RNA–Protein interactions for RNA: ENST00000533820.5

CAPN1-226, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-226ENST00000533820 HIRIP3Q9BW71 556 aaPredicted RBP27.79■■■□□ 2.04
CAPN1-226ENST00000533820 CARMIL1Q5VZK9 1371 aa27.79■■■□□ 2.04
CAPN1-226ENST00000533820 DDX10Q13206 875 aaKnown RBP27.74■■■□□ 2.03
CAPN1-226ENST00000533820 PHLDB1Q86UU1 1377 aa27.72■■■□□ 2.03
CAPN1-226ENST00000533820 FGD5Q6ZNL6 1462 aa27.67■■■□□ 2.02
CAPN1-226ENST00000533820 SETD5Q9C0A6 1442 aa27.66■■■□□ 2.02
CAPN1-226ENST00000533820 BCANQ96GW7 911 aa27.65■■■□□ 2.02
CAPN1-226ENST00000533820 MAPKBP1O60336 1514 aa27.65■■■□□ 2.02
CAPN1-226ENST00000533820 TIAM1Q13009 1591 aa27.65■■■□□ 2.02
CAPN1-226ENST00000533820 CADPSQ9ULU8 1353 aa27.64■■■□□ 2.02
CAPN1-226ENST00000533820 LRRC9Q6ZRR7 1453 aa27.62■■■□□ 2.01
CAPN1-226ENST00000533820 FHOD3Q2V2M9 1422 aa27.58■■■□□ 2.01
CAPN1-226ENST00000533820 WDR97A6NE52 1622 aa27.55■■■□□ 2
CAPN1-226ENST00000533820 RAD54L2Q9Y4B4 1467 aa27.51■■□□□ 1.99
CAPN1-226ENST00000533820 FHAD1B1AJZ9 1412 aa27.48■■□□□ 1.99
CAPN1-226ENST00000533820 PCF11O94913 1555 aaKnown RBP27.47■■□□□ 1.99
CAPN1-226ENST00000533820 TRIM52Q96A61 297 aa27.44■■□□□ 1.98
CAPN1-226ENST00000533820 FKBP8Q14318 412 aa27.43■■□□□ 1.98
CAPN1-226ENST00000533820 ERICH6Q7L0X2 663 aa27.42■■□□□ 1.98
CAPN1-226ENST00000533820 TSHZ2Q9NRE2 1034 aa27.42■■□□□ 1.98
CAPN1-226ENST00000533820 FANCD2Q9BXW9 1451 aa27.41■■□□□ 1.98
CAPN1-226ENST00000533820 MAP3K1Q13233 1512 aa27.4■■□□□ 1.98
CAPN1-226ENST00000533820 PPP1R15AO75807 674 aaPredicted RBP27.37■■□□□ 1.97
CAPN1-226ENST00000533820 PRDM2Q13029 1718 aa27.36■■□□□ 1.97
CAPN1-226ENST00000533820 NESP48681 1621 aa27.32■■□□□ 1.96
CAPN1-226ENST00000533820 ANP32CO43423 234 aa27.3■■□□□ 1.96
CAPN1-226ENST00000533820 MTUS2Q5JR59 1369 aa27.29■■□□□ 1.96
CAPN1-226ENST00000533820 TONSLQ96HA7 1378 aa27.29■■□□□ 1.96
CAPN1-226ENST00000533820 POLA1P09884 1462 aaPredicted RBP27.26■■□□□ 1.96
CAPN1-226ENST00000533820 CFAP43Q8NDM7 1665 aa27.26■■□□□ 1.95
CAPN1-226ENST00000533820 CC2D2AQ9P2K1 1620 aa27.25■■□□□ 1.95
CAPN1-226ENST00000533820 TDRD9Q8NDG6 1382 aaKnown RBP27.24■■□□□ 1.95
CAPN1-226ENST00000533820 CASKIN1Q8WXD9 1431 aa27.23■■□□□ 1.95
CAPN1-226ENST00000533820 CHIC2Q9UKJ5 165 aa27.23■■□□□ 1.95
CAPN1-226ENST00000533820 ARID3CA6NKF2 412 aa27.22■■□□□ 1.95
CAPN1-226ENST00000533820 FYCO1Q9BQS8 1478 aa27.22■■□□□ 1.95
CAPN1-226ENST00000533820 FGD6Q6ZV73 1430 aa27.21■■□□□ 1.95
CAPN1-226ENST00000533820 TOPBP1Q92547 1522 aa27.21■■□□□ 1.95
CAPN1-226ENST00000533820 PTPRKQ15262 1439 aa27.19■■□□□ 1.94
CAPN1-226ENST00000533820 NEFLP07196 543 aa27.19■■□□□ 1.94
CAPN1-226ENST00000533820 TIMELESSQ9UNS1 1208 aa27.19■■□□□ 1.94
CAPN1-226ENST00000533820 RRP7BPQ9NSQ0 103 aa27.19■■□□□ 1.94
CAPN1-226ENST00000533820 CCDC18Q5T9S5 1454 aa27.17■■□□□ 1.94
CAPN1-226ENST00000533820 ABCA10Q8WWZ4 1543 aa27.16■■□□□ 1.94
CAPN1-226ENST00000533820 DNMBPQ6XZF7 1577 aa27.14■■□□□ 1.94
CAPN1-226ENST00000533820 FMN1Q68DA7 1419 aa27.13■■□□□ 1.93
CAPN1-226ENST00000533820 EFCAB5A4FU69 1503 aa27.09■■□□□ 1.93
CAPN1-226ENST00000533820 CCER2I3L3R5 266 aa27.08■■□□□ 1.92
CAPN1-226ENST00000533820 IRX6P78412 446 aaPredicted RBP27.05■■□□□ 1.92
CAPN1-226ENST00000533820 AQRO60306 1485 aaKnown RBP eCLIP27.05■■□□□ 1.928e-7■■■■□ 24.7
CAPN1-226ENST00000533820 SNAPC4Q5SXM2 1469 aa27.04■■□□□ 1.92
CAPN1-226ENST00000533820 DNAJC5BQ9UF47 199 aa27.03■■□□□ 1.92
CAPN1-226ENST00000533820 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.03■■□□□ 1.92
CAPN1-226ENST00000533820 NCOA2Q15596 1464 aa27.03■■□□□ 1.92
CAPN1-226ENST00000533820 UACAQ9BZF9 1416 aa27.03■■□□□ 1.92
CAPN1-226ENST00000533820 HNRNPUQ00839 825 aaKnown RBP eCLIP27.02■■□□□ 1.92
CAPN1-226ENST00000533820 HFM1A2PYH4 1435 aa27.02■■□□□ 1.92
CAPN1-226ENST00000533820 FOXD1Q16676 465 aa27.01■■□□□ 1.91
CAPN1-226ENST00000533820 NAIPQ13075 1403 aa27.01■■□□□ 1.91
CAPN1-226ENST00000533820 CTTNBP2Q8WZ74 1663 aa27■■□□□ 1.91
CAPN1-226ENST00000533820 MYOM3Q5VTT5 1437 aa26.98■■□□□ 1.91
CAPN1-226ENST00000533820 URB2Q14146 1524 aaKnown RBP26.97■■□□□ 1.91
CAPN1-226ENST00000533820 CUL7Q14999 1698 aa26.97■■□□□ 1.91
CAPN1-226ENST00000533820 PTPN23Q9H3S7 1636 aa26.97■■□□□ 1.91
CAPN1-226ENST00000533820 ANO8Q9HCE9 1232 aaPredicted RBP26.96■■□□□ 1.91
CAPN1-226ENST00000533820 HSPA5P11021 654 aaKnown RBP26.95■■□□□ 1.9
CAPN1-226ENST00000533820 GAPVD1Q14C86 1478 aa26.93■■□□□ 1.9
CAPN1-226ENST00000533820 RBM19Q9Y4C8 960 aaKnown RBP26.9■■□□□ 1.9
CAPN1-226ENST00000533820 LRRIQ1Q96JM4 1722 aa26.9■■□□□ 1.9
CAPN1-226ENST00000533820 CNGB1Q14028 1251 aaPredicted RBP26.89■■□□□ 1.9
CAPN1-226ENST00000533820 WASHC2AQ641Q2 1341 aa26.88■■□□□ 1.89
CAPN1-226ENST00000533820 GRIN2BQ13224 1484 aa26.87■■□□□ 1.89
CAPN1-226ENST00000533820 CCDC184Q52MB2 194 aa26.85■■□□□ 1.89
CAPN1-226ENST00000533820 MAGI3Q5TCQ9 1506 aa26.83■■□□□ 1.89
CAPN1-226ENST00000533820 L3MBTL2Q969R5 705 aa26.82■■□□□ 1.88
CAPN1-226ENST00000533820 EIF4G2P78344 907 aaKnown RBP eCLIP26.81■■□□□ 1.88
CAPN1-226ENST00000533820 MPHOSPH9Q99550 1183 aa26.81■■□□□ 1.88
CAPN1-226ENST00000533820 SUPT6HQ7KZ85 1726 aaKnown RBP26.8■■□□□ 1.88
CAPN1-226ENST00000533820 SAMD9Q5K651 1589 aa26.79■■□□□ 1.88
CAPN1-226ENST00000533820 FAM9BQ8IZU0 186 aa26.79■■□□□ 1.88
CAPN1-226ENST00000533820 C11orf95C9JLR9 678 aaPredicted RBP26.78■■□□□ 1.88
CAPN1-226ENST00000533820 KDM5BQ9UGL1 1544 aa26.76■■□□□ 1.87
CAPN1-226ENST00000533820 EHBP1L1Q8N3D4 1523 aa26.76■■□□□ 1.87
CAPN1-226ENST00000533820 KDM6BO15054 1643 aa26.74■■□□□ 1.87
CAPN1-226ENST00000533820 CDK13Q14004 1512 aaKnown RBP26.73■■□□□ 1.87
CAPN1-226ENST00000533820 ABCA5Q8WWZ7 1642 aa26.73■■□□□ 1.87
CAPN1-226ENST00000533820 UGGT2Q9NYU1 1516 aa26.73■■□□□ 1.87
CAPN1-226ENST00000533820 DENND4BO75064 1496 aaPredicted RBP26.71■■□□□ 1.87
CAPN1-226ENST00000533820 ZNF644Q9H582 1327 aaPredicted RBP26.71■■□□□ 1.87
CAPN1-226ENST00000533820 POLR3GLQ9BT43 218 aa26.71■■□□□ 1.87
CAPN1-226ENST00000533820 PDS5BQ9NTI5 1447 aa26.69■■□□□ 1.86
CAPN1-226ENST00000533820 SENP3-EIF4A1A0A087X0R7 540 aa26.68■■□□□ 1.86
CAPN1-226ENST00000533820 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
CAPN1-226ENST00000533820 NBPF8Q3BBV2 869 aa26.67■■□□□ 1.86
CAPN1-226ENST00000533820 MRS2Q9HD23 443 aa26.67■■□□□ 1.86
CAPN1-226ENST00000533820 ZNF326Q5BKZ1 582 aaKnown RBP26.65■■□□□ 1.86
CAPN1-226ENST00000533820 EPRSP07814 1512 aaKnown RBP26.64■■□□□ 1.85
CAPN1-226ENST00000533820 SLC4A1APQ9BWU0 796 aaKnown RBP26.64■■□□□ 1.85
CAPN1-226ENST00000533820 PRKRIP1Q9H875 184 aaPredicted RBP26.6■■□□□ 1.85
CAPN1-226ENST00000533820 THOC2Q8NI27 1593 aaKnown RBP26.59■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 152.6 ms