RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ARAP1Q96P48 1450 aa19.73■□□□□ 0.75
VPS29-208ENST00000550267 TARBP1Q13395 1621 aaKnown RBP19.73■□□□□ 0.75
VPS29-208ENST00000550267 FBLN2P98095 1184 aa19.7■□□□□ 0.74
VPS29-208ENST00000550267 POLA1P09884 1462 aaPredicted RBP19.67■□□□□ 0.74
VPS29-208ENST00000550267 MYCNP04198 464 aaPredicted RBP19.66■□□□□ 0.74
VPS29-208ENST00000550267 RAD54L2Q9Y4B4 1467 aa19.61■□□□□ 0.73
VPS29-208ENST00000550267 TDRD9Q8NDG6 1382 aaKnown RBP19.58■□□□□ 0.73
VPS29-208ENST00000550267 POTEHQ6S545 545 aa19.57■□□□□ 0.72
VPS29-208ENST00000550267 SOGA1O94964 1423 aa19.57■□□□□ 0.72
VPS29-208ENST00000550267 SNAPC4Q5SXM2 1469 aa19.55■□□□□ 0.72
VPS29-208ENST00000550267 CLASP1Q7Z460 1538 aa19.53■□□□□ 0.72
VPS29-208ENST00000550267 SLC4A1APQ9BWU0 796 aaKnown RBP19.51■□□□□ 0.71
VPS29-208ENST00000550267 FGD5Q6ZNL6 1462 aa19.49■□□□□ 0.71
VPS29-208ENST00000550267 CHMP7Q8WUX9 453 aaPredicted RBP19.48■□□□□ 0.71
VPS29-208ENST00000550267 SYNJ1O43426 1573 aa19.47■□□□□ 0.71
VPS29-208ENST00000550267 WDR97A6NE52 1622 aa19.47■□□□□ 0.71
VPS29-208ENST00000550267 MAGI1Q96QZ7 1491 aaPredicted RBP19.45■□□□□ 0.7
VPS29-208ENST00000550267 GRIN2BQ13224 1484 aa19.43■□□□□ 0.7
VPS29-208ENST00000550267 CUX1P39880 1505 aa19.42■□□□□ 0.7
VPS29-208ENST00000550267 SYNJ2O15056 1496 aa19.41■□□□□ 0.7
VPS29-208ENST00000550267 POLA2Q14181 598 aa19.39■□□□□ 0.69
VPS29-208ENST00000550267 FOXD4L1Q9NU39 408 aa19.38■□□□□ 0.69
VPS29-208ENST00000550267 GAPVD1Q14C86 1478 aa19.35■□□□□ 0.69
VPS29-208ENST00000550267 RBM42Q9BTD8 480 aaKnown RBP19.33■□□□□ 0.68
VPS29-208ENST00000550267 PBRM1Q86U86 1689 aa19.32■□□□□ 0.68
VPS29-208ENST00000550267 ABCA5Q8WWZ7 1642 aa19.25■□□□□ 0.67
VPS29-208ENST00000550267 ABCA10Q8WWZ4 1543 aa19.24■□□□□ 0.67
VPS29-208ENST00000550267 ERCC6L2Q5T890 1561 aa19.23■□□□□ 0.67
VPS29-208ENST00000550267 GRIN2AQ12879 1464 aa19.18■□□□□ 0.66
VPS29-208ENST00000550267 ATF5Q9Y2D1 282 aaPredicted RBP19.17■□□□□ 0.66
VPS29-208ENST00000550267 CEP170Q5SW79 1584 aa19.15■□□□□ 0.66
VPS29-208ENST00000550267 NUP160Q12769 1436 aa19.13■□□□□ 0.65
VPS29-208ENST00000550267 ADAMTS12P58397 1594 aa19.13■□□□□ 0.65
VPS29-208ENST00000550267 WRNQ14191 1432 aaPredicted RBP eCLIP19.08■□□□□ 0.65
VPS29-208ENST00000550267 SHROOM2Q13796 1616 aa19.07■□□□□ 0.64
VPS29-208ENST00000550267 FHAD1B1AJZ9 1412 aa19.06■□□□□ 0.64
VPS29-208ENST00000550267 ZBTB12Q9Y330 459 aaPredicted RBP19.03■□□□□ 0.64
VPS29-208ENST00000550267 ZBTB22O15209 634 aa19.01■□□□□ 0.63
VPS29-208ENST00000550267 BIVM-ERCC5R4GMW8 1640 aa19■□□□□ 0.63
VPS29-208ENST00000550267 KIF13AQ9H1H9 1805 aa19■□□□□ 0.63
VPS29-208ENST00000550267 TOP2BQ02880 1626 aa19■□□□□ 0.63
VPS29-208ENST00000550267 ERICH3Q5RHP9 1530 aa18.98■□□□□ 0.63
VPS29-208ENST00000550267 PRG4Q92954 1404 aaPredicted RBP18.98■□□□□ 0.63
VPS29-208ENST00000550267 SUPT5HO00267 1087 aaKnown RBP18.97■□□□□ 0.63
VPS29-208ENST00000550267 CHRDL2Q6WN34 429 aa18.94■□□□□ 0.62
VPS29-208ENST00000550267 JPH4Q96JJ6 628 aa18.93■□□□□ 0.62
VPS29-208ENST00000550267 FAM69CQ0P6D2 419 aa18.89■□□□□ 0.61
VPS29-208ENST00000550267 ABCC10Q5T3U5 1492 aa18.88■□□□□ 0.61
VPS29-208ENST00000550267 RUSC2Q8N2Y8 1516 aa18.87■□□□□ 0.61
VPS29-208ENST00000550267 AKT1S1Q96B36 256 aa18.87■□□□□ 0.61
VPS29-208ENST00000550267 NPM1P06748 294 aaKnown RBP eCLIP18.85■□□□□ 0.61
VPS29-208ENST00000550267 ATXN8OSP0DMR3 200 aa18.85■□□□□ 0.61
VPS29-208ENST00000550267 MAPKBP1O60336 1514 aa18.84■□□□□ 0.61
VPS29-208ENST00000550267 DIP2BQ9P265 1576 aa18.83■□□□□ 0.6
VPS29-208ENST00000550267 ADCY10Q96PN6 1610 aa18.81■□□□□ 0.6
VPS29-208ENST00000550267 KDM6BO15054 1643 aa18.76■□□□□ 0.59
VPS29-208ENST00000550267 KDM4FA0A1W2PPD8 638 aa18.75■□□□□ 0.59
VPS29-208ENST00000550267 KIAA0586Q9BVV6 1533 aa18.72■□□□□ 0.59
VPS29-208ENST00000550267 TSPOAP1O95153 1857 aa18.69■□□□□ 0.58
VPS29-208ENST00000550267 IGF1RP08069 1367 aa18.67■□□□□ 0.58
VPS29-208ENST00000550267 REM2Q8IYK8 340 aaPredicted RBP18.66■□□□□ 0.58
VPS29-208ENST00000550267 TTBK1Q5TCY1 1321 aaPredicted RBP18.64■□□□□ 0.57
VPS29-208ENST00000550267 CUL7Q14999 1698 aa18.63■□□□□ 0.57
VPS29-208ENST00000550267 PTPRGP23470 1445 aa18.63■□□□□ 0.57
VPS29-208ENST00000550267 KIF27Q86VH2 1401 aa18.62■□□□□ 0.57
VPS29-208ENST00000550267 ABCC2Q92887 1545 aa18.58■□□□□ 0.56
VPS29-208ENST00000550267 TNIKQ9UKE5 1360 aa18.56■□□□□ 0.56
VPS29-208ENST00000550267 ILDR1Q86SU0 546 aaPredicted RBP18.56■□□□□ 0.56
VPS29-208ENST00000550267 ASXL2Q76L83 1435 aa18.56■□□□□ 0.56
VPS29-208ENST00000550267 PPRC1Q5VV67 1664 aaKnown RBP18.54■□□□□ 0.56
VPS29-208ENST00000550267 CARMIL2Q6F5E8 1435 aa18.54■□□□□ 0.56
VPS29-208ENST00000550267 GLI2P10070 1586 aa18.54■□□□□ 0.56
VPS29-208ENST00000550267 CARMIL1Q5VZK9 1371 aa18.54■□□□□ 0.56
VPS29-208ENST00000550267 PLB1Q6P1J6 1458 aa18.53■□□□□ 0.56
VPS29-208ENST00000550267 ADGRL1O94910 1474 aa18.52■□□□□ 0.55
VPS29-208ENST00000550267 UHRF1BP1LA0JNW5 1464 aa18.49■□□□□ 0.55
VPS29-208ENST00000550267 IQGAP2Q13576 1575 aa18.49■□□□□ 0.55
VPS29-208ENST00000550267 UACAQ9BZF9 1416 aa18.48■□□□□ 0.55
VPS29-208ENST00000550267 COL17A1Q9UMD9 1497 aaPredicted RBP18.47■□□□□ 0.55
VPS29-208ENST00000550267 DISP1Q96F81 1524 aa18.45■□□□□ 0.54
VPS29-208ENST00000550267 PITPNM1O00562 1244 aa18.45■□□□□ 0.54
VPS29-208ENST00000550267 PIP4P2Q8N4L2 257 aa18.45■□□□□ 0.54
VPS29-208ENST00000550267 EPRSP07814 1512 aaKnown RBP18.44■□□□□ 0.54
VPS29-208ENST00000550267 MAP3K4Q9Y6R4 1608 aa18.42■□□□□ 0.54
VPS29-208ENST00000550267 SPDYE2BA6NHP3 402 aa18.42■□□□□ 0.54
VPS29-208ENST00000550267 SPDYE6P0CI01 402 aa18.42■□□□□ 0.54
VPS29-208ENST00000550267 SPDYE2Q495Y8 402 aa18.42■□□□□ 0.54
VPS29-208ENST00000550267 KDM5BQ9UGL1 1544 aa18.42■□□□□ 0.54
VPS29-208ENST00000550267 ZCCHC11Q5TAX3 1644 aaKnown RBP18.39■□□□□ 0.53
VPS29-208ENST00000550267 TEX14Q8IWB6 1497 aa18.39■□□□□ 0.53
VPS29-208ENST00000550267 HECW2Q9P2P5 1572 aa18.37■□□□□ 0.53
VPS29-208ENST00000550267 UGGT2Q9NYU1 1516 aa18.36■□□□□ 0.53
VPS29-208ENST00000550267 FXR2P51116 673 aaKnown RBP eCLIP18.35■□□□□ 0.53
VPS29-208ENST00000550267 KIAA0556O60303 1618 aa18.34■□□□□ 0.53
VPS29-208ENST00000550267 RAPGEF2Q9Y4G8 1499 aa18.32■□□□□ 0.52
VPS29-208ENST00000550267 MKRN4PQ13434 485 aaPredicted RBP18.31■□□□□ 0.52
VPS29-208ENST00000550267 WDR7Q9Y4E6 1490 aa18.31■□□□□ 0.52
VPS29-208ENST00000550267 SP7Q8TDD2 431 aaPredicted RBP18.28■□□□□ 0.52
VPS29-208ENST00000550267 CD109Q6YHK3 1445 aa18.24■□□□□ 0.51
VPS29-208ENST00000550267 MAGI3Q5TCQ9 1506 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms