RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KDM2AQ9Y2K7 1162 aa21.64■■□□□ 1.05
CUX1-211ENST00000546411 SMARCA2P51531 1590 aa21.63■■□□□ 1.05
CUX1-211ENST00000546411 SALL2Q9Y467 1007 aaPredicted RBP21.63■■□□□ 1.05
CUX1-211ENST00000546411 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.62■■□□□ 1.051e-6■■□□□ 14.2
CUX1-211ENST00000546411 TDRD9Q8NDG6 1382 aaKnown RBP21.56■■□□□ 1.04
CUX1-211ENST00000546411 MRS2Q9HD23 443 aa21.54■■□□□ 1.04
CUX1-211ENST00000546411 EIF4G2P78344 907 aaKnown RBP eCLIP21.52■■□□□ 1.041e-6■■■■■ 34
CUX1-211ENST00000546411 DAXXQ9UER7 740 aaPredicted RBP21.52■■□□□ 1.04
CUX1-211ENST00000546411 CLSPNQ9HAW4 1339 aa21.51■■□□□ 1.03
CUX1-211ENST00000546411 TSPY4P0CV99 314 aa21.51■■□□□ 1.03
CUX1-211ENST00000546411 TSPY10P0CW01 314 aa21.51■■□□□ 1.03
CUX1-211ENST00000546411 RAB3GAP2Q9H2M9 1393 aa21.48■■□□□ 1.03
CUX1-211ENST00000546411 FHAD1B1AJZ9 1412 aa21.45■■□□□ 1.02
CUX1-211ENST00000546411 CFDP1Q9UEE9 299 aaPredicted RBP21.44■■□□□ 1.02
CUX1-211ENST00000546411 FOXD1Q16676 465 aa21.44■■□□□ 1.02
CUX1-211ENST00000546411 KCNH8Q96L42 1107 aa21.44■■□□□ 1.02
CUX1-211ENST00000546411 CADPSQ9ULU8 1353 aa21.43■■□□□ 1.02
CUX1-211ENST00000546411 RGL3Q3MIN7 710 aa21.42■■□□□ 1.02
CUX1-211ENST00000546411 TMC1Q8TDI8 760 aa21.41■■□□□ 1.02
CUX1-211ENST00000546411 SETD5Q9C0A6 1442 aa21.4■■□□□ 1.02
CUX1-211ENST00000546411 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
CUX1-211ENST00000546411 CHGAP10645 457 aaKnown RBP21.39■■□□□ 1.02
CUX1-211ENST00000546411 FHOD3Q2V2M9 1422 aa21.39■■□□□ 1.02
CUX1-211ENST00000546411 PLEKHD1A6NEE1 506 aa21.39■■□□□ 1.01
CUX1-211ENST00000546411 DHX57Q6P158 1386 aaKnown RBP21.34■■□□□ 1.01
CUX1-211ENST00000546411 SUPT16HQ9Y5B9 1047 aaKnown RBP21.34■■□□□ 1.01
CUX1-211ENST00000546411 SENP3Q9H4L4 574 aaPredicted RBP21.33■■□□□ 1
CUX1-211ENST00000546411 NPM2Q86SE8 214 aaKnown RBP21.3■■□□□ 1
CUX1-211ENST00000546411 RTL5Q5HYW3 569 aaPredicted RBP21.29■■□□□ 1
CUX1-211ENST00000546411 ARHGAP35Q9NRY4 1499 aa21.28■■□□□ 1
CUX1-211ENST00000546411 BCL11AQ9H165 835 aa21.26■□□□□ 0.99
CUX1-211ENST00000546411 IGF1RP08069 1367 aa21.26■□□□□ 0.99
CUX1-211ENST00000546411 SYNJ1O43426 1573 aa21.25■□□□□ 0.99
CUX1-211ENST00000546411 PPP1R15AO75807 674 aaPredicted RBP21.22■□□□□ 0.99
CUX1-211ENST00000546411 CCDC136Q96JN2 1154 aa21.22■□□□□ 0.99
CUX1-211ENST00000546411 HSPA5P11021 654 aaKnown RBP21.2■□□□□ 0.98
CUX1-211ENST00000546411 CARD11Q9BXL7 1154 aa21.2■□□□□ 0.98
CUX1-211ENST00000546411 CANXP27824 592 aaKnown RBP21.18■□□□□ 0.98
CUX1-211ENST00000546411 KIF21BO75037 1637 aa21.18■□□□□ 0.98
CUX1-211ENST00000546411 ERCC6Q03468 1493 aa21.16■□□□□ 0.98
CUX1-211ENST00000546411 FANCD2Q9BXW9 1451 aa21.15■□□□□ 0.98
CUX1-211ENST00000546411 RAD54L2Q9Y4B4 1467 aa21.15■□□□□ 0.98
CUX1-211ENST00000546411 FMN1Q68DA7 1419 aa21.15■□□□□ 0.98
CUX1-211ENST00000546411 TIMELESSQ9UNS1 1208 aa21.15■□□□□ 0.98
CUX1-211ENST00000546411 MPHOSPH9Q99550 1183 aa21.13■□□□□ 0.97
CUX1-211ENST00000546411 PDS5BQ9NTI5 1447 aa21.13■□□□□ 0.97
CUX1-211ENST00000546411 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
CUX1-211ENST00000546411 ARAP1Q96P48 1450 aa21.12■□□□□ 0.97
CUX1-211ENST00000546411 ANP32AP39687 249 aaKnown RBP21.11■□□□□ 0.97
CUX1-211ENST00000546411 DCAF11Q8TEB1 546 aa21.1■□□□□ 0.97
CUX1-211ENST00000546411 NPM1P06748 294 aaKnown RBP eCLIP21.09■□□□□ 0.97
CUX1-211ENST00000546411 PKD2Q13563 968 aa21.09■□□□□ 0.97
CUX1-211ENST00000546411 L3MBTL2Q969R5 705 aa21.09■□□□□ 0.97
CUX1-211ENST00000546411 NCAPD3P42695 1498 aa21.09■□□□□ 0.97
CUX1-211ENST00000546411 PHLDB1Q86UU1 1377 aa21.06■□□□□ 0.96
CUX1-211ENST00000546411 B4GALNT3Q6L9W6 998 aa21.02■□□□□ 0.96
CUX1-211ENST00000546411 WDR43Q15061 677 aaKnown RBP eCLIP21.02■□□□□ 0.95
CUX1-211ENST00000546411 PLPPR3Q6T4P5 718 aa21.01■□□□□ 0.95
CUX1-211ENST00000546411 NBR1Q14596 966 aa21.01■□□□□ 0.95
CUX1-211ENST00000546411 CCER2I3L3R5 266 aa21■□□□□ 0.95
CUX1-211ENST00000546411 STAG3Q9UJ98 1225 aa20.98■□□□□ 0.95
CUX1-211ENST00000546411 CC2D1BQ5T0F9 858 aaKnown RBP20.97■□□□□ 0.95
CUX1-211ENST00000546411 PRXQ9BXM0 1461 aa20.95■□□□□ 0.94
CUX1-211ENST00000546411 BICRAQ9NZM4 1560 aa20.95■□□□□ 0.94
CUX1-211ENST00000546411 CFTRP13569 1480 aa20.94■□□□□ 0.94
CUX1-211ENST00000546411 HNRNPMP52272 730 aaKnown RBP eCLIP20.93■□□□□ 0.949e-7■■■□□ 19.2
CUX1-211ENST00000546411 CUX1P39880 1505 aa20.92■□□□□ 0.94
CUX1-211ENST00000546411 ZNF644Q9H582 1327 aaPredicted RBP20.92■□□□□ 0.94
CUX1-211ENST00000546411 SLC24A1O60721 1099 aa20.92■□□□□ 0.94
CUX1-211ENST00000546411 NESP48681 1621 aa20.92■□□□□ 0.94
CUX1-211ENST00000546411 NUP155O75694 1391 aa20.91■□□□□ 0.94
CUX1-211ENST00000546411 JPH4Q96JJ6 628 aa20.9■□□□□ 0.94
CUX1-211ENST00000546411 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
CUX1-211ENST00000546411 LRRC9Q6ZRR7 1453 aa20.87■□□□□ 0.93
CUX1-211ENST00000546411 NEFMP07197 916 aa20.86■□□□□ 0.93
CUX1-211ENST00000546411 KNSTRNQ9Y448 316 aa20.86■□□□□ 0.93
CUX1-211ENST00000546411 GAPVD1Q14C86 1478 aa20.85■□□□□ 0.93
CUX1-211ENST00000546411 PPP4R2Q9NY27 417 aa20.85■□□□□ 0.93
CUX1-211ENST00000546411 TOP2BQ02880 1626 aa20.85■□□□□ 0.93
CUX1-211ENST00000546411 TNNT2P45379 298 aaPredicted RBP20.85■□□□□ 0.93
CUX1-211ENST00000546411 CCDC18Q5T9S5 1454 aa20.85■□□□□ 0.93
CUX1-211ENST00000546411 NEUROD2Q15784 382 aa20.84■□□□□ 0.93
CUX1-211ENST00000546411 ZBTB47Q9UFB7 747 aaPredicted RBP20.83■□□□□ 0.93
CUX1-211ENST00000546411 TSHZ2Q9NRE2 1034 aa20.83■□□□□ 0.92
CUX1-211ENST00000546411 AQRO60306 1485 aaKnown RBP eCLIP20.82■□□□□ 0.924e-7■■■■□ 26.1
CUX1-211ENST00000546411 ESF1Q9H501 851 aaKnown RBP20.81■□□□□ 0.92
CUX1-211ENST00000546411 FGD6Q6ZV73 1430 aa20.81■□□□□ 0.92
CUX1-211ENST00000546411 RBM19Q9Y4C8 960 aaKnown RBP20.81■□□□□ 0.92
CUX1-211ENST00000546411 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
CUX1-211ENST00000546411 CARMIL2Q6F5E8 1435 aa20.8■□□□□ 0.92
CUX1-211ENST00000546411 RRBP1Q9P2E9 1410 aaKnown RBP20.79■□□□□ 0.92
CUX1-211ENST00000546411 ANP32EQ9BTT0 268 aa20.77■□□□□ 0.92
CUX1-211ENST00000546411 ANKRD30AQ9BXX3 1397 aa20.76■□□□□ 0.91
CUX1-211ENST00000546411 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.74■□□□□ 0.91
CUX1-211ENST00000546411 ST20-MTHFSA0A0A6YYL1 179 aa20.72■□□□□ 0.91
CUX1-211ENST00000546411 TMF1P82094 1093 aa20.7■□□□□ 0.91
CUX1-211ENST00000546411 MYOM3Q5VTT5 1437 aa20.7■□□□□ 0.9
CUX1-211ENST00000546411 PRKRIP1Q9H875 184 aaPredicted RBP20.7■□□□□ 0.9
CUX1-211ENST00000546411 ROCK2O75116 1388 aaKnown RBP20.7■□□□□ 0.9
CUX1-211ENST00000546411 SAFB2Q14151 953 aaKnown RBP eCLIP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms