	Q5T9S5	1454 aa		13.28	□□□□□ -0.28
PPP4R1-222	ENST00000582594	FGD5	Q6ZNL6	1462 aa		13.28	□□□□□ -0.28
PPP4R1-222	ENST00000582594	FANCI	Q9NVI1	1328 aa		13.28	□□□□□ -0.28
PPP4R1-222	ENST00000582594	MRC2	Q9UBG0	1479 aa		13.27	□□□□□ -0.29
PPP4R1-222	ENST00000582594	CCDC184	Q52MB2	194 aa		13.26	□□□□□ -0.29
PPP4R1-222	ENST00000582594	PTPRK	Q15262	1439 aa		13.25	□□□□□ -0.29
PPP4R1-222	ENST00000582594	HSPA5	P11021	654 aa	Known RBP	13.24	□□□□□ -0.29
PPP4R1-222	ENST00000582594	FGD6	Q6ZV73	1430 aa		13.24	□□□□□ -0.29
PPP4R1-222	ENST00000582594	WASHC2A	Q641Q2	1341 aa		13.24	□□□□□ -0.29
PPP4R1-222	ENST00000582594	B4GALNT3	Q6L9W6	998 aa		13.23	□□□□□ -0.29
PPP4R1-222	ENST00000582594	FAM9B	Q8IZU0	186 aa		13.23	□□□□□ -0.29
PPP4R1-222	ENST00000582594	AQR	O60306	1485 aa	Known RBP eCLIP	13.23	□□□□□ -0.29	3e-6	■■■■■ 30.6
PPP4R1-222	ENST00000582594	UACA	Q9BZF9	1416 aa		13.22	□□□□□ -0.29
PPP4R1-222	ENST00000582594	CADPS	Q9ULU8	1353 aa		13.22	□□□□□ -0.29
PPP4R1-222	ENST00000582594	FYCO1	Q9BQS8	1478 aa		13.21	□□□□□ -0.29
PPP4R1-222	ENST00000582594	PPP4R2	Q9NY27	417 aa		13.21	□□□□□ -0.29
PPP4R1-222	ENST00000582594	MTUS2	Q5JR59	1369 aa		13.21	□□□□□ -0.3
PPP4R1-222	ENST00000582594	CASKIN1	Q8WXD9	1431 aa		13.2	□□□□□ -0.3
PPP4R1-222	ENST00000582594	PTPN23	Q9H3S7	1636 aa		13.2	□□□□□ -0.3
PPP4R1-222	ENST00000582594	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
PPP4R1-222	ENST00000582594	RRP7BP	Q9NSQ0	103 aa		13.2	□□□□□ -0.3
PPP4R1-222	ENST00000582594	CHIC2	Q9UKJ5	165 aa		13.2	□□□□□ -0.3
PPP4R1-222	ENST00000582594	HFM1	A2PYH4	1435 aa		13.19	□□□□□ -0.3
PPP4R1-222	ENST00000582594	KDM5B	Q9UGL1	1544 aa		13.18	□□□□□ -0.3
PPP4R1-222	ENST00000582594	NAIP	Q13075	1403 aa		13.18	□□□□□ -0.3
PPP4R1-222	ENST00000582594	RAD54L2	Q9Y4B4	1467 aa		13.17	□□□□□ -0.3
PPP4R1-222	ENST00000582594	CNGB1	Q14028	1251 aa	Predicted RBP	13.17	□□□□□ -0.3
PPP4R1-222	ENST00000582594	C11orf95	C9JLR9	678 aa	Predicted RBP	13.15	□□□□□ -0.3
PPP4R1-222	ENST00000582594	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
PPP4R1-222	ENST00000582594	MRS2	Q9HD23	443 aa		13.15	□□□□□ -0.3
PPP4R1-222	ENST00000582594	FOXD1	Q16676	465 aa		13.14	□□□□□ -0.31
PPP4R1-222	ENST00000582594	DEK	P35659	375 aa	Known RBP	13.13	□□□□□ -0.31
PPP4R1-222	ENST00000582594	EFCAB5	A4FU69	1503 aa		13.13	□□□□□ -0.31
PPP4R1-222	ENST00000582594	NBR1	Q14596	966 aa		13.13	□□□□□ -0.31
PPP4R1-222	ENST00000582594	CNTLN	Q9NXG0	1405 aa		13.13	□□□□□ -0.31
PPP4R1-222	ENST00000582594	SENP3-EIF4A1	A0A087X0R7	540 aa		13.12	□□□□□ -0.31
PPP4R1-222	ENST00000582594	FMN1	Q68DA7	1419 aa		13.12	□□□□□ -0.31
PPP4R1-222	ENST00000582594	ERCC6	Q03468	1493 aa		13.12	□□□□□ -0.31
PPP4R1-222	ENST00000582594	NCOA2	Q15596	1464 aa		13.12	□□□□□ -0.31
PPP4R1-222	ENST00000582594	ERICH6B	Q5W0A0	696 aa		13.12	□□□□□ -0.31
PPP4R1-222	ENST00000582594	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.12	□□□□□ -0.31
PPP4R1-222	ENST00000582594	SNAPC4	Q5SXM2	1469 aa		13.11	□□□□□ -0.31
PPP4R1-222	ENST00000582594	MYOM3	Q5VTT5	1437 aa		13.11	□□□□□ -0.31
PPP4R1-222	ENST00000582594	L3MBTL2	Q969R5	705 aa		13.1	□□□□□ -0.31
PPP4R1-222	ENST00000582594	LRRIQ1	Q96JM4	1722 aa		13.1	□□□□□ -0.31
PPP4R1-222	ENST00000582594	PAK3	O75914	559 aa	Predicted RBP	13.09	□□□□□ -0.31
PPP4R1-222	ENST00000582594	CTTNBP2	Q8WZ74	1663 aa		13.09	□□□□□ -0.31
PPP4R1-222	ENST00000582594	CCDC7	Q96M83	1385 aa		13.08	□□□□□ -0.32
PPP4R1-222	ENST00000582594	ZBED9	Q6R2W3	1325 aa		13.08	□□□□□ -0.32
PPP4R1-222	ENST00000582594	DNMBP	Q6XZF7	1577 aa		13.08	□□□□□ -0.32
PPP4R1-222	ENST00000582594	NOP58	Q9Y2X3	529 aa	Known RBP	13.08	□□□□□ -0.32
PPP4R1-222	ENST00000582594	DENND4B	O75064	1496 aa	Predicted RBP	13.07	□□□□□ -0.32
PPP4R1-222	ENST00000582594	FANCD2	Q9BXW9	1451 aa		13.07	□□□□□ -0.32
PPP4R1-222	ENST00000582594	KDM6B	O15054	1643 aa		13.06	□□□□□ -0.32
PPP4R1-222	ENST00000582594	ARID3C	A6NKF2	412 aa		13.06	□□□□□ -0.32
PPP4R1-222	ENST00000582594	MPHOSPH9	Q99550	1183 aa		13.06	□□□□□ -0.32
PPP4R1-222	ENST00000582594	POLR3GL	Q9BT43	218 aa		13.05	□□□□□ -0.32
PPP4R1-222	ENST00000582594	NBPF8	Q3BBV2	869 aa		13.05	□□□□□ -0.32
PPP4R1-222	ENST00000582594	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.04	□□□□□ -0.32
PPP4R1-222	ENST00000582594	POLA1	P09884	1462 aa	Predicted RBP	13.04	□□□□□ -0.32
PPP4R1-222	ENST00000582594	NES	P48681	1621 aa		13.04	□□□□□ -0.32
PPP4R1-222	ENST00000582594	AKNA	Q7Z591	1439 aa		13.04	□□□□□ -0.32
PPP4R1-222	ENST00000582594	DNAJC5	Q9H3Z4	198 aa		13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms