RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 FBLN2P98095 1184 aa16.5■□□□□ 0.23
SRP54-210ENST00000556380 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
SRP54-210ENST00000556380 CHMP7Q8WUX9 453 aaPredicted RBP16.48■□□□□ 0.23
SRP54-210ENST00000556380 PBRM1Q86U86 1689 aa16.47■□□□□ 0.23
SRP54-210ENST00000556380 ERICH3Q5RHP9 1530 aa16.47■□□□□ 0.23
SRP54-210ENST00000556380 U3KPZ7 1027 aaPredicted RBP16.47■□□□□ 0.23
SRP54-210ENST00000556380 KIF27Q86VH2 1401 aa16.46■□□□□ 0.23
SRP54-210ENST00000556380 TRIM41Q8WV44 630 aa16.46■□□□□ 0.23
SRP54-210ENST00000556380 IGF1RP08069 1367 aa16.46■□□□□ 0.23
SRP54-210ENST00000556380 CHD1O14646 1710 aa16.44■□□□□ 0.22
SRP54-210ENST00000556380 FHAD1B1AJZ9 1412 aa16.43■□□□□ 0.22
SRP54-210ENST00000556380 ADAMTS12P58397 1594 aa16.41■□□□□ 0.22
SRP54-210ENST00000556380 SLC4A2P04920 1241 aa16.4■□□□□ 0.22
SRP54-210ENST00000556380 GRIN2AQ12879 1464 aa16.38■□□□□ 0.21
SRP54-210ENST00000556380 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
SRP54-210ENST00000556380 NUP160Q12769 1436 aa16.35■□□□□ 0.21
SRP54-210ENST00000556380 CLASP1Q7Z460 1538 aa16.35■□□□□ 0.21
SRP54-210ENST00000556380 CARMIL1Q5VZK9 1371 aa16.32■□□□□ 0.2
SRP54-210ENST00000556380 CEP170Q5SW79 1584 aa16.29■□□□□ 0.2
SRP54-210ENST00000556380 ARHGEF11O15085 1522 aa16.28■□□□□ 0.2
SRP54-210ENST00000556380 CUL7Q14999 1698 aa16.27■□□□□ 0.19
SRP54-210ENST00000556380 RIMBP3CA6NJZ7 1639 aa16.25■□□□□ 0.19
SRP54-210ENST00000556380 RIMBP3BA6NNM3 1639 aa16.25■□□□□ 0.19
SRP54-210ENST00000556380 RIMBP3Q9UFD9 1639 aa16.25■□□□□ 0.19
SRP54-210ENST00000556380 CSRNP3Q8WYN3 585 aa16.2■□□□□ 0.18
SRP54-210ENST00000556380 JPH4Q96JJ6 628 aa16.2■□□□□ 0.18
SRP54-210ENST00000556380 SPINK5Q9NQ38 1064 aaPredicted RBP16.2■□□□□ 0.18
SRP54-210ENST00000556380 PRXQ9BXM0 1461 aa16.2■□□□□ 0.18
SRP54-210ENST00000556380 RAPGEF2Q9Y4G8 1499 aa16.2■□□□□ 0.18
SRP54-210ENST00000556380 KIAA0586Q9BVV6 1533 aa16.19■□□□□ 0.18
SRP54-210ENST00000556380 ARAP1Q96P48 1450 aa16.17■□□□□ 0.18
SRP54-210ENST00000556380 CAPN15O75808 1086 aa16.17■□□□□ 0.18
SRP54-210ENST00000556380 EEA1Q15075 1411 aa16.17■□□□□ 0.18
SRP54-210ENST00000556380 SHROOM2Q13796 1616 aa16.16■□□□□ 0.18
SRP54-210ENST00000556380 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
SRP54-210ENST00000556380 ERCC6L2Q5T890 1561 aa16.13■□□□□ 0.17
SRP54-210ENST00000556380 PRG4Q92954 1404 aaPredicted RBP16.12■□□□□ 0.17
SRP54-210ENST00000556380 FAM9AQ8IZU1 332 aaPredicted RBP16.11■□□□□ 0.17
SRP54-210ENST00000556380 SLC4A1APQ9BWU0 796 aaKnown RBP16.07■□□□□ 0.16
SRP54-210ENST00000556380 IQGAP2Q13576 1575 aa16.04■□□□□ 0.16
SRP54-210ENST00000556380 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.03■□□□□ 0.16
SRP54-210ENST00000556380 DSG3P32926 999 aa16.03■□□□□ 0.16
SRP54-210ENST00000556380 HNRNPUL2Q1KMD3 747 aaKnown RBP16.03■□□□□ 0.16
SRP54-210ENST00000556380 UGGT2Q9NYU1 1516 aa16.01■□□□□ 0.15
SRP54-210ENST00000556380 DISP1Q96F81 1524 aa15.99■□□□□ 0.15
SRP54-210ENST00000556380 APLP2Q06481 763 aa15.99■□□□□ 0.15
SRP54-210ENST00000556380 CARMIL2Q6F5E8 1435 aa15.97■□□□□ 0.15
SRP54-210ENST00000556380 KIF21BO75037 1637 aa15.97■□□□□ 0.15
SRP54-210ENST00000556380 TRHP20396 242 aaPredicted RBP15.95■□□□□ 0.14
SRP54-210ENST00000556380 SAMD1Q6SPF0 538 aaPredicted RBP15.95■□□□□ 0.14
SRP54-210ENST00000556380 TNIKQ9UKE5 1360 aa15.95■□□□□ 0.14
SRP54-210ENST00000556380 PTPRGP23470 1445 aa15.94■□□□□ 0.14
SRP54-210ENST00000556380 CTTNBP2Q8WZ74 1663 aa15.93■□□□□ 0.14
SRP54-210ENST00000556380 MYCNP04198 464 aaPredicted RBP15.89■□□□□ 0.13
SRP54-210ENST00000556380 ZNF219Q9P2Y4 722 aaPredicted RBP15.89■□□□□ 0.13
SRP54-210ENST00000556380 KIAA0556O60303 1618 aa15.89■□□□□ 0.13
SRP54-210ENST00000556380 GOLGA3Q08378 1498 aa15.89■□□□□ 0.13
SRP54-210ENST00000556380 UBTFP17480 764 aaKnown RBP15.87■□□□□ 0.13
SRP54-210ENST00000556380 EHMT2Q96KQ7 1210 aa15.86■□□□□ 0.13
SRP54-210ENST00000556380 TTBK1Q5TCY1 1321 aaPredicted RBP15.86■□□□□ 0.13
SRP54-210ENST00000556380 ADCY10Q96PN6 1610 aa15.83■□□□□ 0.13
SRP54-210ENST00000556380 P3H3Q8IVL6 736 aa15.83■□□□□ 0.12
SRP54-210ENST00000556380 UACAQ9BZF9 1416 aa15.83■□□□□ 0.12
SRP54-210ENST00000556380 UHRF1BP1LA0JNW5 1464 aa15.83■□□□□ 0.12
SRP54-210ENST00000556380 SAMD9Q5K651 1589 aa15.82■□□□□ 0.12
SRP54-210ENST00000556380 ABCB7O75027 752 aa15.81■□□□□ 0.12
SRP54-210ENST00000556380 FOXD4L1Q9NU39 408 aa15.8■□□□□ 0.12
SRP54-210ENST00000556380 NPM1P06748 294 aaKnown RBP eCLIP15.79■□□□□ 0.12
SRP54-210ENST00000556380 RANGAP1P46060 587 aaPredicted RBP15.79■□□□□ 0.12
SRP54-210ENST00000556380 ABCC2Q92887 1545 aa15.78■□□□□ 0.12
SRP54-210ENST00000556380 PLB1Q6P1J6 1458 aa15.78■□□□□ 0.12
SRP54-210ENST00000556380 ABCA8O94911 1581 aa15.75■□□□□ 0.11
SRP54-210ENST00000556380 KDM5BQ9UGL1 1544 aa15.75■□□□□ 0.11
SRP54-210ENST00000556380 FHOD3Q2V2M9 1422 aa15.75■□□□□ 0.11
SRP54-210ENST00000556380 EFCAB5A4FU69 1503 aa15.74■□□□□ 0.11
SRP54-210ENST00000556380 MAPKBP1O60336 1514 aa15.74■□□□□ 0.11
SRP54-210ENST00000556380 ARHGAP35Q9NRY4 1499 aa15.72■□□□□ 0.11
SRP54-210ENST00000556380 ABCC10Q5T3U5 1492 aa15.69■□□□□ 0.1
SRP54-210ENST00000556380 LOC105371045A0A1W2PR82 267 aa15.68■□□□□ 0.1
SRP54-210ENST00000556380 ASXL2Q76L83 1435 aa15.68■□□□□ 0.1
SRP54-210ENST00000556380 ATP10BO94823 1461 aa15.66■□□□□ 0.1
SRP54-210ENST00000556380 FAM69CQ0P6D2 419 aa15.65■□□□□ 0.1
SRP54-210ENST00000556380 ZCCHC11Q5TAX3 1644 aaKnown RBP15.65■□□□□ 0.1
SRP54-210ENST00000556380 ZBTB22O15209 634 aa15.64■□□□□ 0.09
SRP54-210ENST00000556380 NUP153P49790 1475 aaKnown RBP15.64■□□□□ 0.09
SRP54-210ENST00000556380 RAPGEF6Q8TEU7 1601 aa15.63■□□□□ 0.09
SRP54-210ENST00000556380 CLIP1P30622 1438 aa15.62■□□□□ 0.09
SRP54-210ENST00000556380 FMN1Q68DA7 1419 aa15.62■□□□□ 0.09
SRP54-210ENST00000556380 ARID3CA6NKF2 412 aa15.62■□□□□ 0.09
SRP54-210ENST00000556380 DIP2BQ9P265 1576 aa15.62■□□□□ 0.09
SRP54-210ENST00000556380 KIF13AQ9H1H9 1805 aa15.6■□□□□ 0.09
SRP54-210ENST00000556380 WDR7Q9Y4E6 1490 aa15.59■□□□□ 0.09
SRP54-210ENST00000556380 EPRSP07814 1512 aaKnown RBP15.58■□□□□ 0.09
SRP54-210ENST00000556380 GLI2P10070 1586 aa15.58■□□□□ 0.08
SRP54-210ENST00000556380 ATF5Q9Y2D1 282 aaPredicted RBP15.56■□□□□ 0.08
SRP54-210ENST00000556380 CEP162Q5TB80 1403 aa15.56■□□□□ 0.08
SRP54-210ENST00000556380 POLA2Q14181 598 aa15.55■□□□□ 0.08
SRP54-210ENST00000556380 KCNH8Q96L42 1107 aa15.54■□□□□ 0.08
SRP54-210ENST00000556380 CASKIN1Q8WXD9 1431 aa15.53■□□□□ 0.08
SRP54-210ENST00000556380 PLEKHD1A6NEE1 506 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms