RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CLEC11AQ9Y240 323 aa16.61■□□□□ 0.25
NUP54-215ENST00000514313 CREBZFQ9NS37 354 aa16.6■□□□□ 0.25
NUP54-215ENST00000514313 DCAF8Q5TAQ9 597 aa16.58■□□□□ 0.24
NUP54-215ENST00000514313 PRR29P0C7W0 189 aa16.56■□□□□ 0.24
NUP54-215ENST00000514313 TAOK2Q9UL54 1235 aa16.56■□□□□ 0.24
NUP54-215ENST00000514313 PRKCSHP14314 528 aaPredicted RBP16.55■□□□□ 0.24
NUP54-215ENST00000514313 MNX1P50219 401 aaPredicted RBP16.55■□□□□ 0.24
NUP54-215ENST00000514313 REM2Q8IYK8 340 aaPredicted RBP16.53■□□□□ 0.24
NUP54-215ENST00000514313 DNAJC5Q9H3Z4 198 aa16.52■□□□□ 0.24
NUP54-215ENST00000514313 RIOK3O14730 519 aaKnown RBP16.51■□□□□ 0.23
NUP54-215ENST00000514313 FAM212AQ96EL1 285 aa16.51■□□□□ 0.23
NUP54-215ENST00000514313 NKX1-1Q15270 411 aaPredicted RBP16.44■□□□□ 0.22
NUP54-215ENST00000514313 RASEFQ8IZ41 740 aa16.44■□□□□ 0.22
NUP54-215ENST00000514313 VGFO15240 615 aaPredicted RBP16.39■□□□□ 0.21
NUP54-215ENST00000514313 STK25O00506 426 aa16.37■□□□□ 0.21
NUP54-215ENST00000514313 PITPNM1O00562 1244 aa16.36■□□□□ 0.21
NUP54-215ENST00000514313 CHRM1P11229 460 aaPredicted RBP16.36■□□□□ 0.21
NUP54-215ENST00000514313 TPRNQ4KMQ1 711 aa16.35■□□□□ 0.21
NUP54-215ENST00000514313 GTPBP6O43824 516 aaPredicted RBP16.34■□□□□ 0.21
NUP54-215ENST00000514313 PYGBP11216 843 aa16.29■□□□□ 0.2
NUP54-215ENST00000514313 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.28■□□□□ 0.2
NUP54-215ENST00000514313 ZFP91Q96JP5 570 aaPredicted RBP16.28■□□□□ 0.2
NUP54-215ENST00000514313 SGIP1Q9BQI5 828 aa16.28■□□□□ 0.2
NUP54-215ENST00000514313 BCL11BQ9C0K0 894 aaPredicted RBP16.26■□□□□ 0.19
NUP54-215ENST00000514313 STK24Q9Y6E0 443 aa16.25■□□□□ 0.19
NUP54-215ENST00000514313 NBR1Q14596 966 aa16.2■□□□□ 0.18
NUP54-215ENST00000514313 CHADLQ6NUI6 762 aa16.17■□□□□ 0.18
NUP54-215ENST00000514313 TSPYL2Q9H2G4 693 aaPredicted RBP16.1■□□□□ 0.17
NUP54-215ENST00000514313 RYDENQ9NUL5 291 aaKnown RBP16.1■□□□□ 0.17
NUP54-215ENST00000514313 FARP1Q9Y4F1 1045 aaPredicted RBP16.05■□□□□ 0.16
NUP54-215ENST00000514313 ZNF467Q7Z7K2 595 aaPredicted RBP16.04■□□□□ 0.16
NUP54-215ENST00000514313 PDAP1Q13442 181 aaKnown RBP15.97■□□□□ 0.15
NUP54-215ENST00000514313 PCDHB8Q9UN66 801 aa15.97■□□□□ 0.15
NUP54-215ENST00000514313 PCDHB13Q9Y5F0 798 aa15.97■□□□□ 0.15
NUP54-215ENST00000514313 CCDC61Q9Y6R9 512 aa15.94■□□□□ 0.14
NUP54-215ENST00000514313 PRKAR2AP13861 404 aaKnown RBP15.93■□□□□ 0.14
NUP54-215ENST00000514313 CADPS2Q86UW7 1296 aa15.88■□□□□ 0.13
NUP54-215ENST00000514313 ZNF579Q8NAF0 562 aaKnown RBP15.88■□□□□ 0.13
NUP54-215ENST00000514313 PSEN1P49768 467 aa15.87■□□□□ 0.13
NUP54-215ENST00000514313 FXR2P51116 673 aaKnown RBP eCLIP15.85■□□□□ 0.13
NUP54-215ENST00000514313 MFRPQ9BY79 579 aa15.84■□□□□ 0.13
NUP54-215ENST00000514313 P3H3Q8IVL6 736 aa15.83■□□□□ 0.12
NUP54-215ENST00000514313 IFNL1Q8IU54 200 aa15.78■□□□□ 0.12
NUP54-215ENST00000514313 PAK3O75914 559 aaPredicted RBP15.76■□□□□ 0.11
NUP54-215ENST00000514313 KCNV2Q8TDN2 545 aa15.76■□□□□ 0.11
NUP54-215ENST00000514313 WDR70Q9NW82 654 aa15.76■□□□□ 0.11
NUP54-215ENST00000514313 MAP3K13O43283 966 aa15.73■□□□□ 0.11
NUP54-215ENST00000514313 KIF12Q96FN5 646 aa15.72■□□□□ 0.11
NUP54-215ENST00000514313 EFCAB3Q8N7B9 438 aa15.7■□□□□ 0.1
NUP54-215ENST00000514313 PPP1R37O75864 691 aa15.69■□□□□ 0.1
NUP54-215ENST00000514313 CABP2Q9NPB3 220 aa15.69■□□□□ 0.1
NUP54-215ENST00000514313 PIP4P2Q8N4L2 257 aa15.68■□□□□ 0.1
NUP54-215ENST00000514313 FBXO22Q8NEZ5 403 aa15.68■□□□□ 0.1
NUP54-215ENST00000514313 CHRDL2Q6WN34 429 aa15.66■□□□□ 0.1
NUP54-215ENST00000514313 PHF8Q9UPP1 1060 aa15.65■□□□□ 0.1
NUP54-215ENST00000514313 NLRP6P59044 892 aa15.64■□□□□ 0.09
NUP54-215ENST00000514313 SOX12O15370 315 aa15.62■□□□□ 0.09
NUP54-215ENST00000514313 ZRANB1Q9UGI0 708 aa15.58■□□□□ 0.08
NUP54-215ENST00000514313 LMOD2Q6P5Q4 547 aa15.56■□□□□ 0.08
NUP54-215ENST00000514313 PHF12Q96QT6 1004 aa15.55■□□□□ 0.08
NUP54-215ENST00000514313 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.54■□□□□ 0.08
NUP54-215ENST00000514313 CD44P16070 742 aaKnown RBP15.53■□□□□ 0.08
NUP54-215ENST00000514313 E2F4Q16254 413 aa15.5■□□□□ 0.07
NUP54-215ENST00000514313 ARHGEF1Q92888 912 aaKnown RBP15.5■□□□□ 0.07
NUP54-215ENST00000514313 MS4A4AQ96JQ5 239 aa15.49■□□□□ 0.07
NUP54-215ENST00000514313 NCKAP5LQ9HCH0 1330 aa15.47■□□□□ 0.07
NUP54-215ENST00000514313 POTEHQ6S545 545 aa15.46■□□□□ 0.07
NUP54-215ENST00000514313 TMEM106CQ9BVX2 250 aa15.42■□□□□ 0.06
NUP54-215ENST00000514313 TULP1O00294 542 aaPredicted RBP15.41■□□□□ 0.06
NUP54-215ENST00000514313 TRPC6Q9Y210 931 aa15.41■□□□□ 0.06
NUP54-215ENST00000514313 GOLGA2Q08379 1002 aa15.4■□□□□ 0.06
NUP54-215ENST00000514313 LARP6Q9BRS8 491 aaKnown RBP15.4■□□□□ 0.06
NUP54-215ENST00000514313 SEMA3EO15041 775 aa15.39■□□□□ 0.05
NUP54-215ENST00000514313 MS4A3Q96HJ5 214 aa15.39■□□□□ 0.05
NUP54-215ENST00000514313 MFSD10Q14728 455 aa15.38■□□□□ 0.05
NUP54-215ENST00000514313 TESPA1A2RU30 521 aaPredicted RBP15.37■□□□□ 0.05
NUP54-215ENST00000514313 PDE4AP27815 886 aa15.37■□□□□ 0.05
NUP54-215ENST00000514313 CRISPLD2Q9H0B8 497 aa15.37■□□□□ 0.05
NUP54-215ENST00000514313 DDX27Q96GQ7 796 aaKnown RBP15.32■□□□□ 0.04
NUP54-215ENST00000514313 MKRN3Q13064 507 aaKnown RBP15.31■□□□□ 0.04
NUP54-215ENST00000514313 ZC3H15Q8WU90 426 aaKnown RBP15.31■□□□□ 0.04
NUP54-215ENST00000514313 TMEM132AQ24JP5 1023 aa15.3■□□□□ 0.04
NUP54-215ENST00000514313 GTF3C3Q9Y5Q9 886 aa15.29■□□□□ 0.04
NUP54-215ENST00000514313 C19orf67A6NJJ6 358 aa15.28■□□□□ 0.04
NUP54-215ENST00000514313 TIMELESSQ9UNS1 1208 aa15.27■□□□□ 0.04
NUP54-215ENST00000514313 ARIH1Q9Y4X5 557 aaPredicted RBP15.26■□□□□ 0.03
NUP54-215ENST00000514313 TIE1P35590 1138 aa15.24■□□□□ 0.03
NUP54-215ENST00000514313 CAMK2BQ13554 666 aa15.24■□□□□ 0.03
NUP54-215ENST00000514313 TTLL13PA6NNM8 815 aa15.23■□□□□ 0.03
NUP54-215ENST00000514313 BRPF1P55201 1214 aaPredicted RBP15.21■□□□□ 0.03
NUP54-215ENST00000514313 ILDR1Q86SU0 546 aaPredicted RBP15.21■□□□□ 0.03
NUP54-215ENST00000514313 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.19■□□□□ 0.02
NUP54-215ENST00000514313 BMP2KQ9NSY1 1161 aaPredicted RBP15.18■□□□□ 0.02
NUP54-215ENST00000514313 SMYD5Q6GMV2 418 aa15.17■□□□□ 0.02
NUP54-215ENST00000514313 SLC24A3Q9HC58 644 aa15.17■□□□□ 0.02
NUP54-215ENST00000514313 PPP1R15BQ5SWA1 713 aa15.15■□□□□ 0.02
NUP54-215ENST00000514313 TRIM35Q9UPQ4 493 aa15.13■□□□□ 0.01
NUP54-215ENST00000514313 GPHNQ9NQX3 736 aaPredicted RBP15.12■□□□□ 0.01
NUP54-215ENST00000514313 ZMYND10O75800 440 aa15.11■□□□□ 0.01
NUP54-215ENST00000514313 GALR2O43603 387 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms