RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 YTHDC1Q96MU7 727 aaKnown RBP20.06■□□□□ 0.8
VPS33A-208ENST00000543633 KANK4Q5T7N3 995 aaPredicted RBP20.05■□□□□ 0.8
VPS33A-208ENST00000543633 TIAM1Q13009 1591 aa20.05■□□□□ 0.8
VPS33A-208ENST00000543633 RANGAP1P46060 587 aaPredicted RBP20.02■□□□□ 0.8
VPS33A-208ENST00000543633 MRC2Q9UBG0 1479 aa20.02■□□□□ 0.8
VPS33A-208ENST00000543633 CFAP43Q8NDM7 1665 aa20■□□□□ 0.79
VPS33A-208ENST00000543633 RAD54L2Q9Y4B4 1467 aa19.99■□□□□ 0.79
VPS33A-208ENST00000543633 ABCA10Q8WWZ4 1543 aa19.97■□□□□ 0.79
VPS33A-208ENST00000543633 IGF1RP08069 1367 aa19.95■□□□□ 0.78
VPS33A-208ENST00000543633 WDR62O43379 1518 aa19.94■□□□□ 0.78
VPS33A-208ENST00000543633 ERCC6Q03468 1493 aa19.94■□□□□ 0.78
VPS33A-208ENST00000543633 WDR97A6NE52 1622 aa19.93■□□□□ 0.78
VPS33A-208ENST00000543633 FHAD1B1AJZ9 1412 aa19.92■□□□□ 0.78
VPS33A-208ENST00000543633 MAPKBP1O60336 1514 aa19.91■□□□□ 0.78
VPS33A-208ENST00000543633 LRRC9Q6ZRR7 1453 aa19.91■□□□□ 0.78
VPS33A-208ENST00000543633 THOC2Q8NI27 1593 aaKnown RBP19.9■□□□□ 0.78
VPS33A-208ENST00000543633 TARBP1Q13395 1621 aaKnown RBP19.89■□□□□ 0.77
VPS33A-208ENST00000543633 CARMIL1Q5VZK9 1371 aa19.88■□□□□ 0.77
VPS33A-208ENST00000543633 RAB3GAP2Q9H2M9 1393 aa19.87■□□□□ 0.77
VPS33A-208ENST00000543633 EFCAB5A4FU69 1503 aa19.86■□□□□ 0.77
VPS33A-208ENST00000543633 SETD5Q9C0A6 1442 aa19.85■□□□□ 0.77
VPS33A-208ENST00000543633 PCF11O94913 1555 aaKnown RBP19.84■□□□□ 0.77
VPS33A-208ENST00000543633 ABCA5Q8WWZ7 1642 aa19.82■□□□□ 0.76
VPS33A-208ENST00000543633 AQRO60306 1485 aaKnown RBP eCLIP19.82■□□□□ 0.76
VPS33A-208ENST00000543633 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.82■□□□□ 0.76
VPS33A-208ENST00000543633 FYCO1Q9BQS8 1478 aa19.81■□□□□ 0.76
VPS33A-208ENST00000543633 CUL7Q14999 1698 aa19.8■□□□□ 0.76
VPS33A-208ENST00000543633 TDRD9Q8NDG6 1382 aaKnown RBP19.79■□□□□ 0.76
VPS33A-208ENST00000543633 TIMELESSQ9UNS1 1208 aa19.78■□□□□ 0.76
VPS33A-208ENST00000543633 CTTNBP2Q8WZ74 1663 aa19.77■□□□□ 0.76
VPS33A-208ENST00000543633 PHLDB1Q86UU1 1377 aa19.76■□□□□ 0.75
VPS33A-208ENST00000543633 IFT140Q96RY7 1462 aa19.76■□□□□ 0.75
VPS33A-208ENST00000543633 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
VPS33A-208ENST00000543633 CASKIN1Q8WXD9 1431 aa19.72■□□□□ 0.75
VPS33A-208ENST00000543633 SUPT16HQ9Y5B9 1047 aaKnown RBP19.71■□□□□ 0.75
VPS33A-208ENST00000543633 ZNF608Q9ULD9 1512 aaPredicted RBP19.69■□□□□ 0.74
VPS33A-208ENST00000543633 ITGAEP38570 1179 aa19.66■□□□□ 0.74
VPS33A-208ENST00000543633 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
VPS33A-208ENST00000543633 FMN1Q68DA7 1419 aa19.63■□□□□ 0.73
VPS33A-208ENST00000543633 GRIN2BQ13224 1484 aa19.61■□□□□ 0.73
VPS33A-208ENST00000543633 EIF4G3O43432 1585 aaKnown RBP19.61■□□□□ 0.73
VPS33A-208ENST00000543633 FHOD3Q2V2M9 1422 aa19.6■□□□□ 0.73
VPS33A-208ENST00000543633 SNAPC4Q5SXM2 1469 aa19.59■□□□□ 0.73
VPS33A-208ENST00000543633 SAMD9Q5K651 1589 aa19.59■□□□□ 0.73
VPS33A-208ENST00000543633 FGD6Q6ZV73 1430 aa19.58■□□□□ 0.73
VPS33A-208ENST00000543633 FAM50AQ14320 339 aaKnown RBP19.57■□□□□ 0.72
VPS33A-208ENST00000543633 ADAMTS12P58397 1594 aa19.55■□□□□ 0.72
VPS33A-208ENST00000543633 HFM1A2PYH4 1435 aa19.53■□□□□ 0.72
VPS33A-208ENST00000543633 PTPN23Q9H3S7 1636 aa19.52■□□□□ 0.72
VPS33A-208ENST00000543633 CCER2I3L3R5 266 aa19.52■□□□□ 0.72
VPS33A-208ENST00000543633 PPP1R15AO75807 674 aaPredicted RBP19.52■□□□□ 0.72
VPS33A-208ENST00000543633 CCDC18Q5T9S5 1454 aa19.52■□□□□ 0.71
VPS33A-208ENST00000543633 UACAQ9BZF9 1416 aa19.51■□□□□ 0.71
VPS33A-208ENST00000543633 EHBP1L1Q8N3D4 1523 aa19.5■□□□□ 0.71
VPS33A-208ENST00000543633 SUPT6HQ7KZ85 1726 aaKnown RBP19.5■□□□□ 0.71
VPS33A-208ENST00000543633 LRRIQ1Q96JM4 1722 aa19.49■□□□□ 0.71
VPS33A-208ENST00000543633 SIN3AQ96ST3 1273 aa19.47■□□□□ 0.71
VPS33A-208ENST00000543633 MAGI1Q96QZ7 1491 aaPredicted RBP19.45■□□□□ 0.7
VPS33A-208ENST00000543633 MYOM3Q5VTT5 1437 aa19.45■□□□□ 0.7
VPS33A-208ENST00000543633 MTUS2Q5JR59 1369 aa19.44■□□□□ 0.7
VPS33A-208ENST00000543633 ARHGEF11O15085 1522 aa19.44■□□□□ 0.7
VPS33A-208ENST00000543633 DDX10Q13206 875 aaKnown RBP19.43■□□□□ 0.7
VPS33A-208ENST00000543633 GCC2Q8IWJ2 1684 aa19.43■□□□□ 0.7
VPS33A-208ENST00000543633 P3H3Q8IVL6 736 aa19.42■□□□□ 0.7
VPS33A-208ENST00000543633 TSHZ2Q9NRE2 1034 aa19.42■□□□□ 0.7
VPS33A-208ENST00000543633 NCOA2Q15596 1464 aa19.42■□□□□ 0.7
VPS33A-208ENST00000543633 TONSLQ96HA7 1378 aa19.42■□□□□ 0.7
VPS33A-208ENST00000543633 UGGT2Q9NYU1 1516 aa19.41■□□□□ 0.7
VPS33A-208ENST00000543633 NAIPQ13075 1403 aa19.4■□□□□ 0.7
VPS33A-208ENST00000543633 AKNAQ7Z591 1439 aa19.4■□□□□ 0.7
VPS33A-208ENST00000543633 HECW1Q76N89 1606 aa19.4■□□□□ 0.7
VPS33A-208ENST00000543633 KCNH8Q96L42 1107 aa19.4■□□□□ 0.7
VPS33A-208ENST00000543633 SYNJ2O15056 1496 aa19.38■□□□□ 0.69
VPS33A-208ENST00000543633 GRIN2AQ12879 1464 aa19.38■□□□□ 0.69
VPS33A-208ENST00000543633 TCOF1Q13428 1488 aaKnown RBP19.38■□□□□ 0.69
VPS33A-208ENST00000543633 ANP32CO43423 234 aa19.37■□□□□ 0.69
VPS33A-208ENST00000543633 PTPRKQ15262 1439 aa19.37■□□□□ 0.69
VPS33A-208ENST00000543633 ATP1B4Q9UN42 357 aaPredicted RBP19.37■□□□□ 0.69
VPS33A-208ENST00000543633 KDM5BQ9UGL1 1544 aa19.37■□□□□ 0.69
VPS33A-208ENST00000543633 IQGAP2Q13576 1575 aa19.31■□□□□ 0.68
VPS33A-208ENST00000543633 NEFLP07196 543 aa19.3■□□□□ 0.68
VPS33A-208ENST00000543633 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
VPS33A-208ENST00000543633 KIAA0586Q9BVV6 1533 aa19.28■□□□□ 0.68
VPS33A-208ENST00000543633 CEP170Q5SW79 1584 aa19.28■□□□□ 0.68
VPS33A-208ENST00000543633 FKBP8Q14318 412 aa19.27■□□□□ 0.67
VPS33A-208ENST00000543633 MAGI3Q5TCQ9 1506 aa19.26■□□□□ 0.67
VPS33A-208ENST00000543633 NUP160Q12769 1436 aa19.26■□□□□ 0.67
VPS33A-208ENST00000543633 MIA2Q96PC5 1412 aa19.26■□□□□ 0.67
VPS33A-208ENST00000543633 FBLN2P98095 1184 aa19.23■□□□□ 0.67
VPS33A-208ENST00000543633 ANP32EQ9BTT0 268 aa19.19■□□□□ 0.66
VPS33A-208ENST00000543633 EPRSP07814 1512 aaKnown RBP19.19■□□□□ 0.66
VPS33A-208ENST00000543633 CHD1O14646 1710 aa19.19■□□□□ 0.66
VPS33A-208ENST00000543633 DENND4BO75064 1496 aaPredicted RBP19.19■□□□□ 0.66
VPS33A-208ENST00000543633 POLR1AO95602 1720 aaPredicted RBP19.16■□□□□ 0.66
VPS33A-208ENST00000543633 HIRIP3Q9BW71 556 aaPredicted RBP19.15■□□□□ 0.66
VPS33A-208ENST00000543633 DISP1Q96F81 1524 aa19.15■□□□□ 0.66
VPS33A-208ENST00000543633 ROCK1Q13464 1354 aa19.13■□□□□ 0.65
VPS33A-208ENST00000543633 BCANQ96GW7 911 aa19.13■□□□□ 0.65
VPS33A-208ENST00000543633 CNTLNQ9NXG0 1405 aa19.13■□□□□ 0.65
VPS33A-208ENST00000543633 KDM6BO15054 1643 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms