RNA–Protein interactions for RNA: ENST00000542698.1

PRKAB1-207, Transcript of protein kinase AMP-activated non-catalytic subunit beta 1, humanhuman

TSL 1 (best)

Gene PRKAB1, Length 4,019 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKAB1-207ENST00000542698 SMARCA2P51531 1590 aa11.26□□□□□ -0.61
PRKAB1-207ENST00000542698 FBLN2P98095 1184 aa11.23□□□□□ -0.61
PRKAB1-207ENST00000542698 ZNF777Q9ULD5 760 aaPredicted RBP11.23□□□□□ -0.61
PRKAB1-207ENST00000542698 AEBP2Q6ZN18 517 aaPredicted RBP11.23□□□□□ -0.61
PRKAB1-207ENST00000542698 EIF4G2P78344 907 aaKnown RBP eCLIP11.22□□□□□ -0.61
PRKAB1-207ENST00000542698 RRP7BPQ9NSQ0 103 aa11.22□□□□□ -0.61
PRKAB1-207ENST00000542698 TIMELESSQ9UNS1 1208 aa11.22□□□□□ -0.61
PRKAB1-207ENST00000542698 MRS2Q9HD23 443 aa11.21□□□□□ -0.61
PRKAB1-207ENST00000542698 IRX6P78412 446 aaPredicted RBP11.21□□□□□ -0.62
PRKAB1-207ENST00000542698 RAPGEF2Q9Y4G8 1499 aa11.19□□□□□ -0.62
PRKAB1-207ENST00000542698 CARMIL1Q5VZK9 1371 aa11.19□□□□□ -0.62
PRKAB1-207ENST00000542698 ANP32AP39687 249 aaKnown RBP11.18□□□□□ -0.62
PRKAB1-207ENST00000542698 ANP32EQ9BTT0 268 aa11.17□□□□□ -0.62
PRKAB1-207ENST00000542698 SETD5Q9C0A6 1442 aa11.16□□□□□ -0.62
PRKAB1-207ENST00000542698 FHAD1B1AJZ9 1412 aa11.16□□□□□ -0.62
PRKAB1-207ENST00000542698 HMGXB3Q12766 1538 aa11.16□□□□□ -0.62
PRKAB1-207ENST00000542698 DHX57Q6P158 1386 aaKnown RBP11.15□□□□□ -0.62
PRKAB1-207ENST00000542698 RAB3GAP2Q9H2M9 1393 aa11.15□□□□□ -0.62
PRKAB1-207ENST00000542698 TMC1Q8TDI8 760 aa11.15□□□□□ -0.62
PRKAB1-207ENST00000542698 PEG3Q9GZU2 1588 aa11.14□□□□□ -0.63
PRKAB1-207ENST00000542698 CCDC136Q96JN2 1154 aa11.14□□□□□ -0.63
PRKAB1-207ENST00000542698 SLC4A1APQ9BWU0 796 aaKnown RBP11.13□□□□□ -0.63
PRKAB1-207ENST00000542698 CCER2I3L3R5 266 aa11.13□□□□□ -0.63
PRKAB1-207ENST00000542698 ATAD2BQ9ULI0 1458 aa11.11□□□□□ -0.63
PRKAB1-207ENST00000542698 NCAPD3P42695 1498 aa11.1□□□□□ -0.63
PRKAB1-207ENST00000542698 PPP1R15AO75807 674 aaPredicted RBP11.1□□□□□ -0.63
PRKAB1-207ENST00000542698 SALL2Q9Y467 1007 aaPredicted RBP11.1□□□□□ -0.63
PRKAB1-207ENST00000542698 ERCC6Q03468 1493 aa11.1□□□□□ -0.63
PRKAB1-207ENST00000542698 NPM2Q86SE8 214 aaKnown RBP11.09□□□□□ -0.63
PRKAB1-207ENST00000542698 TSHZ2Q9NRE2 1034 aa11.07□□□□□ -0.64
PRKAB1-207ENST00000542698 KDM2AQ9Y2K7 1162 aa11.07□□□□□ -0.64
PRKAB1-207ENST00000542698 TSPY4P0CV99 314 aa11.07□□□□□ -0.64
PRKAB1-207ENST00000542698 TSPY10P0CW01 314 aa11.07□□□□□ -0.64
PRKAB1-207ENST00000542698 KCNH8Q96L42 1107 aa11.06□□□□□ -0.64
PRKAB1-207ENST00000542698 RBM19Q9Y4C8 960 aaKnown RBP11.05□□□□□ -0.64
PRKAB1-207ENST00000542698 PPP4R2Q9NY27 417 aa11.05□□□□□ -0.64
PRKAB1-207ENST00000542698 ZBTB47Q9UFB7 747 aaPredicted RBP11.05□□□□□ -0.64
PRKAB1-207ENST00000542698 ARHGAP35Q9NRY4 1499 aa11.03□□□□□ -0.64
PRKAB1-207ENST00000542698 NBR1Q14596 966 aa11.03□□□□□ -0.64
PRKAB1-207ENST00000542698 HSPA5P11021 654 aaKnown RBP11.01□□□□□ -0.65
PRKAB1-207ENST00000542698 CFDP1Q9UEE9 299 aaPredicted RBP11□□□□□ -0.65
PRKAB1-207ENST00000542698 SYNJ1O43426 1573 aa10.99□□□□□ -0.65
PRKAB1-207ENST00000542698 KIF21BO75037 1637 aa10.99□□□□□ -0.65
PRKAB1-207ENST00000542698 SENP3-EIF4A1A0A087X0R7 540 aa10.99□□□□□ -0.65
PRKAB1-207ENST00000542698 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.99□□□□□ -0.65
PRKAB1-207ENST00000542698 CANXP27824 592 aaKnown RBP10.99□□□□□ -0.65
PRKAB1-207ENST00000542698 B4GALNT3Q6L9W6 998 aa10.99□□□□□ -0.65
PRKAB1-207ENST00000542698 CHMP7Q8WUX9 453 aaPredicted RBP10.99□□□□□ -0.65
PRKAB1-207ENST00000542698 PLEKHD1A6NEE1 506 aa10.96□□□□□ -0.65
PRKAB1-207ENST00000542698 FMN1Q68DA7 1419 aa10.96□□□□□ -0.65
PRKAB1-207ENST00000542698 CADPSQ9ULU8 1353 aa10.96□□□□□ -0.66
PRKAB1-207ENST00000542698 CARD11Q9BXL7 1154 aa10.96□□□□□ -0.66
PRKAB1-207ENST00000542698 FHOD3Q2V2M9 1422 aa10.95□□□□□ -0.66
PRKAB1-207ENST00000542698 IGF1RP08069 1367 aa10.94□□□□□ -0.66
PRKAB1-207ENST00000542698 FOXD1Q16676 465 aa10.94□□□□□ -0.66
PRKAB1-207ENST00000542698 ERICH6BQ5W0A0 696 aa10.94□□□□□ -0.66
PRKAB1-207ENST00000542698 MPHOSPH9Q99550 1183 aa10.94□□□□□ -0.66
PRKAB1-207ENST00000542698 RGL3Q3MIN7 710 aa10.94□□□□□ -0.66
PRKAB1-207ENST00000542698 TDRD9Q8NDG6 1382 aaKnown RBP10.92□□□□□ -0.66
PRKAB1-207ENST00000542698 L3MBTL2Q969R5 705 aa10.92□□□□□ -0.66
PRKAB1-207ENST00000542698 WDR43Q15061 677 aaKnown RBP eCLIP10.92□□□□□ -0.66
PRKAB1-207ENST00000542698 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.92□□□□□ -0.66
PRKAB1-207ENST00000542698 LAMC3Q9Y6N6 1575 aa10.91□□□□□ -0.66
PRKAB1-207ENST00000542698 ARAP1Q96P48 1450 aa10.9□□□□□ -0.66
PRKAB1-207ENST00000542698 RRBP1Q9P2E9 1410 aaKnown RBP10.89□□□□□ -0.67
PRKAB1-207ENST00000542698 PDS5BQ9NTI5 1447 aa10.89□□□□□ -0.67
PRKAB1-207ENST00000542698 TOP2BQ02880 1626 aa10.88□□□□□ -0.67
PRKAB1-207ENST00000542698 PRXQ9BXM0 1461 aa10.88□□□□□ -0.67
PRKAB1-207ENST00000542698 PHLDB1Q86UU1 1377 aa10.87□□□□□ -0.67
PRKAB1-207ENST00000542698 NOP58Q9Y2X3 529 aaKnown RBP10.87□□□□□ -0.67
PRKAB1-207ENST00000542698 ERICH3Q5RHP9 1530 aa10.86□□□□□ -0.67
PRKAB1-207ENST00000542698 DCAF11Q8TEB1 546 aa10.86□□□□□ -0.67
PRKAB1-207ENST00000542698 CHGAP10645 457 aaKnown RBP10.85□□□□□ -0.67
PRKAB1-207ENST00000542698 PKD2Q13563 968 aa10.85□□□□□ -0.67
PRKAB1-207ENST00000542698 LRRC9Q6ZRR7 1453 aa10.84□□□□□ -0.67
PRKAB1-207ENST00000542698 UPF2Q9HAU5 1272 aaKnown RBP10.83□□□□□ -0.68
PRKAB1-207ENST00000542698 PRKRIP1Q9H875 184 aaPredicted RBP10.83□□□□□ -0.68
PRKAB1-207ENST00000542698 NEFMP07197 916 aa10.82□□□□□ -0.68
PRKAB1-207ENST00000542698 BCL11AQ9H165 835 aa10.82□□□□□ -0.68
PRKAB1-207ENST00000542698 KNSTRNQ9Y448 316 aa10.82□□□□□ -0.68
PRKAB1-207ENST00000542698 CCDC18Q5T9S5 1454 aa10.82□□□□□ -0.68
PRKAB1-207ENST00000542698 DDRGK1Q96HY6 314 aa10.81□□□□□ -0.68
PRKAB1-207ENST00000542698 BIVM-ERCC5R4GMW8 1640 aa10.81□□□□□ -0.68
PRKAB1-207ENST00000542698 FGD5Q6ZNL6 1462 aa10.8□□□□□ -0.68
PRKAB1-207ENST00000542698 CFTRP13569 1480 aa10.8□□□□□ -0.68
PRKAB1-207ENST00000542698 CDCA8Q53HL2 280 aa10.8□□□□□ -0.68
PRKAB1-207ENST00000542698 CC2D1BQ5T0F9 858 aaKnown RBP10.8□□□□□ -0.68
PRKAB1-207ENST00000542698 NUDCQ9Y266 331 aa10.79□□□□□ -0.68
PRKAB1-207ENST00000542698 FGD6Q6ZV73 1430 aa10.79□□□□□ -0.68
PRKAB1-207ENST00000542698 PRDM2Q13029 1718 aa10.79□□□□□ -0.68
PRKAB1-207ENST00000542698 CUX1P39880 1505 aa10.78□□□□□ -0.68
PRKAB1-207ENST00000542698 FANCD2Q9BXW9 1451 aa10.78□□□□□ -0.68
PRKAB1-207ENST00000542698 PPM1GO15355 546 aaPredicted RBP10.78□□□□□ -0.68
PRKAB1-207ENST00000542698 UACAQ9BZF9 1416 aa10.78□□□□□ -0.68
PRKAB1-207ENST00000542698 DEKP35659 375 aaKnown RBP10.77□□□□□ -0.69
PRKAB1-207ENST00000542698 NUP155O75694 1391 aa10.76□□□□□ -0.69
PRKAB1-207ENST00000542698 EIF5BO60841 1220 aaKnown RBP10.76□□□□□ -0.69
PRKAB1-207ENST00000542698 RALBP1Q15311 655 aa10.76□□□□□ -0.69
PRKAB1-207ENST00000542698 LAS1LQ9Y4W2 734 aaKnown RBP10.76□□□□□ -0.69
PRKAB1-207ENST00000542698 RCAN3Q9UKA8 241 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms