RNA–Protein interactions for RNA: ENST00000520520.1

CTNNA1-223, Transcript of catenin alpha 1, human

TSL 3

Gene CTNNA1, Length 484 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNNA1-223	ENST00000520520	GRIN2A	Q12879	1464 aa		14	□□□□□ -0.17
CTNNA1-223	ENST00000520520	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.99	□□□□□ -0.17
CTNNA1-223	ENST00000520520	ADAMTS12	P58397	1594 aa		13.99	□□□□□ -0.17
CTNNA1-223	ENST00000520520	CEP170	Q5SW79	1584 aa		13.98	□□□□□ -0.17
CTNNA1-223	ENST00000520520	HRC	P23327	699 aa		13.95	□□□□□ -0.18
CTNNA1-223	ENST00000520520	NCBP3	Q53F19	620 aa	Known RBP	13.95	□□□□□ -0.18
CTNNA1-223	ENST00000520520	CNKSR2	Q8WXI2	1034 aa		13.94	□□□□□ -0.18
CTNNA1-223	ENST00000520520	TOP2B	Q02880	1626 aa		13.93	□□□□□ -0.18
CTNNA1-223	ENST00000520520	BIVM-ERCC5	R4GMW8	1640 aa		13.93	□□□□□ -0.18
CTNNA1-223	ENST00000520520	FHAD1	B1AJZ9	1412 aa		13.91	□□□□□ -0.18
CTNNA1-223	ENST00000520520	NUP160	Q12769	1436 aa		13.91	□□□□□ -0.18
CTNNA1-223	ENST00000520520	SHROOM2	Q13796	1616 aa		13.87	□□□□□ -0.19
CTNNA1-223	ENST00000520520	PRG4	Q92954	1404 aa	Predicted RBP	13.87	□□□□□ -0.19
CTNNA1-223	ENST00000520520	ERICH3	Q5RHP9	1530 aa		13.86	□□□□□ -0.19
CTNNA1-223	ENST00000520520	NPM3	O75607	178 aa	Known RBP	13.85	□□□□□ -0.19
CTNNA1-223	ENST00000520520	DMRT2	Q9Y5R5	561 aa		13.84	□□□□□ -0.19
CTNNA1-223	ENST00000520520	JPH4	Q96JJ6	628 aa		13.83	□□□□□ -0.2
CTNNA1-223	ENST00000520520	KIF13A	Q9H1H9	1805 aa		13.82	□□□□□ -0.2
CTNNA1-223	ENST00000520520	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.8	□□□□□ -0.2
CTNNA1-223	ENST00000520520	NPM1	P06748	294 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
CTNNA1-223	ENST00000520520	RUSC2	Q8N2Y8	1516 aa		13.79	□□□□□ -0.2
CTNNA1-223	ENST00000520520	FAM69C	Q0P6D2	419 aa		13.78	□□□□□ -0.2
CTNNA1-223	ENST00000520520	PCGF6	Q9BYE7	350 aa		13.73	□□□□□ -0.21
CTNNA1-223	ENST00000520520	ADCY10	Q96PN6	1610 aa		13.72	□□□□□ -0.21
CTNNA1-223	ENST00000520520	TSPOAP1	O95153	1857 aa		13.71	□□□□□ -0.21
CTNNA1-223	ENST00000520520	ABCC10	Q5T3U5	1492 aa		13.7	□□□□□ -0.22
CTNNA1-223	ENST00000520520	DIP2B	Q9P265	1576 aa		13.69	□□□□□ -0.22
CTNNA1-223	ENST00000520520	KIF27	Q86VH2	1401 aa		13.68	□□□□□ -0.22
CTNNA1-223	ENST00000520520	IGF1R	P08069	1367 aa		13.68	□□□□□ -0.22
CTNNA1-223	ENST00000520520	MAPKBP1	O60336	1514 aa		13.67	□□□□□ -0.22
CTNNA1-223	ENST00000520520	KIAA0586	Q9BVV6	1533 aa		13.67	□□□□□ -0.22
CTNNA1-223	ENST00000520520	CUL7	Q14999	1698 aa		13.66	□□□□□ -0.22
CTNNA1-223	ENST00000520520	KDM6B	O15054	1643 aa		13.65	□□□□□ -0.22
CTNNA1-223	ENST00000520520	TRIM26	Q12899	539 aa	Predicted RBP	13.65	□□□□□ -0.22
CTNNA1-223	ENST00000520520	RNF216	Q9NWF9	866 aa	Predicted RBP	13.65	□□□□□ -0.22
CTNNA1-223	ENST00000520520	PTPRG	P23470	1445 aa		13.62	□□□□□ -0.23
CTNNA1-223	ENST00000520520	CARMIL1	Q5VZK9	1371 aa		13.61	□□□□□ -0.23
CTNNA1-223	ENST00000520520	HOXD11	P31277	338 aa	Predicted RBP	13.61	□□□□□ -0.23
CTNNA1-223	ENST00000520520	ZEB1	P37275	1124 aa	Predicted RBP	13.59	□□□□□ -0.23
CTNNA1-223	ENST00000520520	CARMIL2	Q6F5E8	1435 aa		13.57	□□□□□ -0.24
CTNNA1-223	ENST00000520520	TNIK	Q9UKE5	1360 aa		13.57	□□□□□ -0.24
CTNNA1-223	ENST00000520520	KDM4F	A0A1W2PPD8	638 aa		13.56	□□□□□ -0.24
CTNNA1-223	ENST00000520520	IQGAP2	Q13576	1575 aa		13.56	□□□□□ -0.24
CTNNA1-223	ENST00000520520	ASXL2	Q76L83	1435 aa		13.55	□□□□□ -0.24
CTNNA1-223	ENST00000520520	LOC105371045	A0A1W2PR82	267 aa		13.54	□□□□□ -0.24
CTNNA1-223	ENST00000520520	ABCC2	Q92887	1545 aa		13.54	□□□□□ -0.24
CTNNA1-223	ENST00000520520	PLB1	Q6P1J6	1458 aa		13.49	□□□□□ -0.25
CTNNA1-223	ENST00000520520	UACA	Q9BZF9	1416 aa		13.49	□□□□□ -0.25
CTNNA1-223	ENST00000520520	PPRC1	Q5VV67	1664 aa	Known RBP	13.49	□□□□□ -0.25
CTNNA1-223	ENST00000520520	DISP1	Q96F81	1524 aa		13.49	□□□□□ -0.25
CTNNA1-223	ENST00000520520	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.47	□□□□□ -0.25
CTNNA1-223	ENST00000520520	RAPGEF2	Q9Y4G8	1499 aa		13.46	□□□□□ -0.25
CTNNA1-223	ENST00000520520	ZCCHC11	Q5TAX3	1644 aa	Known RBP	13.46	□□□□□ -0.26
CTNNA1-223	ENST00000520520	UHRF1BP1L	A0JNW5	1464 aa		13.45	□□□□□ -0.26
CTNNA1-223	ENST00000520520	GLI2	P10070	1586 aa		13.45	□□□□□ -0.26
CTNNA1-223	ENST00000520520	ADGRL1	O94910	1474 aa		13.44	□□□□□ -0.26
CTNNA1-223	ENST00000520520	KIAA0556	O60303	1618 aa		13.44	□□□□□ -0.26
CTNNA1-223	ENST00000520520	EPRS	P07814	1512 aa	Known RBP	13.44	□□□□□ -0.26
CTNNA1-223	ENST00000520520	UGGT2	Q9NYU1	1516 aa		13.42	□□□□□ -0.26
CTNNA1-223	ENST00000520520	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.42	□□□□□ -0.26
CTNNA1-223	ENST00000520520	KDM5B	Q9UGL1	1544 aa		13.41	□□□□□ -0.26
CTNNA1-223	ENST00000520520	MAP3K4	Q9Y6R4	1608 aa		13.41	□□□□□ -0.26
CTNNA1-223	ENST00000520520	ARID3C	A6NKF2	412 aa		13.4	□□□□□ -0.26
CTNNA1-223	ENST00000520520	KCNH8	Q96L42	1107 aa		13.4	□□□□□ -0.26
CTNNA1-223	ENST00000520520	TEX14	Q8IWB6	1497 aa		13.39	□□□□□ -0.27
CTNNA1-223	ENST00000520520	CTTNBP2	Q8WZ74	1663 aa		13.39	□□□□□ -0.27
CTNNA1-223	ENST00000520520	WDR7	Q9Y4E6	1490 aa		13.37	□□□□□ -0.27
CTNNA1-223	ENST00000520520	ILDR1	Q86SU0	546 aa	Predicted RBP	13.35	□□□□□ -0.27
CTNNA1-223	ENST00000520520	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.35	□□□□□ -0.27
CTNNA1-223	ENST00000520520	P3H3	Q8IVL6	736 aa		13.35	□□□□□ -0.27
CTNNA1-223	ENST00000520520	CD109	Q6YHK3	1445 aa		13.32	□□□□□ -0.28
CTNNA1-223	ENST00000520520	GOLGA3	Q08378	1498 aa		13.32	□□□□□ -0.28
CTNNA1-223	ENST00000520520	HECW2	Q9P2P5	1572 aa		13.31	□□□□□ -0.28
CTNNA1-223	ENST00000520520	ABCA8	O94911	1581 aa		13.3	□□□□□ -0.28
CTNNA1-223	ENST00000520520	RANGAP1	P46060	587 aa	Predicted RBP	13.3	□□□□□ -0.28
CTNNA1-223	ENST00000520520	EEA1	Q15075	1411 aa		13.3	□□□□□ -0.28
CTNNA1-223	ENST00000520520	CFAP43	Q8NDM7	1665 aa		13.29	□□□□□ -0.28
CTNNA1-223	ENST00000520520	POTED	Q86YR6	584 aa		13.28	□□□□□ -0.28
CTNNA1-223	ENST00000520520	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.27	□□□□□ -0.29
CTNNA1-223	ENST00000520520	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.27	□□□□□ -0.29
CTNNA1-223	ENST00000520520	FAM9A	Q8IZU1	332 aa	Predicted RBP	13.27	□□□□□ -0.29
CTNNA1-223	ENST00000520520	KIF21B	O75037	1637 aa		13.27	□□□□□ -0.29
CTNNA1-223	ENST00000520520	MAGI3	Q5TCQ9	1506 aa		13.25	□□□□□ -0.29
CTNNA1-223	ENST00000520520	PRX	Q9BXM0	1461 aa		13.24	□□□□□ -0.29
CTNNA1-223	ENST00000520520	ATP10B	O94823	1461 aa		13.2	□□□□□ -0.3
CTNNA1-223	ENST00000520520	RAPGEF3	O95398	923 aa		13.19	□□□□□ -0.3
CTNNA1-223	ENST00000520520	EHMT2	Q96KQ7	1210 aa		13.18	□□□□□ -0.3
CTNNA1-223	ENST00000520520	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.17	□□□□□ -0.3
CTNNA1-223	ENST00000520520	RAPGEF6	Q8TEU7	1601 aa		13.17	□□□□□ -0.3
CTNNA1-223	ENST00000520520	CSRNP3	Q8WYN3	585 aa		13.16	□□□□□ -0.3
CTNNA1-223	ENST00000520520	ARAP3	Q8WWN8	1544 aa		13.15	□□□□□ -0.3
CTNNA1-223	ENST00000520520	ABCA9	Q8IUA7	1624 aa		13.15	□□□□□ -0.3
CTNNA1-223	ENST00000520520	SAMD9	Q5K651	1589 aa		13.14	□□□□□ -0.31
CTNNA1-223	ENST00000520520	FHOD3	Q2V2M9	1422 aa		13.13	□□□□□ -0.31
CTNNA1-223	ENST00000520520	ZBTB22	O15209	634 aa		13.13	□□□□□ -0.31
CTNNA1-223	ENST00000520520	SLC4A2	P04920	1241 aa		13.12	□□□□□ -0.31
CTNNA1-223	ENST00000520520	DCAF8L1	A6NGE4	600 aa		13.11	□□□□□ -0.31
CTNNA1-223	ENST00000520520	CEP162	Q5TB80	1403 aa		13.11	□□□□□ -0.31
CTNNA1-223	ENST00000520520	PTPRM	P28827	1452 aa		13.1	□□□□□ -0.31
CTNNA1-223	ENST00000520520	NUP153	P49790	1475 aa	Known RBP	13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms