RNA–Protein interactions for RNA: ENST00000553455.1

SYNE2-210, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2 BASIC

Gene SYNE2, Length 674 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-210ENST00000553455 CHGAP10645 457 aaKnown RBP12.55□□□□□ -0.4
SYNE2-210ENST00000553455 PAXIP1Q6ZW49 1069 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-210ENST00000553455 CHADLQ6NUI6 762 aa12.51□□□□□ -0.41
SYNE2-210ENST00000553455 HS6ST3Q8IZP7 471 aa12.51□□□□□ -0.41
SYNE2-210ENST00000553455 RIOK3O14730 519 aaKnown RBP12.48□□□□□ -0.41
SYNE2-210ENST00000553455 CFAP44Q96MT7 982 aa12.48□□□□□ -0.41
SYNE2-210ENST00000553455 CHRM1P11229 460 aaPredicted RBP12.47□□□□□ -0.41
SYNE2-210ENST00000553455 DNAJC5Q9H3Z4 198 aa12.44□□□□□ -0.42
SYNE2-210ENST00000553455 VSIG10Q8N0Z9 540 aa12.43□□□□□ -0.42
SYNE2-210ENST00000553455 SPRYD3Q8NCJ5 442 aa12.43□□□□□ -0.42
SYNE2-210ENST00000553455 FARP1Q9Y4F1 1045 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-210ENST00000553455 PYGBP11216 843 aa12.4□□□□□ -0.42
SYNE2-210ENST00000553455 FXR2P51116 673 aaKnown RBP eCLIP12.4□□□□□ -0.428e-8■■■■■ 31.6
SYNE2-210ENST00000553455 VGFO15240 615 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-210ENST00000553455 PRKAR2AP13861 404 aaKnown RBP12.38□□□□□ -0.43
SYNE2-210ENST00000553455 TAOK2Q9UL54 1235 aa12.38□□□□□ -0.43
SYNE2-210ENST00000553455 NKX1-1Q15270 411 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-210ENST00000553455 KDM2AQ9Y2K7 1162 aa12.37□□□□□ -0.43
SYNE2-210ENST00000553455 POTEHQ6S545 545 aa12.36□□□□□ -0.43
SYNE2-210ENST00000553455 SGIP1Q9BQI5 828 aa12.35□□□□□ -0.43
SYNE2-210ENST00000553455 TSPYL2Q9H2G4 693 aaPredicted RBP12.34□□□□□ -0.43
SYNE2-210ENST00000553455 TSHZ2Q9NRE2 1034 aa12.34□□□□□ -0.43
SYNE2-210ENST00000553455 STK25O00506 426 aa12.33□□□□□ -0.44
SYNE2-210ENST00000553455 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-210ENST00000553455 CHRDL2Q6WN34 429 aa12.31□□□□□ -0.44
SYNE2-210ENST00000553455 ZFP91Q96JP5 570 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-210ENST00000553455 PIP4P2Q8N4L2 257 aa12.28□□□□□ -0.44
SYNE2-210ENST00000553455 BCL11BQ9C0K0 894 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-210ENST00000553455 CCDC61Q9Y6R9 512 aa12.27□□□□□ -0.45
SYNE2-210ENST00000553455 GTPBP6O43824 516 aaPredicted RBP12.26□□□□□ -0.45
SYNE2-210ENST00000553455 STK24Q9Y6E0 443 aa12.25□□□□□ -0.45
SYNE2-210ENST00000553455 ZNF467Q7Z7K2 595 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-210ENST00000553455 BCANQ96GW7 911 aa12.2□□□□□ -0.46
SYNE2-210ENST00000553455 PCDHB8Q9UN66 801 aa12.19□□□□□ -0.46
SYNE2-210ENST00000553455 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
SYNE2-210ENST00000553455 PDAP1Q13442 181 aaKnown RBP12.16□□□□□ -0.46
SYNE2-210ENST00000553455 ZNF579Q8NAF0 562 aaKnown RBP12.15□□□□□ -0.46
SYNE2-210ENST00000553455 PAK3O75914 559 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-210ENST00000553455 IFNL1Q8IU54 200 aa12.11□□□□□ -0.47
SYNE2-210ENST00000553455 KIF12Q96FN5 646 aa12.11□□□□□ -0.47
SYNE2-210ENST00000553455 PSEN1P49768 467 aa12.1□□□□□ -0.47
SYNE2-210ENST00000553455 MAP3K13O43283 966 aa12.09□□□□□ -0.47
SYNE2-210ENST00000553455 RYDENQ9NUL5 291 aaKnown RBP12.09□□□□□ -0.47
SYNE2-210ENST00000553455 CD44P16070 742 aaKnown RBP12.05□□□□□ -0.48
SYNE2-210ENST00000553455 ZRANB1Q9UGI0 708 aa12.05□□□□□ -0.48
SYNE2-210ENST00000553455 PHF12Q96QT6 1004 aa12.02□□□□□ -0.49
SYNE2-210ENST00000553455 MFRPQ9BY79 579 aa12.01□□□□□ -0.49
SYNE2-210ENST00000553455 C19orf67A6NJJ6 358 aa11.95□□□□□ -0.5
SYNE2-210ENST00000553455 EFCAB3Q8N7B9 438 aa11.95□□□□□ -0.5
SYNE2-210ENST00000553455 CABP2Q9NPB3 220 aa11.95□□□□□ -0.5
SYNE2-210ENST00000553455 CADPS2Q86UW7 1296 aa11.94□□□□□ -0.5
SYNE2-210ENST00000553455 FBXO22Q8NEZ5 403 aa11.93□□□□□ -0.5
SYNE2-210ENST00000553455 PRKCSHP14314 528 aaPredicted RBP11.91□□□□□ -0.5
SYNE2-210ENST00000553455 SOX12O15370 315 aa11.89□□□□□ -0.51
SYNE2-210ENST00000553455 PPP1R37O75864 691 aa11.89□□□□□ -0.51
SYNE2-210ENST00000553455 MS4A3Q96HJ5 214 aa11.89□□□□□ -0.51
SYNE2-210ENST00000553455 PHF8Q9UPP1 1060 aa11.89□□□□□ -0.51
SYNE2-210ENST00000553455 TRPC6Q9Y210 931 aa11.89□□□□□ -0.51
SYNE2-210ENST00000553455 NLRP6P59044 892 aa11.87□□□□□ -0.51
SYNE2-210ENST00000553455 NBR1Q14596 966 aa11.87□□□□□ -0.51
SYNE2-210ENST00000553455 TMEM106CQ9BVX2 250 aa11.84□□□□□ -0.51
SYNE2-210ENST00000553455 TPRNQ4KMQ1 711 aa11.82□□□□□ -0.52
SYNE2-210ENST00000553455 MS4A4AQ96JQ5 239 aa11.82□□□□□ -0.52
SYNE2-210ENST00000553455 TIE1P35590 1138 aa11.77□□□□□ -0.53
SYNE2-210ENST00000553455 P3H3Q8IVL6 736 aa11.76□□□□□ -0.53
SYNE2-210ENST00000553455 KCNV2Q8TDN2 545 aa11.76□□□□□ -0.53
SYNE2-210ENST00000553455 TTLL13PA6NNM8 815 aa11.75□□□□□ -0.53
SYNE2-210ENST00000553455 GOLGA2Q08379 1002 aa11.74□□□□□ -0.53
SYNE2-210ENST00000553455 BMP2KQ9NSY1 1161 aaPredicted RBP11.74□□□□□ -0.53
SYNE2-210ENST00000553455 WDR70Q9NW82 654 aa11.74□□□□□ -0.53
SYNE2-210ENST00000553455 GALR2O43603 387 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-210ENST00000553455 EVX2Q03828 476 aa11.73□□□□□ -0.53
SYNE2-210ENST00000553455 ILDR1Q86SU0 546 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-210ENST00000553455 MKRN3Q13064 507 aaKnown RBP11.7□□□□□ -0.54
SYNE2-210ENST00000553455 NCKAP5LQ9HCH0 1330 aa11.69□□□□□ -0.54
SYNE2-210ENST00000553455 HAX1O00165 279 aa11.69□□□□□ -0.54
SYNE2-210ENST00000553455 TRIM35Q9UPQ4 493 aa11.66□□□□□ -0.54
SYNE2-210ENST00000553455 CRISPLD2Q9H0B8 497 aa11.64□□□□□ -0.55
SYNE2-210ENST00000553455 CLCN6P51797 869 aa11.63□□□□□ -0.55
SYNE2-210ENST00000553455 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.63□□□□□ -0.55
SYNE2-210ENST00000553455 MFSD10Q14728 455 aa11.62□□□□□ -0.55
SYNE2-210ENST00000553455 E2F4Q16254 413 aa11.61□□□□□ -0.55
SYNE2-210ENST00000553455 LARP6Q9BRS8 491 aaKnown RBP11.6□□□□□ -0.55
SYNE2-210ENST00000553455 PDE4AP27815 886 aa11.59□□□□□ -0.55
SYNE2-210ENST00000553455 ATN1P54259 1190 aaPredicted RBP11.59□□□□□ -0.55
SYNE2-210ENST00000553455 ARHGEF1Q92888 912 aaKnown RBP11.59□□□□□ -0.55
SYNE2-210ENST00000553455 ATMINO43313 823 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-210ENST00000553455 PDCD7Q8N8D1 485 aaKnown RBP11.57□□□□□ -0.56
SYNE2-210ENST00000553455 ASTLQ6HA08 431 aaPredicted RBP11.56□□□□□ -0.56
SYNE2-210ENST00000553455 DPY19L2Q6NUT2 758 aa11.56□□□□□ -0.56
SYNE2-210ENST00000553455 DDX27Q96GQ7 796 aaKnown RBP11.55□□□□□ -0.56
SYNE2-210ENST00000553455 IRX5P78411 483 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-210ENST00000553455 CAMK2BQ13554 666 aa11.51□□□□□ -0.57
SYNE2-210ENST00000553455 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.51□□□□□ -0.57
SYNE2-210ENST00000553455 MICALL2Q8IY33 904 aa11.51□□□□□ -0.57
SYNE2-210ENST00000553455 IER5LQ5T953 404 aa11.5□□□□□ -0.57
SYNE2-210ENST00000553455 LMOD2Q6P5Q4 547 aa11.49□□□□□ -0.57
SYNE2-210ENST00000553455 GPHNQ9NQX3 736 aaPredicted RBP11.49□□□□□ -0.57
SYNE2-210ENST00000553455 ARIH1Q9Y4X5 557 aaPredicted RBP11.49□□□□□ -0.57
SYNE2-210ENST00000553455 GABBR2O75899 941 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms