RNA–Protein interactions for RNA: ENST00000574911.5

NCBP3-204, Transcript of nuclear cap binding subunit 3, humanhuman

TSL 1 (best)

Gene NCBP3, Length 2,701 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3-204ENST00000574911 CFAP43Q8NDM7 1665 aa13.15□□□□□ -0.3
NCBP3-204ENST00000574911 NESP48681 1621 aa13.15□□□□□ -0.3
NCBP3-204ENST00000574911 CUL7Q14999 1698 aa13.14□□□□□ -0.31
NCBP3-204ENST00000574911 GTF3C3Q9Y5Q9 886 aa13.14□□□□□ -0.31
NCBP3-204ENST00000574911 PCF11O94913 1555 aaKnown RBP13.14□□□□□ -0.31
NCBP3-204ENST00000574911 PELP1Q8IZL8 1130 aaKnown RBP13.13□□□□□ -0.31
NCBP3-204ENST00000574911 EFCAB5A4FU69 1503 aa13.12□□□□□ -0.31
NCBP3-204ENST00000574911 LAMC3Q9Y6N6 1575 aa13.12□□□□□ -0.31
NCBP3-204ENST00000574911 PHLDB1Q86UU1 1377 aa13.11□□□□□ -0.31
NCBP3-204ENST00000574911 WDR97A6NE52 1622 aa13.11□□□□□ -0.31
NCBP3-204ENST00000574911 RAB3GAP2Q9H2M9 1393 aa13.1□□□□□ -0.31
NCBP3-204ENST00000574911 AQRO60306 1485 aaKnown RBP eCLIP13.1□□□□□ -0.31
NCBP3-204ENST00000574911 CTTNBP2Q8WZ74 1663 aa13.09□□□□□ -0.31
NCBP3-204ENST00000574911 FYCO1Q9BQS8 1478 aa13.09□□□□□ -0.31
NCBP3-204ENST00000574911 URB2Q14146 1524 aaKnown RBP13.09□□□□□ -0.31
NCBP3-204ENST00000574911 ITGAEP38570 1179 aa13.09□□□□□ -0.31
NCBP3-204ENST00000574911 FHOD3Q2V2M9 1422 aa13.09□□□□□ -0.31
NCBP3-204ENST00000574911 CASKIN1Q8WXD9 1431 aa13.08□□□□□ -0.32
NCBP3-204ENST00000574911 SETD5Q9C0A6 1442 aa13.07□□□□□ -0.32
NCBP3-204ENST00000574911 P3H3Q8IVL6 736 aa13.07□□□□□ -0.32
NCBP3-204ENST00000574911 MAPKBP1O60336 1514 aa13.07□□□□□ -0.32
NCBP3-204ENST00000574911 YTHDC1Q96MU7 727 aaKnown RBP13.06□□□□□ -0.32
NCBP3-204ENST00000574911 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
NCBP3-204ENST00000574911 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.03□□□□□ -0.32
NCBP3-204ENST00000574911 FMN1Q68DA7 1419 aa13.02□□□□□ -0.33
NCBP3-204ENST00000574911 SNAPC4Q5SXM2 1469 aa13.01□□□□□ -0.33
NCBP3-204ENST00000574911 SAMD9Q5K651 1589 aa13.01□□□□□ -0.33
NCBP3-204ENST00000574911 PDS5BQ9NTI5 1447 aa13.01□□□□□ -0.33
NCBP3-204ENST00000574911 FAM50AQ14320 339 aaKnown RBP13□□□□□ -0.33
NCBP3-204ENST00000574911 ATP1B4Q9UN42 357 aaPredicted RBP13□□□□□ -0.33
NCBP3-204ENST00000574911 GAPVD1Q14C86 1478 aa12.99□□□□□ -0.33
NCBP3-204ENST00000574911 TDRD9Q8NDG6 1382 aaKnown RBP12.99□□□□□ -0.33
NCBP3-204ENST00000574911 KIF21AQ7Z4S6 1674 aa12.95□□□□□ -0.34
NCBP3-204ENST00000574911 FGD6Q6ZV73 1430 aa12.95□□□□□ -0.34
NCBP3-204ENST00000574911 GRIN2BQ13224 1484 aa12.95□□□□□ -0.34
NCBP3-204ENST00000574911 TARBP1Q13395 1621 aaKnown RBP12.94□□□□□ -0.34
NCBP3-204ENST00000574911 THOC2Q8NI27 1593 aaKnown RBP12.94□□□□□ -0.34
NCBP3-204ENST00000574911 LRRIQ1Q96JM4 1722 aa12.94□□□□□ -0.34
NCBP3-204ENST00000574911 DNAJC5BQ9UF47 199 aa12.92□□□□□ -0.34
NCBP3-204ENST00000574911 TIMELESSQ9UNS1 1208 aa12.92□□□□□ -0.34
NCBP3-204ENST00000574911 MTUS2Q5JR59 1369 aa12.91□□□□□ -0.34
NCBP3-204ENST00000574911 SIN3AQ96ST3 1273 aa12.9□□□□□ -0.34
NCBP3-204ENST00000574911 NCOA2Q15596 1464 aa12.89□□□□□ -0.35
NCBP3-204ENST00000574911 EHBP1L1Q8N3D4 1523 aa12.88□□□□□ -0.35
NCBP3-204ENST00000574911 PTPRKQ15262 1439 aa12.88□□□□□ -0.35
NCBP3-204ENST00000574911 MYOM3Q5VTT5 1437 aa12.87□□□□□ -0.35
NCBP3-204ENST00000574911 SUPT6HQ7KZ85 1726 aaKnown RBP12.87□□□□□ -0.35
NCBP3-204ENST00000574911 PBRM1Q86U86 1689 aa12.87□□□□□ -0.35
NCBP3-204ENST00000574911 HFM1A2PYH4 1435 aa12.87□□□□□ -0.35
NCBP3-204ENST00000574911 ARHGEF11O15085 1522 aa12.87□□□□□ -0.35
NCBP3-204ENST00000574911 CCDC18Q5T9S5 1454 aa12.86□□□□□ -0.35
NCBP3-204ENST00000574911 PTPN23Q9H3S7 1636 aa12.86□□□□□ -0.35
NCBP3-204ENST00000574911 UGGT2Q9NYU1 1516 aa12.85□□□□□ -0.35
NCBP3-204ENST00000574911 ADAMTS12P58397 1594 aa12.84□□□□□ -0.35
NCBP3-204ENST00000574911 MAGI3Q5TCQ9 1506 aa12.83□□□□□ -0.35
NCBP3-204ENST00000574911 PPP1R15AO75807 674 aaPredicted RBP12.83□□□□□ -0.35
NCBP3-204ENST00000574911 UACAQ9BZF9 1416 aa12.83□□□□□ -0.36
NCBP3-204ENST00000574911 NAIPQ13075 1403 aa12.82□□□□□ -0.36
NCBP3-204ENST00000574911 IQGAP2Q13576 1575 aa12.82□□□□□ -0.36
NCBP3-204ENST00000574911 MRC2Q9UBG0 1479 aa12.82□□□□□ -0.36
NCBP3-204ENST00000574911 HECW1Q76N89 1606 aa12.82□□□□□ -0.36
NCBP3-204ENST00000574911 TCOF1Q13428 1488 aaKnown RBP12.81□□□□□ -0.36
NCBP3-204ENST00000574911 EPRSP07814 1512 aaKnown RBP12.78□□□□□ -0.36
NCBP3-204ENST00000574911 WDR62O43379 1518 aa12.77□□□□□ -0.37
NCBP3-204ENST00000574911 TONSLQ96HA7 1378 aa12.76□□□□□ -0.37
NCBP3-204ENST00000574911 DDX10Q13206 875 aaKnown RBP12.76□□□□□ -0.37
NCBP3-204ENST00000574911 IFT140Q96RY7 1462 aa12.75□□□□□ -0.37
NCBP3-204ENST00000574911 GCC2Q8IWJ2 1684 aa12.75□□□□□ -0.37
NCBP3-204ENST00000574911 AKNAQ7Z591 1439 aa12.75□□□□□ -0.37
NCBP3-204ENST00000574911 KCNH8Q96L42 1107 aa12.75□□□□□ -0.37
NCBP3-204ENST00000574911 MIA2Q96PC5 1412 aa12.74□□□□□ -0.37
NCBP3-204ENST00000574911 CDK13Q14004 1512 aaKnown RBP12.73□□□□□ -0.37
NCBP3-204ENST00000574911 KDM5BQ9UGL1 1544 aa12.73□□□□□ -0.37
NCBP3-204ENST00000574911 ZNF608Q9ULD9 1512 aaPredicted RBP12.72□□□□□ -0.37
NCBP3-204ENST00000574911 SUPT16HQ9Y5B9 1047 aaKnown RBP12.71□□□□□ -0.38
NCBP3-204ENST00000574911 KIAA0586Q9BVV6 1533 aa12.7□□□□□ -0.38
NCBP3-204ENST00000574911 DENND4BO75064 1496 aaPredicted RBP12.7□□□□□ -0.38
NCBP3-204ENST00000574911 KIAA0556O60303 1618 aa12.7□□□□□ -0.38
NCBP3-204ENST00000574911 DISP1Q96F81 1524 aa12.69□□□□□ -0.38
NCBP3-204ENST00000574911 HIRIP3Q9BW71 556 aaPredicted RBP12.69□□□□□ -0.38
NCBP3-204ENST00000574911 RRP7BPQ9NSQ0 103 aa12.69□□□□□ -0.38
NCBP3-204ENST00000574911 KDM6BO15054 1643 aa12.69□□□□□ -0.38
NCBP3-204ENST00000574911 CCER2I3L3R5 266 aa12.68□□□□□ -0.38
NCBP3-204ENST00000574911 CHIC2Q9UKJ5 165 aa12.67□□□□□ -0.38
NCBP3-204ENST00000574911 GRIN2AQ12879 1464 aa12.66□□□□□ -0.38
NCBP3-204ENST00000574911 NUP153P49790 1475 aaKnown RBP12.65□□□□□ -0.38
NCBP3-204ENST00000574911 EIF4G3O43432 1585 aaKnown RBP12.65□□□□□ -0.38
NCBP3-204ENST00000574911 RAPGEF6Q8TEU7 1601 aa12.64□□□□□ -0.39
NCBP3-204ENST00000574911 ANP32CO43423 234 aa12.64□□□□□ -0.39
NCBP3-204ENST00000574911 ROCK1Q13464 1354 aa12.64□□□□□ -0.39
NCBP3-204ENST00000574911 DAPK1P53355 1430 aa12.63□□□□□ -0.39
NCBP3-204ENST00000574911 DNMT1P26358 1616 aaKnown RBP12.63□□□□□ -0.39
NCBP3-204ENST00000574911 TRIM52Q96A61 297 aa12.62□□□□□ -0.39
NCBP3-204ENST00000574911 ARID3CA6NKF2 412 aa12.62□□□□□ -0.39
NCBP3-204ENST00000574911 MPHOSPH9Q99550 1183 aa12.62□□□□□ -0.39
NCBP3-204ENST00000574911 ABCC5O15440 1437 aa12.61□□□□□ -0.39
NCBP3-204ENST00000574911 MAGI1Q96QZ7 1491 aaPredicted RBP12.6□□□□□ -0.39
NCBP3-204ENST00000574911 CEP170Q5SW79 1584 aa12.58□□□□□ -0.4
NCBP3-204ENST00000574911 CDK11AQ9UQ88 783 aaPredicted RBP12.58□□□□□ -0.4
NCBP3-204ENST00000574911 HSPA5P11021 654 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms