RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 POTEGQ6S5H5 508 aa7.41□□□□□ -1.22
SKP1-209ENST00000522552 C14orf37Q86TY3 774 aa7.41□□□□□ -1.22
SKP1-209ENST00000522552 TSHZ2Q9NRE2 1034 aa7.41□□□□□ -1.22
SKP1-209ENST00000522552 NBR1Q14596 966 aa7.41□□□□□ -1.22
SKP1-209ENST00000522552 CLEC11AQ9Y240 323 aa7.39□□□□□ -1.23
SKP1-209ENST00000522552 PITPNM1O00562 1244 aa7.38□□□□□ -1.23
SKP1-209ENST00000522552 RANGAP1P46060 587 aaPredicted RBP7.38□□□□□ -1.23
SKP1-209ENST00000522552 PIP4P2Q8N4L2 257 aa7.35□□□□□ -1.23
SKP1-209ENST00000522552 SPRYD3Q8NCJ5 442 aa7.35□□□□□ -1.23
SKP1-209ENST00000522552 SPDYE1Q8NFV5 336 aaPredicted RBP7.35□□□□□ -1.23
SKP1-209ENST00000522552 PODXL2Q9NZ53 605 aa7.34□□□□□ -1.23
SKP1-209ENST00000522552 PROM2Q8N271 834 aa7.32□□□□□ -1.24
SKP1-209ENST00000522552 DNAJC5Q9H3Z4 198 aa7.32□□□□□ -1.24
SKP1-209ENST00000522552 ECM2O94769 699 aaPredicted RBP7.28□□□□□ -1.24
SKP1-209ENST00000522552 EVX2Q03828 476 aa7.28□□□□□ -1.24
SKP1-209ENST00000522552 PRR29P0C7W0 189 aa7.28□□□□□ -1.24
SKP1-209ENST00000522552 STAG3Q9UJ98 1225 aa7.25□□□□□ -1.25
SKP1-209ENST00000522552 SUPT5HO00267 1087 aaKnown RBP7.23□□□□□ -1.25
SKP1-209ENST00000522552 CHADLQ6NUI6 762 aa7.22□□□□□ -1.25
SKP1-209ENST00000522552 RGL2O15211 777 aa7.22□□□□□ -1.25
SKP1-209ENST00000522552 FXR2P51116 673 aaKnown RBP eCLIP7.21□□□□□ -1.26
SKP1-209ENST00000522552 PRKAR2AP13861 404 aaKnown RBP7.2□□□□□ -1.26
SKP1-209ENST00000522552 GABBR2O75899 941 aa7.17□□□□□ -1.26
SKP1-209ENST00000522552 SPOCK2Q92563 424 aa7.17□□□□□ -1.26
SKP1-209ENST00000522552 MIER1Q8N108 512 aa7.16□□□□□ -1.26
SKP1-209ENST00000522552 CREBZFQ9NS37 354 aa7.16□□□□□ -1.26
SKP1-209ENST00000522552 CHGAP10645 457 aaKnown RBP7.15□□□□□ -1.27
SKP1-209ENST00000522552 KLHL34Q8N239 644 aa7.14□□□□□ -1.27
SKP1-209ENST00000522552 PLCD3Q8N3E9 789 aa7.14□□□□□ -1.27
SKP1-209ENST00000522552 NPM2Q86SE8 214 aaKnown RBP7.13□□□□□ -1.27
SKP1-209ENST00000522552 UBTFP17480 764 aaKnown RBP7.12□□□□□ -1.27
SKP1-209ENST00000522552 TRIM26Q12899 539 aaPredicted RBP7.12□□□□□ -1.27
SKP1-209ENST00000522552 FARP1Q9Y4F1 1045 aaPredicted RBP7.09□□□□□ -1.27
SKP1-209ENST00000522552 PLEKHG5O94827 1062 aa7.09□□□□□ -1.27
SKP1-209ENST00000522552 MNX1P50219 401 aaPredicted RBP7.06□□□□□ -1.28
SKP1-209ENST00000522552 BRPF1P55201 1214 aaPredicted RBP7.06□□□□□ -1.28
SKP1-209ENST00000522552 HRCP23327 699 aa7.04□□□□□ -1.28
SKP1-209ENST00000522552 HS6ST3Q8IZP7 471 aa7.02□□□□□ -1.29
SKP1-209ENST00000522552 ZBTB47Q9UFB7 747 aaPredicted RBP7□□□□□ -1.29
SKP1-209ENST00000522552 CD44P16070 742 aaKnown RBP6.99□□□□□ -1.29
SKP1-209ENST00000522552 C19orf67A6NJJ6 358 aa6.97□□□□□ -1.29
SKP1-209ENST00000522552 OTUD5Q96G74 571 aa6.97□□□□□ -1.29
SKP1-209ENST00000522552 TSPYL2Q9H2G4 693 aaPredicted RBP6.97□□□□□ -1.29
SKP1-209ENST00000522552 LMOD2Q6P5Q4 547 aa6.96□□□□□ -1.29
SKP1-209ENST00000522552 RASEFQ8IZ41 740 aa6.96□□□□□ -1.29
SKP1-209ENST00000522552 NKX1-1Q15270 411 aaPredicted RBP6.96□□□□□ -1.3
SKP1-209ENST00000522552 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.96□□□□□ -1.3
SKP1-209ENST00000522552 ZRANB1Q9UGI0 708 aa6.95□□□□□ -1.3
SKP1-209ENST00000522552 NUBP1P53384 320 aa6.94□□□□□ -1.3
SKP1-209ENST00000522552 NEUROD2Q15784 382 aa6.94□□□□□ -1.3
SKP1-209ENST00000522552 CIZ1Q9ULV3 898 aaPredicted RBP6.94□□□□□ -1.3
SKP1-209ENST00000522552 GTPBP6O43824 516 aaPredicted RBP6.93□□□□□ -1.3
SKP1-209ENST00000522552 PAK3O75914 559 aaPredicted RBP6.93□□□□□ -1.3
SKP1-209ENST00000522552 POTEIP0CG38 1075 aa6.92□□□□□ -1.3
SKP1-209ENST00000522552 DCAF8Q5TAQ9 597 aa6.91□□□□□ -1.3
SKP1-209ENST00000522552 P3H3Q8IVL6 736 aa6.9□□□□□ -1.3
SKP1-209ENST00000522552 FAM212AQ96EL1 285 aa6.9□□□□□ -1.3
SKP1-209ENST00000522552 PHF12Q96QT6 1004 aa6.9□□□□□ -1.31
SKP1-209ENST00000522552 ZMYND15Q9H091 742 aa6.89□□□□□ -1.31
SKP1-209ENST00000522552 RNF25Q96BH1 459 aaPredicted RBP6.87□□□□□ -1.31
SKP1-209ENST00000522552 RSPH6AQ9H0K4 717 aa6.87□□□□□ -1.31
SKP1-209ENST00000522552 TRIM41Q8WV44 630 aa6.87□□□□□ -1.31
SKP1-209ENST00000522552 CCDC61Q9Y6R9 512 aa6.87□□□□□ -1.31
SKP1-209ENST00000522552 ARID3AQ99856 593 aa6.86□□□□□ -1.31
SKP1-209ENST00000522552 PYGBP11216 843 aa6.85□□□□□ -1.31
SKP1-209ENST00000522552 ZNF579Q8NAF0 562 aaKnown RBP6.85□□□□□ -1.31
SKP1-209ENST00000522552 KCNV2Q8TDN2 545 aa6.84□□□□□ -1.31
SKP1-209ENST00000522552 ZC3H15Q8WU90 426 aaKnown RBP6.84□□□□□ -1.31
SKP1-209ENST00000522552 SLC24A3Q9HC58 644 aa6.84□□□□□ -1.31
SKP1-209ENST00000522552 GSE1Q14687 1217 aa6.84□□□□□ -1.32
SKP1-209ENST00000522552 CCDC9Q9Y3X0 531 aaKnown RBP6.83□□□□□ -1.32
SKP1-209ENST00000522552 MAP3K13O43283 966 aa6.81□□□□□ -1.32
SKP1-209ENST00000522552 C1orf115Q9H7X2 142 aa6.81□□□□□ -1.32
SKP1-209ENST00000522552 GALR2O43603 387 aaPredicted RBP6.81□□□□□ -1.32
SKP1-209ENST00000522552 CDAN1Q8IWY9 1227 aa6.81□□□□□ -1.32
SKP1-209ENST00000522552 KIF12Q96FN5 646 aa6.81□□□□□ -1.32
SKP1-209ENST00000522552 MMRN1Q13201 1228 aa6.8□□□□□ -1.32
SKP1-209ENST00000522552 ZBTB7CA1YPR0 619 aa6.79□□□□□ -1.32
SKP1-209ENST00000522552 MS4A3Q96HJ5 214 aa6.79□□□□□ -1.32
SKP1-209ENST00000522552 PCDHB13Q9Y5F0 798 aa6.78□□□□□ -1.32
SKP1-209ENST00000522552 STK25O00506 426 aa6.77□□□□□ -1.33
SKP1-209ENST00000522552 RIOK3O14730 519 aaKnown RBP6.76□□□□□ -1.33
SKP1-209ENST00000522552 CLCN6P51797 869 aa6.76□□□□□ -1.33
SKP1-209ENST00000522552 IFNL1Q8IU54 200 aa6.76□□□□□ -1.33
SKP1-209ENST00000522552 PCDHB8Q9UN66 801 aa6.76□□□□□ -1.33
SKP1-209ENST00000522552 PDIA4P13667 645 aaKnown RBP6.75□□□□□ -1.33
SKP1-209ENST00000522552 DCBLD2Q96PD2 775 aa6.75□□□□□ -1.33
SKP1-209ENST00000522552 TRPC6Q9Y210 931 aa6.75□□□□□ -1.33
SKP1-209ENST00000522552 NECTIN2Q92692 538 aa6.74□□□□□ -1.33
SKP1-209ENST00000522552 WDR70Q9NW82 654 aa6.74□□□□□ -1.33
SKP1-209ENST00000522552 RYDENQ9NUL5 291 aaKnown RBP6.73□□□□□ -1.33
SKP1-209ENST00000522552 ARID3CA6NKF2 412 aa6.72□□□□□ -1.33
SKP1-209ENST00000522552 FAM163AQ96GL9 167 aaPredicted RBP6.72□□□□□ -1.33
SKP1-209ENST00000522552 LOC105371045A0A1W2PR82 267 aa6.71□□□□□ -1.33
SKP1-209ENST00000522552 CHRM1P11229 460 aaPredicted RBP6.71□□□□□ -1.33
SKP1-209ENST00000522552 LCE2DQ5TA82 110 aaPredicted RBP6.71□□□□□ -1.33
SKP1-209ENST00000522552 ZMYND10O75800 440 aa6.71□□□□□ -1.34
SKP1-209ENST00000522552 CADPS2Q86UW7 1296 aa6.71□□□□□ -1.34
SKP1-209ENST00000522552 PELP1Q8IZL8 1130 aaKnown RBP6.71□□□□□ -1.34
SKP1-209ENST00000522552 APBB1O00213 710 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms