RNA–Protein interactions for RNA: ENST00000538492.5

RAB40C-204, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RAB40C, Length 2,569 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-204ENST00000538492 WDR97A6NE52 1622 aa36.84■■■■□ 3.49
RAB40C-204ENST00000538492 ATP1B4Q9UN42 357 aaPredicted RBP36.83■■■■□ 3.49
RAB40C-204ENST00000538492 FHOD3Q2V2M9 1422 aa36.83■■■■□ 3.49
RAB40C-204ENST00000538492 PCF11O94913 1555 aaKnown RBP36.83■■■■□ 3.49
RAB40C-204ENST00000538492 LRRC9Q6ZRR7 1453 aa36.83■■■■□ 3.49
RAB40C-204ENST00000538492 PDS5BQ9NTI5 1447 aa36.82■■■■□ 3.48
RAB40C-204ENST00000538492 TDRD9Q8NDG6 1382 aaKnown RBP36.81■■■■□ 3.48
RAB40C-204ENST00000538492 SCAF1Q9H7N4 1312 aaKnown RBP36.79■■■■□ 3.48
RAB40C-204ENST00000538492 CLSPNQ9HAW4 1339 aa36.78■■■■□ 3.48
RAB40C-204ENST00000538492 CTTNBP2Q8WZ74 1663 aa36.78■■■■□ 3.48
RAB40C-204ENST00000538492 KIF21AQ7Z4S6 1674 aa36.75■■■■□ 3.47
RAB40C-204ENST00000538492 CFAP43Q8NDM7 1665 aa36.72■■■■□ 3.47
RAB40C-204ENST00000538492 EFCAB5A4FU69 1503 aa36.72■■■■□ 3.47
RAB40C-204ENST00000538492 ABCA5Q8WWZ7 1642 aa36.71■■■■□ 3.47
RAB40C-204ENST00000538492 PHLDB1Q86UU1 1377 aa36.7■■■■□ 3.47
RAB40C-204ENST00000538492 GAPVD1Q14C86 1478 aa36.68■■■■□ 3.46
RAB40C-204ENST00000538492 FYCO1Q9BQS8 1478 aa36.63■■■■□ 3.45
RAB40C-204ENST00000538492 NEUROD1Q13562 356 aa36.62■■■■□ 3.45
RAB40C-204ENST00000538492 ACIN1Q9UKV3 1341 aaKnown RBP36.61■■■■□ 3.45
RAB40C-204ENST00000538492 CASKIN1Q8WXD9 1431 aa36.6■■■■□ 3.45
RAB40C-204ENST00000538492 FAM50AQ14320 339 aaKnown RBP36.58■■■■□ 3.45
RAB40C-204ENST00000538492 RAB3GAP2Q9H2M9 1393 aa36.57■■■■□ 3.44
RAB40C-204ENST00000538492 AQRO60306 1485 aaKnown RBP eCLIP36.54■■■■□ 3.442e-6■■■■■ 26.9
RAB40C-204ENST00000538492 FMN1Q68DA7 1419 aa36.51■■■■□ 3.44
RAB40C-204ENST00000538492 TARBP1Q13395 1621 aaKnown RBP36.5■■■■□ 3.43
RAB40C-204ENST00000538492 CENPBP07199 599 aaPredicted RBP36.49■■■■□ 3.43
RAB40C-204ENST00000538492 MIER1Q8N108 512 aa36.48■■■■□ 3.43
RAB40C-204ENST00000538492 SETD5Q9C0A6 1442 aa36.44■■■■□ 3.42
RAB40C-204ENST00000538492 SNAPC4Q5SXM2 1469 aa36.44■■■■□ 3.42
RAB40C-204ENST00000538492 SAMD9Q5K651 1589 aa36.43■■■■□ 3.42
RAB40C-204ENST00000538492 MAPKBP1O60336 1514 aa36.35■■■■□ 3.41
RAB40C-204ENST00000538492 YTHDC1Q96MU7 727 aaKnown RBP36.34■■■■□ 3.41
RAB40C-204ENST00000538492 PBRM1Q86U86 1689 aa36.32■■■■□ 3.4
RAB40C-204ENST00000538492 LRRIQ1Q96JM4 1722 aa36.31■■■■□ 3.4
RAB40C-204ENST00000538492 MTUS2Q5JR59 1369 aa36.31■■■■□ 3.4
RAB40C-204ENST00000538492 MRC2Q9UBG0 1479 aa36.28■■■■□ 3.4
RAB40C-204ENST00000538492 GRIN2BQ13224 1484 aa36.24■■■■□ 3.39
RAB40C-204ENST00000538492 FGD6Q6ZV73 1430 aa36.24■■■■□ 3.39
RAB40C-204ENST00000538492 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.21■■■■□ 3.391e-6■■■□□ 17.3
RAB40C-204ENST00000538492 GTF3C3Q9Y5Q9 886 aa36.2■■■■□ 3.38
RAB40C-204ENST00000538492 ADAMTS12P58397 1594 aa36.16■■■■□ 3.38
RAB40C-204ENST00000538492 THOC2Q8NI27 1593 aaKnown RBP36.13■■■■□ 3.37
RAB40C-204ENST00000538492 NCOA2Q15596 1464 aa36.12■■■■□ 3.37
RAB40C-204ENST00000538492 SIN3AQ96ST3 1273 aa36.12■■■■□ 3.37
RAB40C-204ENST00000538492 IQGAP2Q13576 1575 aa36.11■■■■□ 3.37
RAB40C-204ENST00000538492 ZNF608Q9ULD9 1512 aaPredicted RBP36.07■■■■□ 3.37
RAB40C-204ENST00000538492 SUPT6HQ7KZ85 1726 aaKnown RBP36.06■■■■□ 3.36
RAB40C-204ENST00000538492 EHBP1L1Q8N3D4 1523 aa36.04■■■■□ 3.36
RAB40C-204ENST00000538492 MYOM3Q5VTT5 1437 aa36.04■■■■□ 3.36
RAB40C-204ENST00000538492 PTPRKQ15262 1439 aa36.02■■■■□ 3.36
RAB40C-204ENST00000538492 MAGI3Q5TCQ9 1506 aa36.02■■■■□ 3.36
RAB40C-204ENST00000538492 IFT140Q96RY7 1462 aa36■■■■□ 3.35
RAB40C-204ENST00000538492 WDR62O43379 1518 aa35.98■■■■□ 3.35
RAB40C-204ENST00000538492 CCDC18Q5T9S5 1454 aa35.97■■■■□ 3.35
RAB40C-204ENST00000538492 HECW1Q76N89 1606 aa35.96■■■■□ 3.35
RAB40C-204ENST00000538492 UGGT2Q9NYU1 1516 aa35.94■■■■□ 3.34
RAB40C-204ENST00000538492 ARID3CA6NKF2 412 aa35.92■■■■□ 3.34
RAB40C-204ENST00000538492 HFM1A2PYH4 1435 aa35.91■■■■□ 3.34
RAB40C-204ENST00000538492 PTPN23Q9H3S7 1636 aa35.9■■■■□ 3.34
RAB40C-204ENST00000538492 EPRSP07814 1512 aaKnown RBP35.9■■■■□ 3.34
RAB40C-204ENST00000538492 ARHGEF11O15085 1522 aa35.88■■■■□ 3.33
RAB40C-204ENST00000538492 CDK13Q14004 1512 aaKnown RBP35.87■■■■□ 3.33
RAB40C-204ENST00000538492 NAIPQ13075 1403 aa35.82■■■■□ 3.33
RAB40C-204ENST00000538492 EIF4G3O43432 1585 aaKnown RBP35.81■■■■□ 3.32
RAB40C-204ENST00000538492 ERCC6Q03468 1493 aa35.81■■■■□ 3.32
RAB40C-204ENST00000538492 TIMELESSQ9UNS1 1208 aa35.79■■■■□ 3.32
RAB40C-204ENST00000538492 UACAQ9BZF9 1416 aa35.78■■■■□ 3.32
RAB40C-204ENST00000538492 KIAA0586Q9BVV6 1533 aa35.77■■■■□ 3.32
RAB40C-204ENST00000538492 CHIC2Q9UKJ5 165 aa35.74■■■■□ 3.31
RAB40C-204ENST00000538492 GRIN2AQ12879 1464 aa35.73■■■■□ 3.31
RAB40C-204ENST00000538492 DISP1Q96F81 1524 aa35.73■■■■□ 3.31
RAB40C-204ENST00000538492 KIAA0556O60303 1618 aa35.72■■■■□ 3.31
RAB40C-204ENST00000538492 PPP1R15AO75807 674 aaPredicted RBP35.72■■■■□ 3.31
RAB40C-204ENST00000538492 RRP7BPQ9NSQ0 103 aa35.72■■■■□ 3.31
RAB40C-204ENST00000538492 TCOF1Q13428 1488 aaKnown RBP35.71■■■■□ 3.31
RAB40C-204ENST00000538492 TONSLQ96HA7 1378 aa35.65■■■■□ 3.3
RAB40C-204ENST00000538492 HIRIP3Q9BW71 556 aaPredicted RBP35.62■■■■□ 3.29
RAB40C-204ENST00000538492 MIA2Q96PC5 1412 aa35.6■■■■□ 3.29
RAB40C-204ENST00000538492 CHMP7Q8WUX9 453 aaPredicted RBP35.6■■■■□ 3.29
RAB40C-204ENST00000538492 DDX10Q13206 875 aaKnown RBP35.58■■■■□ 3.29
RAB40C-204ENST00000538492 NUP153P49790 1475 aaKnown RBP35.58■■■■□ 3.29
RAB40C-204ENST00000538492 FBLN2P98095 1184 aa35.57■■■■□ 3.28
RAB40C-204ENST00000538492 GCC2Q8IWJ2 1684 aa35.56■■■■□ 3.28
RAB40C-204ENST00000538492 MAGI1Q96QZ7 1491 aaPredicted RBP35.56■■■■□ 3.28
RAB40C-204ENST00000538492 RAPGEF6Q8TEU7 1601 aa35.56■■■■□ 3.28
RAB40C-204ENST00000538492 CEP170Q5SW79 1584 aa35.52■■■■□ 3.28
RAB40C-204ENST00000538492 TRIM52Q96A61 297 aa35.52■■■■□ 3.28
RAB40C-204ENST00000538492 KDM6BO15054 1643 aa35.52■■■■□ 3.28
RAB40C-204ENST00000538492 SYNJ2O15056 1496 aa35.5■■■■□ 3.27
RAB40C-204ENST00000538492 AKNAQ7Z591 1439 aa35.47■■■■□ 3.27
RAB40C-204ENST00000538492 KCNH8Q96L42 1107 aa35.47■■■■□ 3.27
RAB40C-204ENST00000538492 CDK11AQ9UQ88 783 aaPredicted RBP35.44■■■■□ 3.26
RAB40C-204ENST00000538492 ZNF644Q9H582 1327 aaPredicted RBP35.42■■■■□ 3.26
RAB40C-204ENST00000538492 DENND4BO75064 1496 aaPredicted RBP35.42■■■■□ 3.26
RAB40C-204ENST00000538492 PELP1Q8IZL8 1130 aaKnown RBP35.41■■■■□ 3.26
RAB40C-204ENST00000538492 PLB1Q6P1J6 1458 aa35.4■■■■□ 3.26
RAB40C-204ENST00000538492 DAPK1P53355 1430 aa35.38■■■■□ 3.26
RAB40C-204ENST00000538492 PRG4Q92954 1404 aaPredicted RBP35.37■■■■□ 3.25
RAB40C-204ENST00000538492 KDM5BQ9UGL1 1544 aa35.35■■■■□ 3.25
RAB40C-204ENST00000538492 JPH4Q96JJ6 628 aa35.34■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms