RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ARID3CA6NKF2 412 aa14.25□□□□□ -0.13
CLIP1-209ENST00000537178 CDK11BP21127 795 aaKnown RBP14.25□□□□□ -0.13
CLIP1-209ENST00000537178 CHGAP10645 457 aaKnown RBP14.24□□□□□ -0.13
CLIP1-209ENST00000537178 PABPN1Q86U42 306 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLIP1-209ENST00000537178 FAM9BQ8IZU0 186 aa14.23□□□□□ -0.13
CLIP1-209ENST00000537178 CSRNP3Q8WYN3 585 aa14.22□□□□□ -0.13
CLIP1-209ENST00000537178 TMC1Q8TDI8 760 aa14.2□□□□□ -0.14
CLIP1-209ENST00000537178 SALL2Q9Y467 1007 aaPredicted RBP14.18□□□□□ -0.14
CLIP1-209ENST00000537178 DDX10Q13206 875 aaKnown RBP14.17□□□□□ -0.14
CLIP1-209ENST00000537178 NBR1Q14596 966 aa14.17□□□□□ -0.14
CLIP1-209ENST00000537178 WDR43Q15061 677 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLIP1-209ENST00000537178 ARXQ96QS3 562 aa14.16□□□□□ -0.14
CLIP1-209ENST00000537178 GOLGA3Q08378 1498 aa14.15□□□□□ -0.14
CLIP1-209ENST00000537178 MYH16Q9H6N6 1097 aa14.15□□□□□ -0.14
CLIP1-209ENST00000537178 ANP32EQ9BTT0 268 aa14.12□□□□□ -0.15
CLIP1-209ENST00000537178 BAZ1BQ9UIG0 1483 aaKnown RBP14.12□□□□□ -0.15
CLIP1-209ENST00000537178 BIVM-ERCC5R4GMW8 1640 aa14.11□□□□□ -0.15
CLIP1-209ENST00000537178 NCLP19338 710 aaKnown RBP14.1□□□□□ -0.15
CLIP1-209ENST00000537178 MRS2Q9HD23 443 aa14.09□□□□□ -0.15
CLIP1-209ENST00000537178 NPM1P06748 294 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLIP1-209ENST00000537178 CUX2O14529 1486 aa14.09□□□□□ -0.15
CLIP1-209ENST00000537178 CLIP1P30622 1438 aa14.08□□□□□ -0.15
CLIP1-209ENST00000537178 TRIM44Q96DX7 344 aaPredicted RBP14.08□□□□□ -0.16
CLIP1-209ENST00000537178 BECN1Q14457 450 aa14.08□□□□□ -0.16
CLIP1-209ENST00000537178 GOLGA6L22H0YM25 854 aa14.07□□□□□ -0.16
CLIP1-209ENST00000537178 TOP2BQ02880 1626 aa14.06□□□□□ -0.16
CLIP1-209ENST00000537178 VPS8Q8N3P4 1428 aa14.06□□□□□ -0.16
CLIP1-209ENST00000537178 CEP164Q9UPV0 1460 aa14.05□□□□□ -0.16
CLIP1-209ENST00000537178 DDRGK1Q96HY6 314 aa14.05□□□□□ -0.16
CLIP1-209ENST00000537178 TNNT2P45379 298 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-209ENST00000537178 PLPPR3Q6T4P5 718 aa14.01□□□□□ -0.17
CLIP1-209ENST00000537178 RAPGEF2Q9Y4G8 1499 aa14.01□□□□□ -0.17
CLIP1-209ENST00000537178 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14□□□□□ -0.172e-7■■□□□ 13.3
CLIP1-209ENST00000537178 TSPY4P0CV99 314 aa14□□□□□ -0.17
CLIP1-209ENST00000537178 TSPY10P0CW01 314 aa14□□□□□ -0.17
CLIP1-209ENST00000537178 ZRSR1Q15695 479 aaKnown RBP14□□□□□ -0.17
CLIP1-209ENST00000537178 ERICH3Q5RHP9 1530 aa13.99□□□□□ -0.17
CLIP1-209ENST00000537178 MIER1Q8N108 512 aa13.99□□□□□ -0.17
CLIP1-209ENST00000537178 ARAP1Q96P48 1450 aa13.98□□□□□ -0.17
CLIP1-209ENST00000537178 PRXQ9BXM0 1461 aa13.98□□□□□ -0.17
CLIP1-209ENST00000537178 CHIC2Q9UKJ5 165 aa13.96□□□□□ -0.17
CLIP1-209ENST00000537178 KDM2AQ9Y2K7 1162 aa13.96□□□□□ -0.17
CLIP1-209ENST00000537178 PTMAP06454 111 aaKnown RBP13.96□□□□□ -0.18
CLIP1-209ENST00000537178 A0A0G2JS52 829 aa13.95□□□□□ -0.18
CLIP1-209ENST00000537178 DHX57Q6P158 1386 aaKnown RBP13.94□□□□□ -0.18
CLIP1-209ENST00000537178 RRBP1Q9P2E9 1410 aaKnown RBP13.93□□□□□ -0.18
CLIP1-209ENST00000537178 ERICH6BQ5W0A0 696 aa13.93□□□□□ -0.18
CLIP1-209ENST00000537178 ATAD2BQ9ULI0 1458 aa13.93□□□□□ -0.18
CLIP1-209ENST00000537178 EIF4G2P78344 907 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLIP1-209ENST00000537178 IRX6P78412 446 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-209ENST00000537178 DNTTIP2Q5QJE6 756 aaKnown RBP13.9□□□□□ -0.18
CLIP1-209ENST00000537178 PPM1GO15355 546 aaPredicted RBP13.89□□□□□ -0.19
CLIP1-209ENST00000537178 CASC1Q6TDU7 716 aa13.89□□□□□ -0.19
CLIP1-209ENST00000537178 CFAP53Q96M91 514 aa13.88□□□□□ -0.19
CLIP1-209ENST00000537178 MAPKBP1O60336 1514 aa13.88□□□□□ -0.19
CLIP1-209ENST00000537178 C14orf37Q86TY3 774 aa13.85□□□□□ -0.19
CLIP1-209ENST00000537178 MTUS2Q5JR59 1369 aa13.85□□□□□ -0.19
CLIP1-209ENST00000537178 ZBTB7CA1YPR0 619 aa13.84□□□□□ -0.19
CLIP1-209ENST00000537178 PPP1R15AO75807 674 aaPredicted RBP13.84□□□□□ -0.19
CLIP1-209ENST00000537178 CDCA8Q53HL2 280 aa13.83□□□□□ -0.2
CLIP1-209ENST00000537178 PRDM2Q13029 1718 aa13.83□□□□□ -0.2
CLIP1-209ENST00000537178 NRDCO43847 1150 aa13.81□□□□□ -0.2
CLIP1-209ENST00000537178 FTSJ3Q8IY81 847 aaKnown RBP13.81□□□□□ -0.2
CLIP1-209ENST00000537178 CUX1P39880 1505 aa13.8□□□□□ -0.2
CLIP1-209ENST00000537178 GOLGA6L6A8MZA4 724 aa13.8□□□□□ -0.2
CLIP1-209ENST00000537178 MAP3K1Q13233 1512 aa13.78□□□□□ -0.2
CLIP1-209ENST00000537178 NAP1L5Q96NT1 182 aaPredicted RBP13.78□□□□□ -0.2
CLIP1-209ENST00000537178 HIRIP3Q9BW71 556 aaPredicted RBP13.78□□□□□ -0.2
CLIP1-209ENST00000537178 CHMP4BQ9H444 224 aaKnown RBP13.78□□□□□ -0.2
CLIP1-209ENST00000537178 KNSTRNQ9Y448 316 aa13.78□□□□□ -0.2
CLIP1-209ENST00000537178 PLEKHG5O94827 1062 aa13.76□□□□□ -0.21
CLIP1-209ENST00000537178 HAP1P54257 671 aaPredicted RBP13.76□□□□□ -0.21
CLIP1-209ENST00000537178 PLCB2Q00722 1185 aa13.76□□□□□ -0.21
CLIP1-209ENST00000537178 ARHGAP35Q9NRY4 1499 aa13.75□□□□□ -0.21
CLIP1-209ENST00000537178 MAPK8IP3Q9UPT6 1336 aa13.74□□□□□ -0.21
CLIP1-209ENST00000537178 NUDCQ9Y266 331 aa13.74□□□□□ -0.21
CLIP1-209ENST00000537178 TULP1O00294 542 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-209ENST00000537178 TPRNQ4KMQ1 711 aa13.74□□□□□ -0.21
CLIP1-209ENST00000537178 HMGXB3Q12766 1538 aa13.73□□□□□ -0.21
CLIP1-209ENST00000537178 FGD1P98174 961 aa13.73□□□□□ -0.21
CLIP1-209ENST00000537178 MS4A1P11836 297 aa13.73□□□□□ -0.21
CLIP1-209ENST00000537178 RRP7BPQ9NSQ0 103 aa13.72□□□□□ -0.21
CLIP1-209ENST00000537178 SUPT16HQ9Y5B9 1047 aaKnown RBP13.72□□□□□ -0.21
CLIP1-209ENST00000537178 CFAP43Q8NDM7 1665 aa13.72□□□□□ -0.21
CLIP1-209ENST00000537178 RGL3Q3MIN7 710 aa13.7□□□□□ -0.22
CLIP1-209ENST00000537178 KANK4Q5T7N3 995 aaPredicted RBP13.7□□□□□ -0.22
CLIP1-209ENST00000537178 PPP4R2Q9NY27 417 aa13.7□□□□□ -0.22
CLIP1-209ENST00000537178 HSP90AB1P08238 724 aaKnown RBP13.69□□□□□ -0.22
CLIP1-209ENST00000537178 CHMP7Q8WUX9 453 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-209ENST00000537178 RGS3P49796 1198 aa13.69□□□□□ -0.22
CLIP1-209ENST00000537178 CHAF1AQ13111 956 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-209ENST00000537178 GOLGA6L4A6NEF3 574 aa13.69□□□□□ -0.22
CLIP1-209ENST00000537178 KCNJ4P48050 445 aa13.68□□□□□ -0.22
CLIP1-209ENST00000537178 TIAM1Q13009 1591 aa13.68□□□□□ -0.22
CLIP1-209ENST00000537178 NEUROD2Q15784 382 aa13.68□□□□□ -0.22
CLIP1-209ENST00000537178 LAS1LQ9Y4W2 734 aaKnown RBP13.68□□□□□ -0.22
CLIP1-209ENST00000537178 KDM5BQ9UGL1 1544 aa13.68□□□□□ -0.22
CLIP1-209ENST00000537178 PLEKHD1A6NEE1 506 aa13.67□□□□□ -0.22
CLIP1-209ENST00000537178 OS9Q13438 667 aaPredicted RBP13.67□□□□□ -0.22
CLIP1-209ENST00000537178 NOP58Q9Y2X3 529 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms