RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 SETD5Q9C0A6 1442 aa25.05■■□□□ 1.6
SCARF1-205ENST00000571272 PHLDB1Q86UU1 1377 aa25.04■■□□□ 1.6
SCARF1-205ENST00000571272 DDX10Q13206 875 aaKnown RBP25.02■■□□□ 1.6
SCARF1-205ENST00000571272 LRRC9Q6ZRR7 1453 aa25.01■■□□□ 1.59
SCARF1-205ENST00000571272 MAP3K1Q13233 1512 aa24.96■■□□□ 1.59
SCARF1-205ENST00000571272 WDR97A6NE52 1622 aa24.95■■□□□ 1.58
SCARF1-205ENST00000571272 FGD5Q6ZNL6 1462 aa24.94■■□□□ 1.58
SCARF1-205ENST00000571272 TSHZ2Q9NRE2 1034 aa24.94■■□□□ 1.58
SCARF1-205ENST00000571272 HIRIP3Q9BW71 556 aaPredicted RBP24.93■■□□□ 1.58
SCARF1-205ENST00000571272 BCANQ96GW7 911 aa24.91■■□□□ 1.58
SCARF1-205ENST00000571272 CADPSQ9ULU8 1353 aa24.9■■□□□ 1.58
SCARF1-205ENST00000571272 FHAD1B1AJZ9 1412 aa24.88■■□□□ 1.57
SCARF1-205ENST00000571272 PRDM2Q13029 1718 aa24.86■■□□□ 1.57
SCARF1-205ENST00000571272 PCF11O94913 1555 aaKnown RBP24.84■■□□□ 1.57
SCARF1-205ENST00000571272 FHOD3Q2V2M9 1422 aa24.83■■□□□ 1.57
SCARF1-205ENST00000571272 PPP1R15AO75807 674 aaPredicted RBP24.82■■□□□ 1.56
SCARF1-205ENST00000571272 FKBP8Q14318 412 aa24.81■■□□□ 1.56
SCARF1-205ENST00000571272 CFAP43Q8NDM7 1665 aa24.77■■□□□ 1.56
SCARF1-205ENST00000571272 TIMELESSQ9UNS1 1208 aa24.76■■□□□ 1.55
SCARF1-205ENST00000571272 TRIM52Q96A61 297 aa24.74■■□□□ 1.55
SCARF1-205ENST00000571272 RAD54L2Q9Y4B4 1467 aa24.72■■□□□ 1.55
SCARF1-205ENST00000571272 ANP32CO43423 234 aa24.7■■□□□ 1.54
SCARF1-205ENST00000571272 FANCD2Q9BXW9 1451 aa24.68■■□□□ 1.54
SCARF1-205ENST00000571272 FYCO1Q9BQS8 1478 aa24.67■■□□□ 1.54
SCARF1-205ENST00000571272 CASKIN1Q8WXD9 1431 aa24.66■■□□□ 1.54
SCARF1-205ENST00000571272 TONSLQ96HA7 1378 aa24.65■■□□□ 1.54
SCARF1-205ENST00000571272 CCER2I3L3R5 266 aa24.64■■□□□ 1.53
SCARF1-205ENST00000571272 NEFLP07196 543 aa24.63■■□□□ 1.53
SCARF1-205ENST00000571272 FGD6Q6ZV73 1430 aa24.61■■□□□ 1.53
SCARF1-205ENST00000571272 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.61■■□□□ 1.536e-8■■■■□ 21.9
SCARF1-205ENST00000571272 MTUS2Q5JR59 1369 aa24.59■■□□□ 1.53
SCARF1-205ENST00000571272 EFCAB5A4FU69 1503 aa24.59■■□□□ 1.53
SCARF1-205ENST00000571272 POLA1P09884 1462 aaPredicted RBP24.58■■□□□ 1.53
SCARF1-205ENST00000571272 CCDC18Q5T9S5 1454 aa24.58■■□□□ 1.53
SCARF1-205ENST00000571272 ANP32EQ9BTT0 268 aa24.58■■□□□ 1.53
SCARF1-205ENST00000571272 ABCA10Q8WWZ4 1543 aa24.57■■□□□ 1.52
SCARF1-205ENST00000571272 PTPRKQ15262 1439 aa24.57■■□□□ 1.52
SCARF1-205ENST00000571272 AQRO60306 1485 aaKnown RBP eCLIP24.56■■□□□ 1.52
SCARF1-205ENST00000571272 FMN1Q68DA7 1419 aa24.54■■□□□ 1.52
SCARF1-205ENST00000571272 DNMBPQ6XZF7 1577 aa24.53■■□□□ 1.52
SCARF1-205ENST00000571272 TOPBP1Q92547 1522 aa24.53■■□□□ 1.52
SCARF1-205ENST00000571272 UACAQ9BZF9 1416 aa24.5■■□□□ 1.51
SCARF1-205ENST00000571272 HFM1A2PYH4 1435 aa24.5■■□□□ 1.51
SCARF1-205ENST00000571272 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
SCARF1-205ENST00000571272 NESP48681 1621 aa24.49■■□□□ 1.51
SCARF1-205ENST00000571272 SNAPC4Q5SXM2 1469 aa24.48■■□□□ 1.51
SCARF1-205ENST00000571272 CTTNBP2Q8WZ74 1663 aa24.47■■□□□ 1.51
SCARF1-205ENST00000571272 CUL7Q14999 1698 aa24.45■■□□□ 1.51
SCARF1-205ENST00000571272 PTPN23Q9H3S7 1636 aa24.45■■□□□ 1.5
SCARF1-205ENST00000571272 NAIPQ13075 1403 aa24.45■■□□□ 1.5
SCARF1-205ENST00000571272 RBM19Q9Y4C8 960 aaKnown RBP24.44■■□□□ 1.5
SCARF1-205ENST00000571272 NCOA2Q15596 1464 aa24.43■■□□□ 1.5
SCARF1-205ENST00000571272 TDRD9Q8NDG6 1382 aaKnown RBP24.42■■□□□ 1.5
SCARF1-205ENST00000571272 RRP7BPQ9NSQ0 103 aa24.42■■□□□ 1.5
SCARF1-205ENST00000571272 CHIC2Q9UKJ5 165 aa24.41■■□□□ 1.5
SCARF1-205ENST00000571272 MYOM3Q5VTT5 1437 aa24.41■■□□□ 1.5
SCARF1-205ENST00000571272 HNRNPUQ00839 825 aaKnown RBP eCLIP24.4■■□□□ 1.5
SCARF1-205ENST00000571272 LRRIQ1Q96JM4 1722 aa24.36■■□□□ 1.49
SCARF1-205ENST00000571272 IRX6P78412 446 aaPredicted RBP24.34■■□□□ 1.49
SCARF1-205ENST00000571272 HSPA5P11021 654 aaKnown RBP24.33■■□□□ 1.49
SCARF1-205ENST00000571272 GRIN2BQ13224 1484 aa24.33■■□□□ 1.48
SCARF1-205ENST00000571272 WASHC2AQ641Q2 1341 aa24.32■■□□□ 1.48
SCARF1-205ENST00000571272 KDM5BQ9UGL1 1544 aa24.32■■□□□ 1.48
SCARF1-205ENST00000571272 SAMD9Q5K651 1589 aa24.3■■□□□ 1.48
SCARF1-205ENST00000571272 URB2Q14146 1524 aaKnown RBP24.29■■□□□ 1.48
SCARF1-205ENST00000571272 SUPT6HQ7KZ85 1726 aaKnown RBP24.29■■□□□ 1.48
SCARF1-205ENST00000571272 GAPVD1Q14C86 1478 aa24.27■■□□□ 1.48
SCARF1-205ENST00000571272 EHBP1L1Q8N3D4 1523 aa24.25■■□□□ 1.47
SCARF1-205ENST00000571272 ARID3CA6NKF2 412 aa24.25■■□□□ 1.47
SCARF1-205ENST00000571272 MAGI3Q5TCQ9 1506 aa24.24■■□□□ 1.47
SCARF1-205ENST00000571272 EIF4G2P78344 907 aaKnown RBP eCLIP24.23■■□□□ 1.47
SCARF1-205ENST00000571272 FOXD1Q16676 465 aa24.23■■□□□ 1.47
SCARF1-205ENST00000571272 UGGT2Q9NYU1 1516 aa24.23■■□□□ 1.47
SCARF1-205ENST00000571272 CCDC184Q52MB2 194 aa24.21■■□□□ 1.47
SCARF1-205ENST00000571272 DENND4BO75064 1496 aaPredicted RBP24.21■■□□□ 1.47
SCARF1-205ENST00000571272 ABCA5Q8WWZ7 1642 aa24.2■■□□□ 1.46
SCARF1-205ENST00000571272 MPHOSPH9Q99550 1183 aa24.19■■□□□ 1.46
SCARF1-205ENST00000571272 L3MBTL2Q969R5 705 aa24.19■■□□□ 1.46
SCARF1-205ENST00000571272 THOC2Q8NI27 1593 aaKnown RBP24.18■■□□□ 1.46
SCARF1-205ENST00000571272 C11orf95C9JLR9 678 aaPredicted RBP24.17■■□□□ 1.46
SCARF1-205ENST00000571272 KDM6BO15054 1643 aa24.16■■□□□ 1.46
SCARF1-205ENST00000571272 ARHGEF11O15085 1522 aa24.16■■□□□ 1.46
SCARF1-205ENST00000571272 MSH5O43196 834 aa24.13■■□□□ 1.45
SCARF1-205ENST00000571272 FAM9BQ8IZU0 186 aa24.13■■□□□ 1.45
SCARF1-205ENST00000571272 CDK11AQ9UQ88 783 aaPredicted RBP24.13■■□□□ 1.45
SCARF1-205ENST00000571272 TCOF1Q13428 1488 aaKnown RBP24.12■■□□□ 1.45
SCARF1-205ENST00000571272 CNTLNQ9NXG0 1405 aa24.11■■□□□ 1.45
SCARF1-205ENST00000571272 LAMC3Q9Y6N6 1575 aa24.1■■□□□ 1.45
SCARF1-205ENST00000571272 HECW1Q76N89 1606 aa24.1■■□□□ 1.45
SCARF1-205ENST00000571272 GCC2Q8IWJ2 1684 aa24.09■■□□□ 1.45
SCARF1-205ENST00000571272 PRKRIP1Q9H875 184 aaPredicted RBP24.09■■□□□ 1.45
SCARF1-205ENST00000571272 CDK13Q14004 1512 aaKnown RBP24.07■■□□□ 1.44
SCARF1-205ENST00000571272 MRS2Q9HD23 443 aa24.07■■□□□ 1.44
SCARF1-205ENST00000571272 EPRSP07814 1512 aaKnown RBP24.07■■□□□ 1.44
SCARF1-205ENST00000571272 CCDC7Q96M83 1385 aa24.06■■□□□ 1.44
SCARF1-205ENST00000571272 NBPF8Q3BBV2 869 aa24.06■■□□□ 1.44
SCARF1-205ENST00000571272 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
SCARF1-205ENST00000571272 AKNAQ7Z591 1439 aa24.03■■□□□ 1.44
SCARF1-205ENST00000571272 PDS5BQ9NTI5 1447 aa24.03■■□□□ 1.44
SCARF1-205ENST00000571272 NCOA1Q15788 1441 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms