RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CUL7Q14999 1698 aa19.38■□□□□ 0.69
LDLR-203ENST00000535915 FHAD1B1AJZ9 1412 aa19.37■□□□□ 0.69
LDLR-203ENST00000535915 ITGAEP38570 1179 aa19.37■□□□□ 0.69
LDLR-203ENST00000535915 LAMC3Q9Y6N6 1575 aa19.37■□□□□ 0.69
LDLR-203ENST00000535915 LRRC9Q6ZRR7 1453 aa19.35■□□□□ 0.69
LDLR-203ENST00000535915 P3H3Q8IVL6 736 aa19.35■□□□□ 0.69
LDLR-203ENST00000535915 CTTNBP2Q8WZ74 1663 aa19.35■□□□□ 0.69
LDLR-203ENST00000535915 PCF11O94913 1555 aaKnown RBP19.35■□□□□ 0.69
LDLR-203ENST00000535915 CFAP43Q8NDM7 1665 aa19.34■□□□□ 0.69
LDLR-203ENST00000535915 WDR97A6NE52 1622 aa19.32■□□□□ 0.68
LDLR-203ENST00000535915 URB2Q14146 1524 aaKnown RBP19.31■□□□□ 0.68
LDLR-203ENST00000535915 ATP1B4Q9UN42 357 aaPredicted RBP19.3■□□□□ 0.68
LDLR-203ENST00000535915 EFCAB5A4FU69 1503 aa19.3■□□□□ 0.68
LDLR-203ENST00000535915 FHOD3Q2V2M9 1422 aa19.29■□□□□ 0.68
LDLR-203ENST00000535915 MIER1Q8N108 512 aa19.29■□□□□ 0.68
LDLR-203ENST00000535915 PHLDB1Q86UU1 1377 aa19.26■□□□□ 0.67
LDLR-203ENST00000535915 RAB3GAP2Q9H2M9 1393 aa19.25■□□□□ 0.67
LDLR-203ENST00000535915 FYCO1Q9BQS8 1478 aa19.25■□□□□ 0.67
LDLR-203ENST00000535915 YTHDC1Q96MU7 727 aaKnown RBP19.23■□□□□ 0.67
LDLR-203ENST00000535915 GTF3C3Q9Y5Q9 886 aa19.23■□□□□ 0.67
LDLR-203ENST00000535915 ABCA5Q8WWZ7 1642 aa19.23■□□□□ 0.67
LDLR-203ENST00000535915 PDS5BQ9NTI5 1447 aa19.22■□□□□ 0.67
LDLR-203ENST00000535915 KIF21AQ7Z4S6 1674 aa19.22■□□□□ 0.67
LDLR-203ENST00000535915 FAM50AQ14320 339 aaKnown RBP19.21■□□□□ 0.67
LDLR-203ENST00000535915 CASKIN1Q8WXD9 1431 aa19.21■□□□□ 0.67
LDLR-203ENST00000535915 TDRD9Q8NDG6 1382 aaKnown RBP19.21■□□□□ 0.67
LDLR-203ENST00000535915 AQRO60306 1485 aaKnown RBP eCLIP19.2■□□□□ 0.662e-7■■■■■ 26.9
LDLR-203ENST00000535915 SETD5Q9C0A6 1442 aa19.19■□□□□ 0.66
LDLR-203ENST00000535915 GAPVD1Q14C86 1478 aa19.18■□□□□ 0.66
LDLR-203ENST00000535915 FMN1Q68DA7 1419 aa19.17■□□□□ 0.66
LDLR-203ENST00000535915 DNAJC5BQ9UF47 199 aa19.16■□□□□ 0.66
LDLR-203ENST00000535915 MAPKBP1O60336 1514 aa19.15■□□□□ 0.66
LDLR-203ENST00000535915 SAMD9Q5K651 1589 aa19.13■□□□□ 0.65
LDLR-203ENST00000535915 SNAPC4Q5SXM2 1469 aa19.12■□□□□ 0.65
LDLR-203ENST00000535915 LRRIQ1Q96JM4 1722 aa19.09■□□□□ 0.65
LDLR-203ENST00000535915 TARBP1Q13395 1621 aaKnown RBP19.09■□□□□ 0.65
LDLR-203ENST00000535915 MTUS2Q5JR59 1369 aa19.06■□□□□ 0.64
LDLR-203ENST00000535915 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.06■□□□□ 0.64
LDLR-203ENST00000535915 PBRM1Q86U86 1689 aa19.05■□□□□ 0.64
LDLR-203ENST00000535915 FGD6Q6ZV73 1430 aa19.03■□□□□ 0.64
LDLR-203ENST00000535915 GRIN2BQ13224 1484 aa19.01■□□□□ 0.63
LDLR-203ENST00000535915 THOC2Q8NI27 1593 aaKnown RBP19■□□□□ 0.63
LDLR-203ENST00000535915 SIN3AQ96ST3 1273 aa18.99■□□□□ 0.63
LDLR-203ENST00000535915 SUPT6HQ7KZ85 1726 aaKnown RBP18.98■□□□□ 0.63
LDLR-203ENST00000535915 NCOA2Q15596 1464 aa18.96■□□□□ 0.63
LDLR-203ENST00000535915 EHBP1L1Q8N3D4 1523 aa18.95■□□□□ 0.62
LDLR-203ENST00000535915 MYOM3Q5VTT5 1437 aa18.93■□□□□ 0.62
LDLR-203ENST00000535915 MRC2Q9UBG0 1479 aa18.93■□□□□ 0.62
LDLR-203ENST00000535915 ADAMTS12P58397 1594 aa18.93■□□□□ 0.62
LDLR-203ENST00000535915 IQGAP2Q13576 1575 aa18.92■□□□□ 0.62
LDLR-203ENST00000535915 CCDC18Q5T9S5 1454 aa18.91■□□□□ 0.62
LDLR-203ENST00000535915 PTPRKQ15262 1439 aa18.9■□□□□ 0.62
LDLR-203ENST00000535915 TIMELESSQ9UNS1 1208 aa18.9■□□□□ 0.62
LDLR-203ENST00000535915 PTPN23Q9H3S7 1636 aa18.89■□□□□ 0.62
LDLR-203ENST00000535915 HECW1Q76N89 1606 aa18.89■□□□□ 0.61
LDLR-203ENST00000535915 HFM1A2PYH4 1435 aa18.89■□□□□ 0.61
LDLR-203ENST00000535915 UGGT2Q9NYU1 1516 aa18.88■□□□□ 0.61
LDLR-203ENST00000535915 MAGI3Q5TCQ9 1506 aa18.88■□□□□ 0.61
LDLR-203ENST00000535915 ARHGEF11O15085 1522 aa18.85■□□□□ 0.61
LDLR-203ENST00000535915 UACAQ9BZF9 1416 aa18.84■□□□□ 0.61
LDLR-203ENST00000535915 NAIPQ13075 1403 aa18.83■□□□□ 0.6
LDLR-203ENST00000535915 EPRSP07814 1512 aaKnown RBP18.82■□□□□ 0.6
LDLR-203ENST00000535915 PPP1R15AO75807 674 aaPredicted RBP18.81■□□□□ 0.6
LDLR-203ENST00000535915 IFT140Q96RY7 1462 aa18.81■□□□□ 0.6
LDLR-203ENST00000535915 ZNF608Q9ULD9 1512 aaPredicted RBP18.8■□□□□ 0.6
LDLR-203ENST00000535915 TONSLQ96HA7 1378 aa18.79■□□□□ 0.6
LDLR-203ENST00000535915 CDK13Q14004 1512 aaKnown RBP18.79■□□□□ 0.6
LDLR-203ENST00000535915 WDR62O43379 1518 aa18.78■□□□□ 0.6
LDLR-203ENST00000535915 DDX10Q13206 875 aaKnown RBP18.77■□□□□ 0.6
LDLR-203ENST00000535915 TCOF1Q13428 1488 aaKnown RBP18.77■□□□□ 0.59
LDLR-203ENST00000535915 GCC2Q8IWJ2 1684 aa18.76■□□□□ 0.59
LDLR-203ENST00000535915 ARID3CA6NKF2 412 aa18.75■□□□□ 0.59
LDLR-203ENST00000535915 RRP7BPQ9NSQ0 103 aa18.74■□□□□ 0.59
LDLR-203ENST00000535915 CHIC2Q9UKJ5 165 aa18.74■□□□□ 0.59
LDLR-203ENST00000535915 HIRIP3Q9BW71 556 aaPredicted RBP18.73■□□□□ 0.59
LDLR-203ENST00000535915 KIAA0556O60303 1618 aa18.72■□□□□ 0.59
LDLR-203ENST00000535915 EIF4G3O43432 1585 aaKnown RBP18.72■□□□□ 0.59
LDLR-203ENST00000535915 KIAA0586Q9BVV6 1533 aa18.71■□□□□ 0.59
LDLR-203ENST00000535915 KCNH8Q96L42 1107 aa18.7■□□□□ 0.58
LDLR-203ENST00000535915 MIA2Q96PC5 1412 aa18.7■□□□□ 0.58
LDLR-203ENST00000535915 DISP1Q96F81 1524 aa18.68■□□□□ 0.58
LDLR-203ENST00000535915 GRIN2AQ12879 1464 aa18.68■□□□□ 0.58
LDLR-203ENST00000535915 AKNAQ7Z591 1439 aa18.66■□□□□ 0.58
LDLR-203ENST00000535915 KDM6BO15054 1643 aa18.66■□□□□ 0.58
LDLR-203ENST00000535915 RAPGEF6Q8TEU7 1601 aa18.66■□□□□ 0.58
LDLR-203ENST00000535915 TRIM52Q96A61 297 aa18.65■□□□□ 0.58
LDLR-203ENST00000535915 ERCC6Q03468 1493 aa18.65■□□□□ 0.58
LDLR-203ENST00000535915 NUP153P49790 1475 aaKnown RBP18.63■□□□□ 0.57
LDLR-203ENST00000535915 KDM5BQ9UGL1 1544 aa18.61■□□□□ 0.57
LDLR-203ENST00000535915 DENND4BO75064 1496 aaPredicted RBP18.6■□□□□ 0.57
LDLR-203ENST00000535915 MAGI1Q96QZ7 1491 aaPredicted RBP18.59■□□□□ 0.57
LDLR-203ENST00000535915 ANP32CO43423 234 aa18.58■□□□□ 0.56
LDLR-203ENST00000535915 CDK11AQ9UQ88 783 aaPredicted RBP18.58■□□□□ 0.56
LDLR-203ENST00000535915 DNMT1P26358 1616 aaKnown RBP18.58■□□□□ 0.56
LDLR-203ENST00000535915 DAPK1P53355 1430 aa18.58■□□□□ 0.56
LDLR-203ENST00000535915 SUPT16HQ9Y5B9 1047 aaKnown RBP18.58■□□□□ 0.56
LDLR-203ENST00000535915 CHMP7Q8WUX9 453 aaPredicted RBP18.57■□□□□ 0.56
LDLR-203ENST00000535915 CEP170Q5SW79 1584 aa18.57■□□□□ 0.56
LDLR-203ENST00000535915 MPHOSPH9Q99550 1183 aa18.57■□□□□ 0.56
LDLR-203ENST00000535915 SYNJ2O15056 1496 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms