RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 PRG4Q92954 1404 aaPredicted RBP6.42□□□□□ -1.38
CHD4-209ENST00000542717 TOP2AP11388 1531 aaKnown RBP6.4□□□□□ -1.38
CHD4-209ENST00000542717 FGD5Q6ZNL6 1462 aa6.4□□□□□ -1.39
CHD4-209ENST00000542717 GRIN2AQ12879 1464 aa6.39□□□□□ -1.39
CHD4-209ENST00000542717 JPH4Q96JJ6 628 aa6.38□□□□□ -1.39
CHD4-209ENST00000542717 PBRM1Q86U86 1689 aa6.38□□□□□ -1.39
CHD4-209ENST00000542717 COL17A1Q9UMD9 1497 aaPredicted RBP6.37□□□□□ -1.39
CHD4-209ENST00000542717 HSPA2P54652 639 aa6.37□□□□□ -1.39
CHD4-209ENST00000542717 SHROOM2Q13796 1616 aa6.36□□□□□ -1.39
CHD4-209ENST00000542717 CCDC88BA6NC98 1476 aa6.36□□□□□ -1.39
CHD4-209ENST00000542717 NUP160Q12769 1436 aa6.36□□□□□ -1.39
CHD4-209ENST00000542717 ADCY10Q96PN6 1610 aa6.36□□□□□ -1.39
CHD4-209ENST00000542717 PCF11O94913 1555 aaKnown RBP6.35□□□□□ -1.39
CHD4-209ENST00000542717 TTBK1Q5TCY1 1321 aaPredicted RBP6.35□□□□□ -1.39
CHD4-209ENST00000542717 PLPPR3Q6T4P5 718 aa6.35□□□□□ -1.39
CHD4-209ENST00000542717 PTPRMP28827 1452 aa6.34□□□□□ -1.39
CHD4-209ENST00000542717 TEX14Q8IWB6 1497 aa6.33□□□□□ -1.4
CHD4-209ENST00000542717 PPRC1Q5VV67 1664 aaKnown RBP6.33□□□□□ -1.4
CHD4-209ENST00000542717 ASXL2Q76L83 1435 aa6.31□□□□□ -1.4
CHD4-209ENST00000542717 ARID4BQ4LE39 1312 aaPredicted RBP6.3□□□□□ -1.4
CHD4-209ENST00000542717 PLB1Q6P1J6 1458 aa6.3□□□□□ -1.4
CHD4-209ENST00000542717 KIF21BO75037 1637 aa6.3□□□□□ -1.4
CHD4-209ENST00000542717 GLI2P10070 1586 aa6.29□□□□□ -1.4
CHD4-209ENST00000542717 ADAMTS12P58397 1594 aa6.29□□□□□ -1.4
CHD4-209ENST00000542717 PHF23Q9BUL5 403 aaPredicted RBP6.29□□□□□ -1.4
CHD4-209ENST00000542717 FHAD1B1AJZ9 1412 aa6.28□□□□□ -1.4
CHD4-209ENST00000542717 CUX1P39880 1505 aa6.27□□□□□ -1.41
CHD4-209ENST00000542717 DMRT2Q9Y5R5 561 aa6.27□□□□□ -1.41
CHD4-209ENST00000542717 ABCA5Q8WWZ7 1642 aa6.27□□□□□ -1.41
CHD4-209ENST00000542717 PTPRGP23470 1445 aa6.25□□□□□ -1.41
CHD4-209ENST00000542717 ABCA10Q8WWZ4 1543 aa6.25□□□□□ -1.41
CHD4-209ENST00000542717 ABCC2Q92887 1545 aa6.25□□□□□ -1.41
CHD4-209ENST00000542717 ADAMTSL3P82987 1691 aa6.24□□□□□ -1.41
CHD4-209ENST00000542717 MAP3K4Q9Y6R4 1608 aa6.24□□□□□ -1.41
CHD4-209ENST00000542717 EPRSP07814 1512 aaKnown RBP6.24□□□□□ -1.41
CHD4-209ENST00000542717 UBAP1LF5GYI3 381 aa6.23□□□□□ -1.41
CHD4-209ENST00000542717 KIAA0586Q9BVV6 1533 aa6.23□□□□□ -1.41
CHD4-209ENST00000542717 MADDQ8WXG6 1647 aa6.22□□□□□ -1.41
CHD4-209ENST00000542717 SCAF1Q9H7N4 1312 aaKnown RBP6.22□□□□□ -1.41
CHD4-209ENST00000542717 CUL7Q14999 1698 aa6.21□□□□□ -1.42
CHD4-209ENST00000542717 RIMS1Q86UR5 1692 aaKnown RBP6.2□□□□□ -1.42
CHD4-209ENST00000542717 RUSC2Q8N2Y8 1516 aa6.2□□□□□ -1.42
CHD4-209ENST00000542717 MED1Q15648 1581 aaPredicted RBP6.2□□□□□ -1.42
CHD4-209ENST00000542717 KCNH8Q96L42 1107 aa6.2□□□□□ -1.42
CHD4-209ENST00000542717 CD109Q6YHK3 1445 aa6.19□□□□□ -1.42
CHD4-209ENST00000542717 YEATS2Q9ULM3 1422 aa6.19□□□□□ -1.42
CHD4-209ENST00000542717 BCORL1Q5H9F3 1711 aa6.19□□□□□ -1.42
CHD4-209ENST00000542717 ERICH3Q5RHP9 1530 aa6.17□□□□□ -1.42
CHD4-209ENST00000542717 TNIKQ9UKE5 1360 aa6.17□□□□□ -1.42
CHD4-209ENST00000542717 WRNQ14191 1432 aaPredicted RBP eCLIP6.16□□□□□ -1.42
CHD4-209ENST00000542717 CARMIL2Q6F5E8 1435 aa6.16□□□□□ -1.42
CHD4-209ENST00000542717 HSPA1LP34931 641 aa6.16□□□□□ -1.42
CHD4-209ENST00000542717 MLECQ14165 292 aa6.16□□□□□ -1.42
CHD4-209ENST00000542717 UACAQ9BZF9 1416 aa6.16□□□□□ -1.42
CHD4-209ENST00000542717 IQSEC2Q5JU85 1478 aa6.15□□□□□ -1.42
CHD4-209ENST00000542717 MAGI3Q5TCQ9 1506 aa6.15□□□□□ -1.42
CHD4-209ENST00000542717 CFAP43Q8NDM7 1665 aa6.15□□□□□ -1.42
CHD4-209ENST00000542717 RAPGEF3O95398 923 aa6.15□□□□□ -1.42
CHD4-209ENST00000542717 PIP4K2BP78356 416 aa6.15□□□□□ -1.42
CHD4-209ENST00000542717 UHRF1BP1LA0JNW5 1464 aa6.15□□□□□ -1.43
CHD4-209ENST00000542717 WDR7Q9Y4E6 1490 aa6.14□□□□□ -1.43
CHD4-209ENST00000542717 POGZQ7Z3K3 1410 aa6.13□□□□□ -1.43
CHD4-209ENST00000542717 KDM5BQ9UGL1 1544 aa6.13□□□□□ -1.43
CHD4-209ENST00000542717 PTPRTO14522 1441 aa6.12□□□□□ -1.43
CHD4-209ENST00000542717 ZCCHC11Q5TAX3 1644 aaKnown RBP6.12□□□□□ -1.43
CHD4-209ENST00000542717 LTBP4Q8N2S1 1624 aa6.12□□□□□ -1.43
CHD4-209ENST00000542717 ARAP3Q8WWN8 1544 aa6.12□□□□□ -1.43
CHD4-209ENST00000542717 SENP3Q9H4L4 574 aaPredicted RBP6.12□□□□□ -1.43
CHD4-209ENST00000542717 STRCQ7RTU9 1775 aa6.11□□□□□ -1.43
CHD4-209ENST00000542717 CEBPAP49715 358 aaPredicted RBP6.11□□□□□ -1.43
CHD4-209ENST00000542717 UHRF1BP1Q6BDS2 1440 aa6.1□□□□□ -1.43
CHD4-209ENST00000542717 PREX1Q8TCU6 1659 aa6.1□□□□□ -1.43
CHD4-209ENST00000542717 TOM1O60784 492 aa6.09□□□□□ -1.43
CHD4-209ENST00000542717 FANCAO15360 1455 aa6.09□□□□□ -1.44
CHD4-209ENST00000542717 PHLDB1Q86UU1 1377 aa6.08□□□□□ -1.44
CHD4-209ENST00000542717 ZNF335Q9H4Z2 1342 aaPredicted RBP6.08□□□□□ -1.44
CHD4-209ENST00000542717 FER1L4A9Z1Z3 1794 aa6.06□□□□□ -1.44
CHD4-209ENST00000542717 RGS17Q9UGC6 210 aaPredicted RBP6.05□□□□□ -1.44
CHD4-209ENST00000542717 AKNAQ7Z591 1439 aa6.05□□□□□ -1.44
CHD4-209ENST00000542717 ARID3CA6NKF2 412 aa6.04□□□□□ -1.44
CHD4-209ENST00000542717 TTC37Q6PGP7 1564 aa6.04□□□□□ -1.44
CHD4-209ENST00000542717 ARHGEF40Q8TER5 1519 aa6.04□□□□□ -1.44
CHD4-209ENST00000542717 POTEAQ6S8J7 498 aa6.03□□□□□ -1.44
CHD4-209ENST00000542717 ESF1Q9H501 851 aaKnown RBP6.02□□□□□ -1.45
CHD4-209ENST00000542717 SETD1BQ9UPS6 1966 aaKnown RBP6.02□□□□□ -1.45
CHD4-209ENST00000542717 NEO1Q92859 1461 aa6.02□□□□□ -1.45
CHD4-209ENST00000542717 NCKAP5LQ9HCH0 1330 aa6.01□□□□□ -1.45
CHD4-209ENST00000542717 DENND4BO75064 1496 aaPredicted RBP6.01□□□□□ -1.45
CHD4-209ENST00000542717 IQGAP2Q13576 1575 aa6.01□□□□□ -1.45
CHD4-209ENST00000542717 FRMPD1Q5SYB0 1578 aa6.01□□□□□ -1.45
CHD4-209ENST00000542717 NCOA1Q15788 1441 aa6□□□□□ -1.45
CHD4-209ENST00000542717 UPF1Q92900 1129 aaKnown RBP eCLIP6□□□□□ -1.45
CHD4-209ENST00000542717 ZFYVE16Q7Z3T8 1539 aa5.99□□□□□ -1.45
CHD4-209ENST00000542717 DISP1Q96F81 1524 aa5.99□□□□□ -1.45
CHD4-209ENST00000542717 KIAA0556O60303 1618 aa5.99□□□□□ -1.45
CHD4-209ENST00000542717 BIVM-ERCC5R4GMW8 1640 aa5.99□□□□□ -1.45
CHD4-209ENST00000542717 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.99□□□□□ -1.45
CHD4-209ENST00000542717 HNRNPUL2Q1KMD3 747 aaKnown RBP5.99□□□□□ -1.45
CHD4-209ENST00000542717 FAM9AQ8IZU1 332 aaPredicted RBP5.99□□□□□ -1.45
CHD4-209ENST00000542717 SETD1AO15047 1707 aaKnown RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms