RNA–Protein interactions for RNA: ENST00000512476.1

TRAPPC11-209, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC11, Length 2,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-209ENST00000512476 UBE2Q2Q8WVN8 375 aa9.82□□□□□ -0.84
TRAPPC11-209ENST00000512476 RAD21O60216 631 aa9.81□□□□□ -0.84
TRAPPC11-209ENST00000512476 LMOD2Q6P5Q4 547 aa9.8□□□□□ -0.84
TRAPPC11-209ENST00000512476 MTMR7Q9Y216 660 aa9.8□□□□□ -0.84
TRAPPC11-209ENST00000512476 FOXD4L5Q5VV16 416 aaPredicted RBP9.8□□□□□ -0.84
TRAPPC11-209ENST00000512476 FOXD4L4Q8WXT5 416 aaPredicted RBP9.8□□□□□ -0.84
TRAPPC11-209ENST00000512476 MYCNP04198 464 aaPredicted RBP9.79□□□□□ -0.84
TRAPPC11-209ENST00000512476 RGS22Q8NE09 1264 aa9.79□□□□□ -0.84
TRAPPC11-209ENST00000512476 APBB1O00213 710 aa9.78□□□□□ -0.84
TRAPPC11-209ENST00000512476 PIAS4Q8N2W9 510 aaPredicted RBP9.78□□□□□ -0.84
TRAPPC11-209ENST00000512476 PUS7Q96PZ0 661 aaKnown RBP9.78□□□□□ -0.84
TRAPPC11-209ENST00000512476 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.77□□□□□ -0.85
TRAPPC11-209ENST00000512476 BRD2P25440 801 aaKnown RBP9.74□□□□□ -0.85
TRAPPC11-209ENST00000512476 SLC24A3Q9HC58 644 aa9.74□□□□□ -0.85
TRAPPC11-209ENST00000512476 RBM25P49756 843 aaKnown RBP9.74□□□□□ -0.85
TRAPPC11-209ENST00000512476 FAM9AQ8IZU1 332 aaPredicted RBP9.72□□□□□ -0.85
TRAPPC11-209ENST00000512476 HMGB1P09429 215 aaKnown RBP9.7□□□□□ -0.86
TRAPPC11-209ENST00000512476 SPDYE4A6NLX3 237 aa9.68□□□□□ -0.86
TRAPPC11-209ENST00000512476 PROM2Q8N271 834 aa9.68□□□□□ -0.86
TRAPPC11-209ENST00000512476 PDE4CQ08493 712 aa9.65□□□□□ -0.86
TRAPPC11-209ENST00000512476 NKX1-1Q15270 411 aaPredicted RBP9.65□□□□□ -0.86
TRAPPC11-209ENST00000512476 POLR3GLQ9BT43 218 aa9.65□□□□□ -0.86
TRAPPC11-209ENST00000512476 AEBP1Q8IUX7 1158 aa9.63□□□□□ -0.87
TRAPPC11-209ENST00000512476 CCDC82Q8N4S0 544 aa9.63□□□□□ -0.87
TRAPPC11-209ENST00000512476 ZC3H15Q8WU90 426 aaKnown RBP9.63□□□□□ -0.87
TRAPPC11-209ENST00000512476 MKRN3Q13064 507 aaKnown RBP9.62□□□□□ -0.87
TRAPPC11-209ENST00000512476 GPBP1L1Q9HC44 474 aaPredicted RBP9.62□□□□□ -0.87
TRAPPC11-209ENST00000512476 ZNF692Q9BU19 519 aaPredicted RBP9.61□□□□□ -0.87
TRAPPC11-209ENST00000512476 BCL11AQ9H165 835 aa9.6□□□□□ -0.87
TRAPPC11-209ENST00000512476 IL27Q8NEV9 243 aa9.59□□□□□ -0.87
TRAPPC11-209ENST00000512476 USP35Q9P2H5 1018 aa9.57□□□□□ -0.88
TRAPPC11-209ENST00000512476 MFAP1P55081 439 aaKnown RBP9.56□□□□□ -0.88
TRAPPC11-209ENST00000512476 SPOCK2Q92563 424 aa9.56□□□□□ -0.88
TRAPPC11-209ENST00000512476 KCNV2Q8TDN2 545 aa9.55□□□□□ -0.88
TRAPPC11-209ENST00000512476 GTPBP6O43824 516 aaPredicted RBP9.54□□□□□ -0.88
TRAPPC11-209ENST00000512476 FAM177A1Q8N128 213 aaPredicted RBP9.54□□□□□ -0.88
TRAPPC11-209ENST00000512476 RNF216Q9NWF9 866 aaPredicted RBP9.54□□□□□ -0.88
TRAPPC11-209ENST00000512476 TAF7LQ5H9L4 462 aa9.52□□□□□ -0.89
TRAPPC11-209ENST00000512476 TMCO4Q5TGY1 634 aa9.52□□□□□ -0.89
TRAPPC11-209ENST00000512476 GZF1Q9H116 711 aaPredicted RBP9.51□□□□□ -0.89
TRAPPC11-209ENST00000512476 IRX6P78412 446 aaPredicted RBP9.5□□□□□ -0.89
TRAPPC11-209ENST00000512476 TRIM41Q8WV44 630 aa9.49□□□□□ -0.89
TRAPPC11-209ENST00000512476 HS6ST3Q8IZP7 471 aa9.48□□□□□ -0.89
TRAPPC11-209ENST00000512476 CWC22Q9HCG8 908 aaKnown RBP9.48□□□□□ -0.89
TRAPPC11-209ENST00000512476 BRPF3Q9ULD4 1205 aa9.47□□□□□ -0.89
TRAPPC11-209ENST00000512476 BCL11BQ9C0K0 894 aaPredicted RBP9.46□□□□□ -0.9
TRAPPC11-209ENST00000512476 MKRN4PQ13434 485 aaPredicted RBP9.45□□□□□ -0.9
TRAPPC11-209ENST00000512476 TRAIPQ9BWF2 469 aa9.45□□□□□ -0.9
TRAPPC11-209ENST00000512476 SCAF1Q9H7N4 1312 aaKnown RBP9.45□□□□□ -0.9
TRAPPC11-209ENST00000512476 RNF25Q96BH1 459 aaPredicted RBP9.44□□□□□ -0.9
TRAPPC11-209ENST00000512476 CLUAP1Q96AJ1 413 aa9.44□□□□□ -0.9
TRAPPC11-209ENST00000512476 E9PSI1 815 aa9.42□□□□□ -0.9
TRAPPC11-209ENST00000512476 ZFP91Q96JP5 570 aaPredicted RBP9.42□□□□□ -0.9
TRAPPC11-209ENST00000512476 IRF5Q13568 498 aa9.42□□□□□ -0.9
TRAPPC11-209ENST00000512476 WDR70Q9NW82 654 aa9.41□□□□□ -0.9
TRAPPC11-209ENST00000512476 TMED8Q6PL24 325 aaPredicted RBP9.4□□□□□ -0.91
TRAPPC11-209ENST00000512476 PPM1GO15355 546 aaPredicted RBP9.39□□□□□ -0.91
TRAPPC11-209ENST00000512476 P3H3Q8IVL6 736 aa9.37□□□□□ -0.91
TRAPPC11-209ENST00000512476 ZNF592Q92610 1267 aa9.37□□□□□ -0.91
TRAPPC11-209ENST00000512476 RETREG2Q8NC44 543 aa9.37□□□□□ -0.91
TRAPPC11-209ENST00000512476 CERS3Q8IU89 383 aa9.36□□□□□ -0.91
TRAPPC11-209ENST00000512476 ZNF316A6NFI3 1004 aaPredicted RBP9.36□□□□□ -0.91
TRAPPC11-209ENST00000512476 ZMYND10O75800 440 aa9.36□□□□□ -0.91
TRAPPC11-209ENST00000512476 CIZ1Q9ULV3 898 aaPredicted RBP9.35□□□□□ -0.91
TRAPPC11-209ENST00000512476 KDM4CQ9H3R0 1056 aa9.34□□□□□ -0.91
TRAPPC11-209ENST00000512476 SEMA3EO15041 775 aa9.33□□□□□ -0.92
TRAPPC11-209ENST00000512476 CADPS2Q86UW7 1296 aa9.32□□□□□ -0.92
TRAPPC11-209ENST00000512476 TRAK2O60296 914 aa9.31□□□□□ -0.92
TRAPPC11-209ENST00000512476 CCDC136Q96JN2 1154 aa9.3□□□□□ -0.92
TRAPPC11-209ENST00000512476 ZNF777Q9ULD5 760 aaPredicted RBP9.3□□□□□ -0.92
TRAPPC11-209ENST00000512476 FBXW7Q969H0 707 aa9.29□□□□□ -0.92
TRAPPC11-209ENST00000512476 ONECUT3O60422 494 aaPredicted RBP9.28□□□□□ -0.92
TRAPPC11-209ENST00000512476 NEFLP07196 543 aa9.28□□□□□ -0.92
TRAPPC11-209ENST00000512476 POLA2Q14181 598 aa9.28□□□□□ -0.92
TRAPPC11-209ENST00000512476 RSPH4AQ5TD94 716 aa9.28□□□□□ -0.92
TRAPPC11-209ENST00000512476 FAM117AQ9C073 453 aa9.27□□□□□ -0.93
TRAPPC11-209ENST00000512476 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.27□□□□□ -0.93
TRAPPC11-209ENST00000512476 CCDC180Q9P1Z9 1646 aa9.26□□□□□ -0.93
TRAPPC11-209ENST00000512476 KDM4AO75164 1064 aa9.25□□□□□ -0.93
TRAPPC11-209ENST00000512476 A0A0U1RQG5 324 aaPredicted RBP9.24□□□□□ -0.93
TRAPPC11-209ENST00000512476 UNCXA6NJT0 531 aa9.24□□□□□ -0.93
TRAPPC11-209ENST00000512476 BARGINQ6ZT62 677 aa9.24□□□□□ -0.93
TRAPPC11-209ENST00000512476 ZNF526Q8TF50 670 aaPredicted RBP9.24□□□□□ -0.93
TRAPPC11-209ENST00000512476 BCCIPQ9P287 314 aaKnown RBP eCLIP9.24□□□□□ -0.93
TRAPPC11-209ENST00000512476 ARID4BQ4LE39 1312 aaPredicted RBP9.22□□□□□ -0.93
TRAPPC11-209ENST00000512476 CCDC125Q86Z20 511 aa9.22□□□□□ -0.93
TRAPPC11-209ENST00000512476 ZNF219Q9P2Y4 722 aaPredicted RBP9.22□□□□□ -0.93
TRAPPC11-209ENST00000512476 PRDM16Q9HAZ2 1276 aa9.21□□□□□ -0.94
TRAPPC11-209ENST00000512476 TICAM2Q86XR7 235 aa9.2□□□□□ -0.94
TRAPPC11-209ENST00000512476 SMARCA5O60264 1052 aaPredicted RBP9.19□□□□□ -0.94
TRAPPC11-209ENST00000512476 PLEKHG3A1L390 1219 aa9.18□□□□□ -0.94
TRAPPC11-209ENST00000512476 TESPA1A2RU30 521 aaPredicted RBP9.18□□□□□ -0.94
TRAPPC11-209ENST00000512476 HOXD11P31277 338 aaPredicted RBP9.18□□□□□ -0.94
TRAPPC11-209ENST00000512476 PSMD1Q99460 953 aa9.18□□□□□ -0.94
TRAPPC11-209ENST00000512476 FGD1P98174 961 aa9.17□□□□□ -0.94
TRAPPC11-209ENST00000512476 PKNOX2Q96KN3 472 aa9.16□□□□□ -0.94
TRAPPC11-209ENST00000512476 A6NJR5 290 aa9.15□□□□□ -0.94
TRAPPC11-209ENST00000512476 CCDC27Q2M243 656 aa9.15□□□□□ -0.94
TRAPPC11-209ENST00000512476 CADPSQ9ULU8 1353 aa9.15□□□□□ -0.94
TRAPPC11-209ENST00000512476 STK25O00506 426 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms