RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ADRA2BP18089 450 aa10.97□□□□□ -0.65
LIMA1-213ENST00000552720 P3H3Q8IVL6 736 aa10.97□□□□□ -0.65
LIMA1-213ENST00000552720 CC2D2AQ9P2K1 1620 aa10.96□□□□□ -0.66
LIMA1-213ENST00000552720 RAB3GAP2Q9H2M9 1393 aa10.95□□□□□ -0.66
LIMA1-213ENST00000552720 SLC24A1O60721 1099 aa10.94□□□□□ -0.66
LIMA1-213ENST00000552720 MAPKBP1O60336 1514 aa10.94□□□□□ -0.66
LIMA1-213ENST00000552720 PCF11O94913 1555 aaKnown RBP10.93□□□□□ -0.66
LIMA1-213ENST00000552720 LRRC9Q6ZRR7 1453 aa10.93□□□□□ -0.66
LIMA1-213ENST00000552720 PHLDB1Q86UU1 1377 aa10.92□□□□□ -0.66
LIMA1-213ENST00000552720 RAD54L2Q9Y4B4 1467 aa10.92□□□□□ -0.66
LIMA1-213ENST00000552720 ATP1B4Q9UN42 357 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-213ENST00000552720 FANCD2Q9BXW9 1451 aa10.91□□□□□ -0.66
LIMA1-213ENST00000552720 CFAP43Q8NDM7 1665 aa10.91□□□□□ -0.66
LIMA1-213ENST00000552720 MAP3K1Q13233 1512 aa10.9□□□□□ -0.66
LIMA1-213ENST00000552720 NESP48681 1621 aa10.9□□□□□ -0.66
LIMA1-213ENST00000552720 FAM50AQ14320 339 aaKnown RBP10.9□□□□□ -0.67
LIMA1-213ENST00000552720 FHOD3Q2V2M9 1422 aa10.89□□□□□ -0.67
LIMA1-213ENST00000552720 SIN3AQ96ST3 1273 aa10.87□□□□□ -0.67
LIMA1-213ENST00000552720 SETD5Q9C0A6 1442 aa10.87□□□□□ -0.67
LIMA1-213ENST00000552720 DNMBPQ6XZF7 1577 aa10.87□□□□□ -0.67
LIMA1-213ENST00000552720 POLA1P09884 1462 aaPredicted RBP10.87□□□□□ -0.67
LIMA1-213ENST00000552720 CTTNBP2Q8WZ74 1663 aa10.86□□□□□ -0.67
LIMA1-213ENST00000552720 KCNH8Q96L42 1107 aa10.86□□□□□ -0.67
LIMA1-213ENST00000552720 TOPBP1Q92547 1522 aa10.86□□□□□ -0.67
LIMA1-213ENST00000552720 WDR97A6NE52 1622 aa10.86□□□□□ -0.67
LIMA1-213ENST00000552720 FHAD1B1AJZ9 1412 aa10.85□□□□□ -0.67
LIMA1-213ENST00000552720 ABCA10Q8WWZ4 1543 aa10.84□□□□□ -0.67
LIMA1-213ENST00000552720 LRRIQ1Q96JM4 1722 aa10.83□□□□□ -0.68
LIMA1-213ENST00000552720 CUL7Q14999 1698 aa10.81□□□□□ -0.68
LIMA1-213ENST00000552720 FYCO1Q9BQS8 1478 aa10.81□□□□□ -0.68
LIMA1-213ENST00000552720 HIRIP3Q9BW71 556 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-213ENST00000552720 CASKIN1Q8WXD9 1431 aa10.79□□□□□ -0.68
LIMA1-213ENST00000552720 EFCAB5A4FU69 1503 aa10.79□□□□□ -0.68
LIMA1-213ENST00000552720 SUPT16HQ9Y5B9 1047 aaKnown RBP10.79□□□□□ -0.68
LIMA1-213ENST00000552720 URB2Q14146 1524 aaKnown RBP10.78□□□□□ -0.68
LIMA1-213ENST00000552720 DDX10Q13206 875 aaKnown RBP10.78□□□□□ -0.68
LIMA1-213ENST00000552720 SNAPC4Q5SXM2 1469 aa10.77□□□□□ -0.69
LIMA1-213ENST00000552720 TDRD9Q8NDG6 1382 aaKnown RBP10.77□□□□□ -0.69
LIMA1-213ENST00000552720 AQRO60306 1485 aaKnown RBP eCLIP10.75□□□□□ -0.69
LIMA1-213ENST00000552720 FGD6Q6ZV73 1430 aa10.75□□□□□ -0.69
LIMA1-213ENST00000552720 DNAJC5BQ9UF47 199 aa10.75□□□□□ -0.69
LIMA1-213ENST00000552720 PTPRKQ15262 1439 aa10.74□□□□□ -0.69
LIMA1-213ENST00000552720 ABCA5Q8WWZ7 1642 aa10.74□□□□□ -0.69
LIMA1-213ENST00000552720 FMN1Q68DA7 1419 aa10.73□□□□□ -0.69
LIMA1-213ENST00000552720 SAMD9Q5K651 1589 aa10.73□□□□□ -0.69
LIMA1-213ENST00000552720 MTUS2Q5JR59 1369 aa10.72□□□□□ -0.69
LIMA1-213ENST00000552720 KIF21AQ7Z4S6 1674 aa10.72□□□□□ -0.69
LIMA1-213ENST00000552720 CCDC18Q5T9S5 1454 aa10.72□□□□□ -0.69
LIMA1-213ENST00000552720 LAMC3Q9Y6N6 1575 aa10.72□□□□□ -0.69
LIMA1-213ENST00000552720 PPP1R15AO75807 674 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-213ENST00000552720 GAPVD1Q14C86 1478 aa10.71□□□□□ -0.7
LIMA1-213ENST00000552720 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.7□□□□□ -0.7
LIMA1-213ENST00000552720 PTPN23Q9H3S7 1636 aa10.7□□□□□ -0.7
LIMA1-213ENST00000552720 NCOA2Q15596 1464 aa10.7□□□□□ -0.7
LIMA1-213ENST00000552720 GRIN2BQ13224 1484 aa10.69□□□□□ -0.7
LIMA1-213ENST00000552720 SUPT6HQ7KZ85 1726 aaKnown RBP10.68□□□□□ -0.7
LIMA1-213ENST00000552720 MAGI3Q5TCQ9 1506 aa10.68□□□□□ -0.7
LIMA1-213ENST00000552720 HFM1A2PYH4 1435 aa10.67□□□□□ -0.7
LIMA1-213ENST00000552720 NAIPQ13075 1403 aa10.67□□□□□ -0.7
LIMA1-213ENST00000552720 MYOM3Q5VTT5 1437 aa10.67□□□□□ -0.7
LIMA1-213ENST00000552720 TONSLQ96HA7 1378 aa10.66□□□□□ -0.7
LIMA1-213ENST00000552720 BCANQ96GW7 911 aa10.66□□□□□ -0.7
LIMA1-213ENST00000552720 TIMELESSQ9UNS1 1208 aa10.66□□□□□ -0.7
LIMA1-213ENST00000552720 UACAQ9BZF9 1416 aa10.66□□□□□ -0.7
LIMA1-213ENST00000552720 TARBP1Q13395 1621 aaKnown RBP10.65□□□□□ -0.7
LIMA1-213ENST00000552720 PPP6R1Q9UPN7 881 aa10.65□□□□□ -0.7
LIMA1-213ENST00000552720 ARID3CA6NKF2 412 aa10.64□□□□□ -0.71
LIMA1-213ENST00000552720 PBRM1Q86U86 1689 aa10.64□□□□□ -0.71
LIMA1-213ENST00000552720 EHBP1L1Q8N3D4 1523 aa10.64□□□□□ -0.71
LIMA1-213ENST00000552720 CHIC2Q9UKJ5 165 aa10.64□□□□□ -0.71
LIMA1-213ENST00000552720 UGGT2Q9NYU1 1516 aa10.63□□□□□ -0.71
LIMA1-213ENST00000552720 TRIM52Q96A61 297 aa10.63□□□□□ -0.71
LIMA1-213ENST00000552720 RTN4Q9NQC3 1192 aaKnown RBP10.63□□□□□ -0.71
LIMA1-213ENST00000552720 RRP7BPQ9NSQ0 103 aa10.63□□□□□ -0.71
LIMA1-213ENST00000552720 KDM6BO15054 1643 aa10.63□□□□□ -0.71
LIMA1-213ENST00000552720 KDM5BQ9UGL1 1544 aa10.63□□□□□ -0.71
LIMA1-213ENST00000552720 PDS5BQ9NTI5 1447 aa10.62□□□□□ -0.71
LIMA1-213ENST00000552720 SLC4A1APQ9BWU0 796 aaKnown RBP10.62□□□□□ -0.71
LIMA1-213ENST00000552720 THOC2Q8NI27 1593 aaKnown RBP10.62□□□□□ -0.71
LIMA1-213ENST00000552720 TSHZ2Q9NRE2 1034 aa10.61□□□□□ -0.71
LIMA1-213ENST00000552720 ARHGEF11O15085 1522 aa10.61□□□□□ -0.71
LIMA1-213ENST00000552720 ANP32CO43423 234 aa10.61□□□□□ -0.71
LIMA1-213ENST00000552720 FKBP8Q14318 412 aa10.61□□□□□ -0.71
LIMA1-213ENST00000552720 CDK13Q14004 1512 aaKnown RBP10.6□□□□□ -0.71
LIMA1-213ENST00000552720 DENND4BO75064 1496 aaPredicted RBP10.6□□□□□ -0.71
LIMA1-213ENST00000552720 GCC2Q8IWJ2 1684 aa10.6□□□□□ -0.71
LIMA1-213ENST00000552720 IQGAP2Q13576 1575 aa10.58□□□□□ -0.72
LIMA1-213ENST00000552720 HECW1Q76N89 1606 aa10.58□□□□□ -0.72
LIMA1-213ENST00000552720 EPRSP07814 1512 aaKnown RBP10.57□□□□□ -0.72
LIMA1-213ENST00000552720 CCER2I3L3R5 266 aa10.57□□□□□ -0.72
LIMA1-213ENST00000552720 ADAMTS12P58397 1594 aa10.56□□□□□ -0.72
LIMA1-213ENST00000552720 TCOF1Q13428 1488 aaKnown RBP10.55□□□□□ -0.72
LIMA1-213ENST00000552720 WDR62O43379 1518 aa10.54□□□□□ -0.72
LIMA1-213ENST00000552720 HSPA5P11021 654 aaKnown RBP10.53□□□□□ -0.72
LIMA1-213ENST00000552720 WASHC2AQ641Q2 1341 aa10.52□□□□□ -0.72
LIMA1-213ENST00000552720 ZNF608Q9ULD9 1512 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-213ENST00000552720 MPHOSPH9Q99550 1183 aa10.51□□□□□ -0.73
LIMA1-213ENST00000552720 ZNF644Q9H582 1327 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-213ENST00000552720 MYT1Q01538 1121 aa10.5□□□□□ -0.73
LIMA1-213ENST00000552720 L3MBTL2Q969R5 705 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms