RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PLPPR3Q6T4P5 718 aa12.61□□□□□ -0.39
LIMCH1-219ENST00000514096 PRG4Q92954 1404 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-219ENST00000514096 PPARGC1BQ86YN6 1023 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-219ENST00000514096 ARHGEF11O15085 1522 aa12.59□□□□□ -0.39
LIMCH1-219ENST00000514096 FHAD1B1AJZ9 1412 aa12.59□□□□□ -0.39
LIMCH1-219ENST00000514096 GRIN2AQ12879 1464 aa12.58□□□□□ -0.4
LIMCH1-219ENST00000514096 MAGI1Q96QZ7 1491 aaPredicted RBP12.56□□□□□ -0.4
LIMCH1-219ENST00000514096 FAM69CQ0P6D2 419 aa12.56□□□□□ -0.4
LIMCH1-219ENST00000514096 ERCC6L2Q5T890 1561 aa12.54□□□□□ -0.4
LIMCH1-219ENST00000514096 MYT1LQ9UL68 1186 aa12.54□□□□□ -0.4
LIMCH1-219ENST00000514096 RIMBP3CA6NJZ7 1639 aa12.5□□□□□ -0.41
LIMCH1-219ENST00000514096 RIMBP3BA6NNM3 1639 aa12.5□□□□□ -0.41
LIMCH1-219ENST00000514096 RIMBP3Q9UFD9 1639 aa12.5□□□□□ -0.41
LIMCH1-219ENST00000514096 PBRM1Q86U86 1689 aa12.5□□□□□ -0.41
LIMCH1-219ENST00000514096 BIVM-ERCC5R4GMW8 1640 aa12.5□□□□□ -0.41
LIMCH1-219ENST00000514096 RAPGEF2Q9Y4G8 1499 aa12.5□□□□□ -0.41
LIMCH1-219ENST00000514096 ARAP1Q96P48 1450 aa12.49□□□□□ -0.41
LIMCH1-219ENST00000514096 PTPRGP23470 1445 aa12.49□□□□□ -0.41
LIMCH1-219ENST00000514096 ABCA5Q8WWZ7 1642 aa12.46□□□□□ -0.41
LIMCH1-219ENST00000514096 CEP170Q5SW79 1584 aa12.46□□□□□ -0.42
LIMCH1-219ENST00000514096 ADAMTS12P58397 1594 aa12.44□□□□□ -0.42
LIMCH1-219ENST00000514096 PRKCSHP14314 528 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-219ENST00000514096 CARMIL2Q6F5E8 1435 aa12.42□□□□□ -0.42
LIMCH1-219ENST00000514096 ZNF777Q9ULD5 760 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-219ENST00000514096 ERICH3Q5RHP9 1530 aa12.41□□□□□ -0.42
LIMCH1-219ENST00000514096 FHOD3Q2V2M9 1422 aa12.41□□□□□ -0.42
LIMCH1-219ENST00000514096 WDR97A6NE52 1622 aa12.38□□□□□ -0.43
LIMCH1-219ENST00000514096 NUP160Q12769 1436 aa12.37□□□□□ -0.43
LIMCH1-219ENST00000514096 KIAA0586Q9BVV6 1533 aa12.36□□□□□ -0.43
LIMCH1-219ENST00000514096 PLB1Q6P1J6 1458 aa12.35□□□□□ -0.43
LIMCH1-219ENST00000514096 AEBP2Q6ZN18 517 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-219ENST00000514096 TNIKQ9UKE5 1360 aa12.33□□□□□ -0.44
LIMCH1-219ENST00000514096 MLECQ14165 292 aa12.33□□□□□ -0.44
LIMCH1-219ENST00000514096 APLP2Q06481 763 aa12.33□□□□□ -0.44
LIMCH1-219ENST00000514096 PLEKHD1A6NEE1 506 aa12.31□□□□□ -0.44
LIMCH1-219ENST00000514096 ARID4BQ4LE39 1312 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-219ENST00000514096 CLASP1Q7Z460 1538 aa12.3□□□□□ -0.44
LIMCH1-219ENST00000514096 ITGAEP38570 1179 aa12.29□□□□□ -0.44
LIMCH1-219ENST00000514096 IQGAP2Q13576 1575 aa12.29□□□□□ -0.44
LIMCH1-219ENST00000514096 PRXQ9BXM0 1461 aa12.27□□□□□ -0.44
LIMCH1-219ENST00000514096 RAPGEF3O95398 923 aa12.26□□□□□ -0.45
LIMCH1-219ENST00000514096 GOLGA3Q08378 1498 aa12.25□□□□□ -0.45
LIMCH1-219ENST00000514096 CUL7Q14999 1698 aa12.25□□□□□ -0.45
LIMCH1-219ENST00000514096 UACAQ9BZF9 1416 aa12.24□□□□□ -0.45
LIMCH1-219ENST00000514096 TSPOAP1O95153 1857 aa12.23□□□□□ -0.45
LIMCH1-219ENST00000514096 CLIP1P30622 1438 aa12.22□□□□□ -0.45
LIMCH1-219ENST00000514096 EEA1Q15075 1411 aa12.21□□□□□ -0.45
LIMCH1-219ENST00000514096 ASXL2Q76L83 1435 aa12.21□□□□□ -0.45
LIMCH1-219ENST00000514096 DISP1Q96F81 1524 aa12.21□□□□□ -0.46
LIMCH1-219ENST00000514096 SENP3Q9H4L4 574 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-219ENST00000514096 CDK11AQ9UQ88 783 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-219ENST00000514096 ERICH6Q7L0X2 663 aa12.17□□□□□ -0.46
LIMCH1-219ENST00000514096 CEP162Q5TB80 1403 aa12.14□□□□□ -0.47
LIMCH1-219ENST00000514096 CDK13Q14004 1512 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-219ENST00000514096 FAM50AQ14320 339 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-219ENST00000514096 MTUS2Q5JR59 1369 aa12.12□□□□□ -0.47
LIMCH1-219ENST00000514096 AFAP1Q8N556 730 aa12.12□□□□□ -0.47
LIMCH1-219ENST00000514096 CHIC2Q9UKJ5 165 aa12.12□□□□□ -0.47
LIMCH1-219ENST00000514096 KIAA0556O60303 1618 aa12.11□□□□□ -0.47
LIMCH1-219ENST00000514096 ADCY10Q96PN6 1610 aa12.11□□□□□ -0.47
LIMCH1-219ENST00000514096 HNRNPMP52272 730 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMCH1-219ENST00000514096 CD109Q6YHK3 1445 aa12.1□□□□□ -0.47
LIMCH1-219ENST00000514096 ARHGAP35Q9NRY4 1499 aa12.1□□□□□ -0.47
LIMCH1-219ENST00000514096 KANK4Q5T7N3 995 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-219ENST00000514096 BCL11AQ9H165 835 aa12.1□□□□□ -0.47
LIMCH1-219ENST00000514096 ABCC2Q92887 1545 aa12.09□□□□□ -0.47
LIMCH1-219ENST00000514096 ZNF644Q9H582 1327 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-219ENST00000514096 CFDP1Q9UEE9 299 aaPredicted RBP12.08□□□□□ -0.47
LIMCH1-219ENST00000514096 ATP10BO94823 1461 aa12.08□□□□□ -0.48
LIMCH1-219ENST00000514096 UGGT2Q9NYU1 1516 aa12.06□□□□□ -0.48
LIMCH1-219ENST00000514096 CTTNBP2Q8WZ74 1663 aa12.05□□□□□ -0.48
LIMCH1-219ENST00000514096 SHROOM2Q13796 1616 aa12.04□□□□□ -0.48
LIMCH1-219ENST00000514096 GGT6Q6P531 493 aa12.04□□□□□ -0.48
LIMCH1-219ENST00000514096 ESF1Q9H501 851 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-219ENST00000514096 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIMCH1-219ENST00000514096 FMN1Q68DA7 1419 aa12.03□□□□□ -0.48
LIMCH1-219ENST00000514096 ABCC10Q5T3U5 1492 aa12.02□□□□□ -0.48
LIMCH1-219ENST00000514096 EFCAB2Q5VUJ9 269 aa12.02□□□□□ -0.48
LIMCH1-219ENST00000514096 NUP153P49790 1475 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-219ENST00000514096 WDR7Q9Y4E6 1490 aa12.02□□□□□ -0.49
LIMCH1-219ENST00000514096 CEBPAP49715 358 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-219ENST00000514096 KIF21BO75037 1637 aa12□□□□□ -0.49
LIMCH1-219ENST00000514096 EPRSP07814 1512 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-219ENST00000514096 ZCCHC11Q5TAX3 1644 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-219ENST00000514096 COL17A1Q9UMD9 1497 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-219ENST00000514096 CCNB3Q8WWL7 1395 aa11.97□□□□□ -0.49
LIMCH1-219ENST00000514096 RAPGEF6Q8TEU7 1601 aa11.95□□□□□ -0.5
LIMCH1-219ENST00000514096 SCAPERQ9BY12 1400 aa11.95□□□□□ -0.5
LIMCH1-219ENST00000514096 KDM5BQ9UGL1 1544 aa11.95□□□□□ -0.5
LIMCH1-219ENST00000514096 HSPA2P54652 639 aa11.94□□□□□ -0.5
LIMCH1-219ENST00000514096 RRP7BPQ9NSQ0 103 aa11.94□□□□□ -0.5
LIMCH1-219ENST00000514096 KDM4FA0A1W2PPD8 638 aa11.92□□□□□ -0.5
LIMCH1-219ENST00000514096 TSPY4P0CV99 314 aa11.92□□□□□ -0.5
LIMCH1-219ENST00000514096 TSPY10P0CW01 314 aa11.92□□□□□ -0.5
LIMCH1-219ENST00000514096 KDM6BO15054 1643 aa11.92□□□□□ -0.5
LIMCH1-219ENST00000514096 ARHGAP5Q13017 1502 aa11.91□□□□□ -0.5
LIMCH1-219ENST00000514096 DIP2BQ9P265 1576 aa11.91□□□□□ -0.5
LIMCH1-219ENST00000514096 PCF11O94913 1555 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-219ENST00000514096 ABCA8O94911 1581 aa11.91□□□□□ -0.5
LIMCH1-219ENST00000514096 FANCAO15360 1455 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms