RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 NISCHQ9Y2I1 1504 aa28.19■■■□□ 2.1
VPS33A-208ENST00000543633 CCDC180Q9P1Z9 1646 aa24.6■■□□□ 1.53
VPS33A-208ENST00000543633 ZCCHC6Q5VYS8 1495 aaKnown RBP23.9■■□□□ 1.42
VPS33A-208ENST00000543633 SHROOM4Q9ULL8 1493 aa23.7■■□□□ 1.38
VPS33A-208ENST00000543633 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
VPS33A-208ENST00000543633 DCAF1Q9Y4B6 1507 aa23.33■■□□□ 1.32
VPS33A-208ENST00000543633 ABCC9O60706 1549 aa23.29■■□□□ 1.32
VPS33A-208ENST00000543633 DCAF8L2P0C7V8 631 aa23.2■■□□□ 1.3
VPS33A-208ENST00000543633 MYO15BQ96JP2 1530 aa23.08■■□□□ 1.28
VPS33A-208ENST00000543633 CHIC1Q5VXU3 224 aa22.99■■□□□ 1.27
VPS33A-208ENST00000543633 NACADO15069 1562 aa22.92■■□□□ 1.26
VPS33A-208ENST00000543633 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
VPS33A-208ENST00000543633 HRCP23327 699 aa22.7■■□□□ 1.23
VPS33A-208ENST00000543633 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
VPS33A-208ENST00000543633 PCGF6Q9BYE7 350 aa22.33■■□□□ 1.17
VPS33A-208ENST00000543633 UNC13AQ9UPW8 1703 aa22.31■■□□□ 1.16
VPS33A-208ENST00000543633 RSF1Q96T23 1441 aaPredicted RBP22.25■■□□□ 1.15
VPS33A-208ENST00000543633 LOC105371045A0A1W2PR82 267 aa22.11■■□□□ 1.13
VPS33A-208ENST00000543633 BICRAQ9NZM4 1560 aa22.11■■□□□ 1.13
VPS33A-208ENST00000543633 TRIM26Q12899 539 aaPredicted RBP22.09■■□□□ 1.13
VPS33A-208ENST00000543633 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
VPS33A-208ENST00000543633 CECR2Q9BXF3 1484 aa21.93■■□□□ 1.1
VPS33A-208ENST00000543633 PPARGC1BQ86YN6 1023 aaKnown RBP21.9■■□□□ 1.1
VPS33A-208ENST00000543633 TRIM41Q8WV44 630 aa21.87■■□□□ 1.09
VPS33A-208ENST00000543633 ZEB1P37275 1124 aaPredicted RBP21.84■■□□□ 1.09
VPS33A-208ENST00000543633 MROH2BQ7Z745 1585 aa21.79■■□□□ 1.08
VPS33A-208ENST00000543633 BAZ1AQ9NRL2 1556 aaPredicted RBP21.76■■□□□ 1.07
VPS33A-208ENST00000543633 EIF4G1Q04637 1599 aaKnown RBP21.69■■□□□ 1.06
VPS33A-208ENST00000543633 WIZO95785 1651 aa21.69■■□□□ 1.06
VPS33A-208ENST00000543633 SMARCA4P51532 1647 aa21.68■■□□□ 1.06
VPS33A-208ENST00000543633 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
VPS33A-208ENST00000543633 FAM9AQ8IZU1 332 aaPredicted RBP21.48■■□□□ 1.03
VPS33A-208ENST00000543633 PEG3Q9GZU2 1588 aa21.45■■□□□ 1.02
VPS33A-208ENST00000543633 ATAD2BQ9ULI0 1458 aa21.35■■□□□ 1.01
VPS33A-208ENST00000543633 SMARCA2P51531 1590 aa21.34■■□□□ 1.01
VPS33A-208ENST00000543633 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1
VPS33A-208ENST00000543633 EEA1Q15075 1411 aa21.27■□□□□ 0.99
VPS33A-208ENST00000543633 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
VPS33A-208ENST00000543633 ABCC8Q09428 1581 aa21.2■□□□□ 0.98
VPS33A-208ENST00000543633 BAZ1BQ9UIG0 1483 aaKnown RBP21.18■□□□□ 0.98
VPS33A-208ENST00000543633 NCAPD3P42695 1498 aa21.18■□□□□ 0.98
VPS33A-208ENST00000543633 TNIKQ9UKE5 1360 aa21.15■□□□□ 0.98
VPS33A-208ENST00000543633 HMGXB3Q12766 1538 aa21.13■□□□□ 0.97
VPS33A-208ENST00000543633 CEP162Q5TB80 1403 aa21.13■□□□□ 0.97
VPS33A-208ENST00000543633 PELP1Q8IZL8 1130 aaKnown RBP21.11■□□□□ 0.97
VPS33A-208ENST00000543633 EHMT2Q96KQ7 1210 aa21.11■□□□□ 0.97
VPS33A-208ENST00000543633 CC2D2AQ9P2K1 1620 aa21.1■□□□□ 0.97
VPS33A-208ENST00000543633 GOLGA3Q08378 1498 aa21.01■□□□□ 0.95
VPS33A-208ENST00000543633 SOGA1O94964 1423 aa21.01■□□□□ 0.95
VPS33A-208ENST00000543633 CCER1Q8TC90 406 aaPredicted RBP20.99■□□□□ 0.95
VPS33A-208ENST00000543633 KIF21BO75037 1637 aa20.96■□□□□ 0.95
VPS33A-208ENST00000543633 CSRNP3Q8WYN3 585 aa20.94■□□□□ 0.94
VPS33A-208ENST00000543633 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.94■□□□□ 0.94
VPS33A-208ENST00000543633 SCAF1Q9H7N4 1312 aaKnown RBP20.93■□□□□ 0.94
VPS33A-208ENST00000543633 CEP164Q9UPV0 1460 aa20.89■□□□□ 0.93
VPS33A-208ENST00000543633 RUSC2Q8N2Y8 1516 aa20.86■□□□□ 0.93
VPS33A-208ENST00000543633 SYNJ1O43426 1573 aa20.82■□□□□ 0.92
VPS33A-208ENST00000543633 ACIN1Q9UKV3 1341 aaKnown RBP20.77■□□□□ 0.92
VPS33A-208ENST00000543633 UBTFP17480 764 aaKnown RBP20.75■□□□□ 0.91
VPS33A-208ENST00000543633 DIEXFQ68CQ4 756 aaKnown RBP20.74■□□□□ 0.91
VPS33A-208ENST00000543633 VPS8Q8N3P4 1428 aa20.7■□□□□ 0.9
VPS33A-208ENST00000543633 CENPBP07199 599 aaPredicted RBP20.7■□□□□ 0.9
VPS33A-208ENST00000543633 CFTRP13569 1480 aa20.69■□□□□ 0.9
VPS33A-208ENST00000543633 CLIP1P30622 1438 aa20.69■□□□□ 0.9
VPS33A-208ENST00000543633 TOP2BQ02880 1626 aa20.66■□□□□ 0.9
VPS33A-208ENST00000543633 DNAJC5BQ9UF47 199 aa20.65■□□□□ 0.9
VPS33A-208ENST00000543633 BIVM-ERCC5R4GMW8 1640 aa20.65■□□□□ 0.9
VPS33A-208ENST00000543633 CADPSQ9ULU8 1353 aa20.61■□□□□ 0.89
VPS33A-208ENST00000543633 NEUROD1Q13562 356 aa20.6■□□□□ 0.89
VPS33A-208ENST00000543633 ZNF316A6NFI3 1004 aaPredicted RBP20.6■□□□□ 0.89
VPS33A-208ENST00000543633 ERICH3Q5RHP9 1530 aa20.59■□□□□ 0.89
VPS33A-208ENST00000543633 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
VPS33A-208ENST00000543633 TTBK1Q5TCY1 1321 aaPredicted RBP20.56■□□□□ 0.88
VPS33A-208ENST00000543633 RAPGEF2Q9Y4G8 1499 aa20.55■□□□□ 0.88
VPS33A-208ENST00000543633 NESP48681 1621 aa20.46■□□□□ 0.87
VPS33A-208ENST00000543633 PRXQ9BXM0 1461 aa20.45■□□□□ 0.86
VPS33A-208ENST00000543633 CLSPNQ9HAW4 1339 aa20.45■□□□□ 0.86
VPS33A-208ENST00000543633 LAMC3Q9Y6N6 1575 aa20.44■□□□□ 0.86
VPS33A-208ENST00000543633 APLP2Q06481 763 aa20.44■□□□□ 0.86
VPS33A-208ENST00000543633 GTF3C3Q9Y5Q9 886 aa20.42■□□□□ 0.86
VPS33A-208ENST00000543633 FANCD2Q9BXW9 1451 aa20.38■□□□□ 0.85
VPS33A-208ENST00000543633 CUX1P39880 1505 aa20.37■□□□□ 0.85
VPS33A-208ENST00000543633 ARAP1Q96P48 1450 aa20.37■□□□□ 0.85
VPS33A-208ENST00000543633 HNRNPUL2Q1KMD3 747 aaKnown RBP20.36■□□□□ 0.85
VPS33A-208ENST00000543633 CUX2O14529 1486 aa20.28■□□□□ 0.84
VPS33A-208ENST00000543633 RRBP1Q9P2E9 1410 aaKnown RBP20.28■□□□□ 0.84
VPS33A-208ENST00000543633 KIF27Q86VH2 1401 aa20.28■□□□□ 0.84
VPS33A-208ENST00000543633 PDS5BQ9NTI5 1447 aa20.26■□□□□ 0.83
VPS33A-208ENST00000543633 DHX57Q6P158 1386 aaKnown RBP20.24■□□□□ 0.83
VPS33A-208ENST00000543633 KIF21AQ7Z4S6 1674 aa20.21■□□□□ 0.83
VPS33A-208ENST00000543633 MIER1Q8N108 512 aa20.2■□□□□ 0.83
VPS33A-208ENST00000543633 DNMBPQ6XZF7 1577 aa20.18■□□□□ 0.82
VPS33A-208ENST00000543633 MAP3K1Q13233 1512 aa20.18■□□□□ 0.82
VPS33A-208ENST00000543633 MYT1Q01538 1121 aa20.17■□□□□ 0.82
VPS33A-208ENST00000543633 TOPBP1Q92547 1522 aa20.16■□□□□ 0.82
VPS33A-208ENST00000543633 URB2Q14146 1524 aaKnown RBP20.15■□□□□ 0.82
VPS33A-208ENST00000543633 ARHGAP35Q9NRY4 1499 aa20.14■□□□□ 0.81
VPS33A-208ENST00000543633 FGD5Q6ZNL6 1462 aa20.13■□□□□ 0.81
VPS33A-208ENST00000543633 CCNB3Q8WWL7 1395 aa20.08■□□□□ 0.81
VPS33A-208ENST00000543633 POLA1P09884 1462 aaPredicted RBP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms