RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ASTLQ6HA08 431 aaPredicted RBP7.87□□□□□ -1.15
TRAV28-201ENST00000557548 ATMINO43313 823 aaPredicted RBP7.81□□□□□ -1.16
TRAV28-201ENST00000557548 ST18O60284 1047 aa7.8□□□□□ -1.16
TRAV28-201ENST00000557548 PAK3O75914 559 aaPredicted RBP7.78□□□□□ -1.16
TRAV28-201ENST00000557548 PHF12Q96QT6 1004 aa7.78□□□□□ -1.16
TRAV28-201ENST00000557548 PABPN1Q86U42 306 aaKnown RBP eCLIP7.77□□□□□ -1.17
TRAV28-201ENST00000557548 RTN4Q9NQC3 1192 aaKnown RBP7.74□□□□□ -1.17
TRAV28-201ENST00000557548 SLC24A1O60721 1099 aa7.72□□□□□ -1.17
TRAV28-201ENST00000557548 AMER1Q5JTC6 1135 aaPredicted RBP7.7□□□□□ -1.18
TRAV28-201ENST00000557548 TMEM121BQ9BXQ6 578 aaPredicted RBP7.68□□□□□ -1.18
TRAV28-201ENST00000557548 POTEFA5A3E0 1075 aa7.66□□□□□ -1.18
TRAV28-201ENST00000557548 MS4A3Q96HJ5 214 aa7.66□□□□□ -1.18
TRAV28-201ENST00000557548 MKRN4PQ13434 485 aaPredicted RBP7.64□□□□□ -1.19
TRAV28-201ENST00000557548 ATN1P54259 1190 aaPredicted RBP7.63□□□□□ -1.19
TRAV28-201ENST00000557548 FKBP8Q14318 412 aa7.61□□□□□ -1.19
TRAV28-201ENST00000557548 SLAIN1Q8ND83 568 aa7.61□□□□□ -1.19
TRAV28-201ENST00000557548 ATXN8OSP0DMR3 200 aa7.6□□□□□ -1.19
TRAV28-201ENST00000557548 CREBZFQ9NS37 354 aa7.6□□□□□ -1.19
TRAV28-201ENST00000557548 SEC24BO95487 1268 aa7.54□□□□□ -1.2
TRAV28-201ENST00000557548 MARVELD3Q96A59 401 aa7.53□□□□□ -1.2
TRAV28-201ENST00000557548 KRTAP3-3Q9BYR6 98 aa7.52□□□□□ -1.21
TRAV28-201ENST00000557548 KRTAP3-2Q9BYR7 98 aa7.52□□□□□ -1.21
TRAV28-201ENST00000557548 SNPHO15079 494 aa7.51□□□□□ -1.21
TRAV28-201ENST00000557548 COLQQ9Y215 455 aaPredicted RBP7.51□□□□□ -1.21
TRAV28-201ENST00000557548 NPM1P06748 294 aaKnown RBP eCLIP7.49□□□□□ -1.21
TRAV28-201ENST00000557548 BMP2KQ9NSY1 1161 aaPredicted RBP7.47□□□□□ -1.21
TRAV28-201ENST00000557548 RNF166Q96A37 237 aaPredicted RBP7.44□□□□□ -1.22
TRAV28-201ENST00000557548 EMP3P54852 163 aa7.42□□□□□ -1.22
TRAV28-201ENST00000557548 TIE1P35590 1138 aa7.41□□□□□ -1.22
TRAV28-201ENST00000557548 IER5LQ5T953 404 aa7.4□□□□□ -1.22
TRAV28-201ENST00000557548 HS3ST6Q96QI5 342 aa7.4□□□□□ -1.22
TRAV28-201ENST00000557548 STAG3Q9UJ98 1225 aa7.39□□□□□ -1.23
TRAV28-201ENST00000557548 POTEB3A0JP26 581 aa7.35□□□□□ -1.23
TRAV28-201ENST00000557548 POTEBQ6S5H4 581 aa7.35□□□□□ -1.23
TRAV28-201ENST00000557548 FAM205CA6NFA0 338 aa7.34□□□□□ -1.23
TRAV28-201ENST00000557548 TRPC6Q9Y210 931 aa7.33□□□□□ -1.24
TRAV28-201ENST00000557548 MNX1P50219 401 aaPredicted RBP7.32□□□□□ -1.24
TRAV28-201ENST00000557548 KIF12Q96FN5 646 aa7.32□□□□□ -1.24
TRAV28-201ENST00000557548 TTLL13PA6NNM8 815 aa7.31□□□□□ -1.24
TRAV28-201ENST00000557548 MYT1LQ9UL68 1186 aa7.3□□□□□ -1.24
TRAV28-201ENST00000557548 CCDC61Q9Y6R9 512 aa7.29□□□□□ -1.24
TRAV28-201ENST00000557548 TRIM35Q9UPQ4 493 aa7.27□□□□□ -1.25
TRAV28-201ENST00000557548 TSPYL2Q9H2G4 693 aaPredicted RBP7.26□□□□□ -1.25
TRAV28-201ENST00000557548 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.26□□□□□ -1.25
TRAV28-201ENST00000557548 PLCG2P16885 1265 aa7.25□□□□□ -1.25
TRAV28-201ENST00000557548 MAP3K13O43283 966 aa7.2□□□□□ -1.26
TRAV28-201ENST00000557548 PTGER2P43116 358 aa7.17□□□□□ -1.26
TRAV28-201ENST00000557548 FBXO3Q9UK99 471 aa7.16□□□□□ -1.26
TRAV28-201ENST00000557548 SPDYE4A6NLX3 237 aa7.15□□□□□ -1.26
TRAV28-201ENST00000557548 IRX5P78411 483 aaPredicted RBP7.14□□□□□ -1.27
TRAV28-201ENST00000557548 PLA2G2EQ9NZK7 142 aa7.14□□□□□ -1.27
TRAV28-201ENST00000557548 PLCB2Q00722 1185 aa7.1□□□□□ -1.27
TRAV28-201ENST00000557548 OCEL1Q9H607 264 aa7.1□□□□□ -1.27
TRAV28-201ENST00000557548 VASPP50552 380 aaPredicted RBP7.09□□□□□ -1.27
TRAV28-201ENST00000557548 SGIP1Q9BQI5 828 aa7.08□□□□□ -1.28
TRAV28-201ENST00000557548 PROM2Q8N271 834 aa7.07□□□□□ -1.28
TRAV28-201ENST00000557548 ERBB3P21860 1342 aa7.05□□□□□ -1.28
TRAV28-201ENST00000557548 DCAF8L2P0C7V8 631 aa7.05□□□□□ -1.28
TRAV28-201ENST00000557548 C3orf67Q6ZVT6 689 aa7.04□□□□□ -1.28
TRAV28-201ENST00000557548 HAP1P54257 671 aaPredicted RBP7.03□□□□□ -1.28
TRAV28-201ENST00000557548 IFNLR1Q8IU57 520 aaPredicted RBP7.03□□□□□ -1.28
TRAV28-201ENST00000557548 TMEM106CQ9BVX2 250 aa7.02□□□□□ -1.29
TRAV28-201ENST00000557548 IRX2Q9BZI1 471 aaPredicted RBP7.02□□□□□ -1.29
TRAV28-201ENST00000557548 PCDHB13Q9Y5F0 798 aa7.01□□□□□ -1.29
TRAV28-201ENST00000557548 HOXB1P14653 301 aaPredicted RBP7□□□□□ -1.29
TRAV28-201ENST00000557548 PKD2Q13563 968 aa6.97□□□□□ -1.29
TRAV28-201ENST00000557548 RGS20O76081 388 aa6.96□□□□□ -1.3
TRAV28-201ENST00000557548 VARS2Q5ST30 1063 aaKnown RBP6.95□□□□□ -1.3
TRAV28-201ENST00000557548 ZNF687Q8N1G0 1237 aa6.94□□□□□ -1.3
TRAV28-201ENST00000557548 HCSTQ9UBK5 93 aa6.94□□□□□ -1.3
TRAV28-201ENST00000557548 ZNF710Q8N1W2 664 aa6.93□□□□□ -1.3
TRAV28-201ENST00000557548 L3MBTL3Q96JM7 780 aaPredicted RBP6.93□□□□□ -1.3
TRAV28-201ENST00000557548 HOXB3P14651 431 aaPredicted RBP6.91□□□□□ -1.3
TRAV28-201ENST00000557548 IFNL1Q8IU54 200 aa6.91□□□□□ -1.3
TRAV28-201ENST00000557548 BCANQ96GW7 911 aa6.91□□□□□ -1.3
TRAV28-201ENST00000557548 ANKRD13DQ6ZTN6 518 aa6.89□□□□□ -1.31
TRAV28-201ENST00000557548 RASEFQ8IZ41 740 aa6.89□□□□□ -1.31
TRAV28-201ENST00000557548 PRKCSHP14314 528 aaPredicted RBP6.88□□□□□ -1.31
TRAV28-201ENST00000557548 VSIG10Q8N0Z9 540 aa6.88□□□□□ -1.31
TRAV28-201ENST00000557548 KLHL34Q8N239 644 aa6.87□□□□□ -1.31
TRAV28-201ENST00000557548 DOK7Q18PE1 504 aa6.86□□□□□ -1.31
TRAV28-201ENST00000557548 ECM2O94769 699 aaPredicted RBP6.85□□□□□ -1.31
TRAV28-201ENST00000557548 SPOCK2Q92563 424 aa6.85□□□□□ -1.31
TRAV28-201ENST00000557548 PDCD7Q8N8D1 485 aaKnown RBP6.84□□□□□ -1.31
TRAV28-201ENST00000557548 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.84□□□□□ -1.31
TRAV28-201ENST00000557548 TAOK2Q9UL54 1235 aa6.84□□□□□ -1.31
TRAV28-201ENST00000557548 BBXQ8WY36 941 aaPredicted RBP6.83□□□□□ -1.32
TRAV28-201ENST00000557548 PAXIP1Q6ZW49 1069 aaPredicted RBP6.82□□□□□ -1.32
TRAV28-201ENST00000557548 RIMBP2O15034 1052 aa6.81□□□□□ -1.32
TRAV28-201ENST00000557548 KDM2AQ9Y2K7 1162 aa6.81□□□□□ -1.32
TRAV28-201ENST00000557548 Q6ZNB5 142 aa6.8□□□□□ -1.32
TRAV28-201ENST00000557548 CFAP44Q96MT7 982 aa6.8□□□□□ -1.32
TRAV28-201ENST00000557548 RGL2O15211 777 aa6.78□□□□□ -1.32
TRAV28-201ENST00000557548 LSM11P83369 360 aaKnown RBP eCLIP6.78□□□□□ -1.32
TRAV28-201ENST00000557548 PLCD3Q8N3E9 789 aa6.78□□□□□ -1.32
TRAV28-201ENST00000557548 TPRNQ4KMQ1 711 aa6.76□□□□□ -1.33
TRAV28-201ENST00000557548 PLEKHG5O94827 1062 aa6.75□□□□□ -1.33
TRAV28-201ENST00000557548 MIER1Q8N108 512 aa6.73□□□□□ -1.33
TRAV28-201ENST00000557548 ZSWIM6Q9HCJ5 1215 aa6.73□□□□□ -1.33
TRAV28-201ENST00000557548 SPRYD3Q8NCJ5 442 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms