RNA–Protein interactions for RNA: ENST00000561359.1

HERC1-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-213ENST00000561359 CFTRP13569 1480 aa10.47□□□□□ -0.73
HERC1-213ENST00000561359 ILDR1Q86SU0 546 aaPredicted RBP10.46□□□□□ -0.73
HERC1-213ENST00000561359 IFT140Q96RY7 1462 aa10.46□□□□□ -0.74
HERC1-213ENST00000561359 RSF1Q96T23 1441 aaPredicted RBP10.45□□□□□ -0.74
HERC1-213ENST00000561359 WIZO95785 1651 aa10.38□□□□□ -0.75
HERC1-213ENST00000561359 AQRO60306 1485 aaKnown RBP eCLIP10.36□□□□□ -0.751e-6■■■■□ 20
HERC1-213ENST00000561359 EIF4G3O43432 1585 aaKnown RBP10.36□□□□□ -0.75
HERC1-213ENST00000561359 CHD1O14646 1710 aa10.36□□□□□ -0.75
HERC1-213ENST00000561359 MKRN4PQ13434 485 aaPredicted RBP10.33□□□□□ -0.76
HERC1-213ENST00000561359 TOPBP1Q92547 1522 aa10.33□□□□□ -0.76
HERC1-213ENST00000561359 CHMP7Q8WUX9 453 aaPredicted RBP10.29□□□□□ -0.76
HERC1-213ENST00000561359 AKT1S1Q96B36 256 aa10.29□□□□□ -0.76
HERC1-213ENST00000561359 SPDYE2BA6NHP3 402 aa10.28□□□□□ -0.76
HERC1-213ENST00000561359 SPDYE6P0CI01 402 aa10.28□□□□□ -0.76
HERC1-213ENST00000561359 SPDYE2Q495Y8 402 aa10.28□□□□□ -0.76
HERC1-213ENST00000561359 ABCC8Q09428 1581 aa10.26□□□□□ -0.77
HERC1-213ENST00000561359 CLASP1Q7Z460 1538 aa10.26□□□□□ -0.77
HERC1-213ENST00000561359 GAPVD1Q14C86 1478 aa10.25□□□□□ -0.77
HERC1-213ENST00000561359 TDRD9Q8NDG6 1382 aaKnown RBP10.25□□□□□ -0.77
HERC1-213ENST00000561359 SYNJ1O43426 1573 aa10.23□□□□□ -0.77
HERC1-213ENST00000561359 ZNF692Q9BU19 519 aaPredicted RBP10.23□□□□□ -0.77
HERC1-213ENST00000561359 SNAPC4Q5SXM2 1469 aa10.23□□□□□ -0.77
HERC1-213ENST00000561359 TARBP1Q13395 1621 aaKnown RBP10.22□□□□□ -0.77
HERC1-213ENST00000561359 TOP2AP11388 1531 aaKnown RBP10.22□□□□□ -0.77
HERC1-213ENST00000561359 DNMBPQ6XZF7 1577 aa10.22□□□□□ -0.77
HERC1-213ENST00000561359 KDM4FA0A1W2PPD8 638 aa10.21□□□□□ -0.77
HERC1-213ENST00000561359 REM2Q8IYK8 340 aaPredicted RBP10.2□□□□□ -0.78
HERC1-213ENST00000561359 PRDM2Q13029 1718 aa10.19□□□□□ -0.78
HERC1-213ENST00000561359 POLA1P09884 1462 aaPredicted RBP10.19□□□□□ -0.78
HERC1-213ENST00000561359 RAD54L2Q9Y4B4 1467 aa10.19□□□□□ -0.78
HERC1-213ENST00000561359 SOGA1O94964 1423 aa10.17□□□□□ -0.78
HERC1-213ENST00000561359 MAGI1Q96QZ7 1491 aaPredicted RBP10.16□□□□□ -0.78
HERC1-213ENST00000561359 CHRDL2Q6WN34 429 aa10.15□□□□□ -0.78
HERC1-213ENST00000561359 CCDC88BA6NC98 1476 aa10.15□□□□□ -0.78
HERC1-213ENST00000561359 SYNJ2O15056 1496 aa10.14□□□□□ -0.79
HERC1-213ENST00000561359 GRIN2BQ13224 1484 aa10.12□□□□□ -0.79
HERC1-213ENST00000561359 FAM69CQ0P6D2 419 aa10.12□□□□□ -0.79
HERC1-213ENST00000561359 SSUH2Q9Y2M2 353 aa10.12□□□□□ -0.79
HERC1-213ENST00000561359 POTEHQ6S545 545 aa10.1□□□□□ -0.79
HERC1-213ENST00000561359 PITPNM1O00562 1244 aa10.08□□□□□ -0.8
HERC1-213ENST00000561359 ERCC6L2Q5T890 1561 aa10.08□□□□□ -0.8
HERC1-213ENST00000561359 WDR97A6NE52 1622 aa10.07□□□□□ -0.8
HERC1-213ENST00000561359 SPDYE4A6NLX3 237 aa10.06□□□□□ -0.8
HERC1-213ENST00000561359 CLEC11AQ9Y240 323 aa10.06□□□□□ -0.8
HERC1-213ENST00000561359 KIF13AQ9H1H9 1805 aa10.05□□□□□ -0.8
HERC1-213ENST00000561359 FGD5Q6ZNL6 1462 aa10.05□□□□□ -0.8
HERC1-213ENST00000561359 SPDYE1Q8NFV5 336 aaPredicted RBP10.05□□□□□ -0.8
HERC1-213ENST00000561359 NPM1P06748 294 aaKnown RBP eCLIP10.04□□□□□ -0.8
HERC1-213ENST00000561359 FBXO41Q8TF61 875 aa10.03□□□□□ -0.8
HERC1-213ENST00000561359 ABCC10Q5T3U5 1492 aa10.02□□□□□ -0.81
HERC1-213ENST00000561359 CEP170Q5SW79 1584 aa10.01□□□□□ -0.81
HERC1-213ENST00000561359 KDM6BO15054 1643 aa10.01□□□□□ -0.81
HERC1-213ENST00000561359 GRIN2AQ12879 1464 aa9.98□□□□□ -0.81
HERC1-213ENST00000561359 HECW2Q9P2P5 1572 aa9.98□□□□□ -0.81
HERC1-213ENST00000561359 ADGRL1O94910 1474 aa9.97□□□□□ -0.81
HERC1-213ENST00000561359 NUP160Q12769 1436 aa9.96□□□□□ -0.82
HERC1-213ENST00000561359 CUX1P39880 1505 aa9.96□□□□□ -0.82
HERC1-213ENST00000561359 PIP4P2Q8N4L2 257 aa9.95□□□□□ -0.82
HERC1-213ENST00000561359 PRG4Q92954 1404 aaPredicted RBP9.95□□□□□ -0.82
HERC1-213ENST00000561359 PBRM1Q86U86 1689 aa9.95□□□□□ -0.82
HERC1-213ENST00000561359 DIP2BQ9P265 1576 aa9.94□□□□□ -0.82
HERC1-213ENST00000561359 JPH4Q96JJ6 628 aa9.93□□□□□ -0.82
HERC1-213ENST00000561359 MAPKBP1O60336 1514 aa9.92□□□□□ -0.82
HERC1-213ENST00000561359 LMTK3Q96Q04 1460 aa9.92□□□□□ -0.82
HERC1-213ENST00000561359 PRR29P0C7W0 189 aa9.92□□□□□ -0.82
HERC1-213ENST00000561359 FXR2P51116 673 aaKnown RBP eCLIP9.91□□□□□ -0.82
HERC1-213ENST00000561359 SHROOM2Q13796 1616 aa9.91□□□□□ -0.82
HERC1-213ENST00000561359 ABCA10Q8WWZ4 1543 aa9.91□□□□□ -0.82
HERC1-213ENST00000561359 TSPOAP1O95153 1857 aa9.9□□□□□ -0.82
HERC1-213ENST00000561359 ABCA5Q8WWZ7 1642 aa9.88□□□□□ -0.83
HERC1-213ENST00000561359 FHAD1B1AJZ9 1412 aa9.88□□□□□ -0.83
HERC1-213ENST00000561359 ADAMTS12P58397 1594 aa9.87□□□□□ -0.83
HERC1-213ENST00000561359 STAG3Q9UJ98 1225 aa9.86□□□□□ -0.83
HERC1-213ENST00000561359 SOCS7O14512 581 aa9.85□□□□□ -0.83
HERC1-213ENST00000561359 PRKAR2AP13861 404 aaKnown RBP9.85□□□□□ -0.83
HERC1-213ENST00000561359 FKBP8Q14318 412 aa9.85□□□□□ -0.83
HERC1-213ENST00000561359 ADCY10Q96PN6 1610 aa9.84□□□□□ -0.83
HERC1-213ENST00000561359 ILDR2Q71H61 639 aa9.81□□□□□ -0.84
HERC1-213ENST00000561359 WRNQ14191 1432 aaPredicted RBP eCLIP9.81□□□□□ -0.84
HERC1-213ENST00000561359 TTBK1Q5TCY1 1321 aaPredicted RBP9.8□□□□□ -0.84
HERC1-213ENST00000561359 COL17A1Q9UMD9 1497 aaPredicted RBP9.79□□□□□ -0.84
HERC1-213ENST00000561359 DISP3Q9P2K9 1392 aa9.79□□□□□ -0.84
HERC1-213ENST00000561359 CHADLQ6NUI6 762 aa9.79□□□□□ -0.84
HERC1-213ENST00000561359 ASXL2Q76L83 1435 aa9.76□□□□□ -0.85
HERC1-213ENST00000561359 HAX1O00165 279 aa9.76□□□□□ -0.85
HERC1-213ENST00000561359 ERICH3Q5RHP9 1530 aa9.76□□□□□ -0.85
HERC1-213ENST00000561359 TOP2BQ02880 1626 aa9.75□□□□□ -0.85
HERC1-213ENST00000561359 PLB1Q6P1J6 1458 aa9.75□□□□□ -0.85
HERC1-213ENST00000561359 PROM2Q8N271 834 aa9.75□□□□□ -0.85
HERC1-213ENST00000561359 PTPRGP23470 1445 aa9.74□□□□□ -0.85
HERC1-213ENST00000561359 RUSC2Q8N2Y8 1516 aa9.73□□□□□ -0.85
HERC1-213ENST00000561359 PPRC1Q5VV67 1664 aaKnown RBP9.73□□□□□ -0.85
HERC1-213ENST00000561359 TEX14Q8IWB6 1497 aa9.72□□□□□ -0.85
HERC1-213ENST00000561359 ABCC2Q92887 1545 aa9.72□□□□□ -0.85
HERC1-213ENST00000561359 GLI2P10070 1586 aa9.72□□□□□ -0.85
HERC1-213ENST00000561359 KIAA0586Q9BVV6 1533 aa9.68□□□□□ -0.86
HERC1-213ENST00000561359 CERKQ8TCT0 537 aa9.68□□□□□ -0.86
HERC1-213ENST00000561359 EPRSP07814 1512 aaKnown RBP9.67□□□□□ -0.86
HERC1-213ENST00000561359 TNIKQ9UKE5 1360 aa9.66□□□□□ -0.86
HERC1-213ENST00000561359 CREBZFQ9NS37 354 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms