RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 ITGAEP38570 1179 aa26.28■■□□□ 1.8
CCHCR1-228ENST00000509552 CUL7Q14999 1698 aa26.28■■□□□ 1.8
CCHCR1-228ENST00000509552 MIER1Q8N108 512 aa26.27■■□□□ 1.8
CCHCR1-228ENST00000509552 LAMC3Q9Y6N6 1575 aa26.25■■□□□ 1.79
CCHCR1-228ENST00000509552 EFCAB5A4FU69 1503 aa26.23■■□□□ 1.79
CCHCR1-228ENST00000509552 GTF3C3Q9Y5Q9 886 aa26.23■■□□□ 1.79
CCHCR1-228ENST00000509552 CFAP43Q8NDM7 1665 aa26.23■■□□□ 1.79
CCHCR1-228ENST00000509552 P3H3Q8IVL6 736 aa26.22■■□□□ 1.79
CCHCR1-228ENST00000509552 PCF11O94913 1555 aaKnown RBP26.22■■□□□ 1.79
CCHCR1-228ENST00000509552 PELP1Q8IZL8 1130 aaKnown RBP26.2■■□□□ 1.78
CCHCR1-228ENST00000509552 FHOD3Q2V2M9 1422 aa26.18■■□□□ 1.78
CCHCR1-228ENST00000509552 PHLDB1Q86UU1 1377 aa26.17■■□□□ 1.78
CCHCR1-228ENST00000509552 RAB3GAP2Q9H2M9 1393 aa26.17■■□□□ 1.78
CCHCR1-228ENST00000509552 ATP1B4Q9UN42 357 aaPredicted RBP26.17■■□□□ 1.78
CCHCR1-228ENST00000509552 FYCO1Q9BQS8 1478 aa26.17■■□□□ 1.78
CCHCR1-228ENST00000509552 YTHDC1Q96MU7 727 aaKnown RBP26.16■■□□□ 1.78
CCHCR1-228ENST00000509552 CTTNBP2Q8WZ74 1663 aa26.16■■□□□ 1.78
CCHCR1-228ENST00000509552 URB2Q14146 1524 aaKnown RBP26.15■■□□□ 1.78
CCHCR1-228ENST00000509552 AQRO60306 1485 aaKnown RBP eCLIP26.14■■□□□ 1.772e-10■■■■■ 47.9
CCHCR1-228ENST00000509552 CASKIN1Q8WXD9 1431 aa26.13■■□□□ 1.77
CCHCR1-228ENST00000509552 SETD5Q9C0A6 1442 aa26.13■■□□□ 1.77
CCHCR1-228ENST00000509552 WDR97A6NE52 1622 aa26.13■■□□□ 1.77
CCHCR1-228ENST00000509552 FAM50AQ14320 339 aaKnown RBP26.1■■□□□ 1.77
CCHCR1-228ENST00000509552 PDS5BQ9NTI5 1447 aa26.1■■□□□ 1.77
CCHCR1-228ENST00000509552 FMN1Q68DA7 1419 aa26.08■■□□□ 1.77
CCHCR1-228ENST00000509552 ABCA5Q8WWZ7 1642 aa26.05■■□□□ 1.76
CCHCR1-228ENST00000509552 TDRD9Q8NDG6 1382 aaKnown RBP26.03■■□□□ 1.76
CCHCR1-228ENST00000509552 GAPVD1Q14C86 1478 aa26.02■■□□□ 1.76
CCHCR1-228ENST00000509552 MAPKBP1O60336 1514 aa26.02■■□□□ 1.76
CCHCR1-228ENST00000509552 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26■■□□□ 1.75
CCHCR1-228ENST00000509552 SNAPC4Q5SXM2 1469 aa25.95■■□□□ 1.75
CCHCR1-228ENST00000509552 SAMD9Q5K651 1589 aa25.94■■□□□ 1.74
CCHCR1-228ENST00000509552 KIF21AQ7Z4S6 1674 aa25.91■■□□□ 1.74
CCHCR1-228ENST00000509552 MTUS2Q5JR59 1369 aa25.9■■□□□ 1.74
CCHCR1-228ENST00000509552 FGD6Q6ZV73 1430 aa25.88■■□□□ 1.73
CCHCR1-228ENST00000509552 DNAJC5BQ9UF47 199 aa25.85■■□□□ 1.73
CCHCR1-228ENST00000509552 TARBP1Q13395 1621 aaKnown RBP25.84■■□□□ 1.73
CCHCR1-228ENST00000509552 TIMELESSQ9UNS1 1208 aa25.84■■□□□ 1.73
CCHCR1-228ENST00000509552 THOC2Q8NI27 1593 aaKnown RBP25.84■■□□□ 1.73
CCHCR1-228ENST00000509552 GRIN2BQ13224 1484 aa25.83■■□□□ 1.72
CCHCR1-228ENST00000509552 SIN3AQ96ST3 1273 aa25.8■■□□□ 1.72
CCHCR1-228ENST00000509552 LRRIQ1Q96JM4 1722 aa25.77■■□□□ 1.72
CCHCR1-228ENST00000509552 NCOA2Q15596 1464 aa25.76■■□□□ 1.71
CCHCR1-228ENST00000509552 EHBP1L1Q8N3D4 1523 aa25.75■■□□□ 1.71
CCHCR1-228ENST00000509552 SUPT6HQ7KZ85 1726 aaKnown RBP25.74■■□□□ 1.71
CCHCR1-228ENST00000509552 MYOM3Q5VTT5 1437 aa25.74■■□□□ 1.71
CCHCR1-228ENST00000509552 PBRM1Q86U86 1689 aa25.73■■□□□ 1.71
CCHCR1-228ENST00000509552 CCDC18Q5T9S5 1454 aa25.71■■□□□ 1.71
CCHCR1-228ENST00000509552 HFM1A2PYH4 1435 aa25.71■■□□□ 1.71
CCHCR1-228ENST00000509552 MRC2Q9UBG0 1479 aa25.67■■□□□ 1.7
CCHCR1-228ENST00000509552 PTPRKQ15262 1439 aa25.66■■□□□ 1.7
CCHCR1-228ENST00000509552 IQGAP2Q13576 1575 aa25.66■■□□□ 1.7
CCHCR1-228ENST00000509552 PTPN23Q9H3S7 1636 aa25.65■■□□□ 1.7
CCHCR1-228ENST00000509552 UACAQ9BZF9 1416 aa25.65■■□□□ 1.7
CCHCR1-228ENST00000509552 ADAMTS12P58397 1594 aa25.65■■□□□ 1.7
CCHCR1-228ENST00000509552 UGGT2Q9NYU1 1516 aa25.64■■□□□ 1.7
CCHCR1-228ENST00000509552 HECW1Q76N89 1606 aa25.64■■□□□ 1.7
CCHCR1-228ENST00000509552 PPP1R15AO75807 674 aaPredicted RBP25.64■■□□□ 1.69
CCHCR1-228ENST00000509552 ARHGEF11O15085 1522 aa25.62■■□□□ 1.69
CCHCR1-228ENST00000509552 NAIPQ13075 1403 aa25.6■■□□□ 1.69
CCHCR1-228ENST00000509552 MAGI3Q5TCQ9 1506 aa25.58■■□□□ 1.69
CCHCR1-228ENST00000509552 TONSLQ96HA7 1378 aa25.58■■□□□ 1.69
CCHCR1-228ENST00000509552 EPRSP07814 1512 aaKnown RBP25.55■■□□□ 1.68
CCHCR1-228ENST00000509552 DDX10Q13206 875 aaKnown RBP25.54■■□□□ 1.68
CCHCR1-228ENST00000509552 TCOF1Q13428 1488 aaKnown RBP25.54■■□□□ 1.68
CCHCR1-228ENST00000509552 IFT140Q96RY7 1462 aa25.53■■□□□ 1.68
CCHCR1-228ENST00000509552 WDR62O43379 1518 aa25.49■■□□□ 1.67
CCHCR1-228ENST00000509552 MIA2Q96PC5 1412 aa25.47■■□□□ 1.67
CCHCR1-228ENST00000509552 CDK13Q14004 1512 aaKnown RBP25.46■■□□□ 1.67
CCHCR1-228ENST00000509552 ZNF608Q9ULD9 1512 aaPredicted RBP25.44■■□□□ 1.66
CCHCR1-228ENST00000509552 AKNAQ7Z591 1439 aa25.44■■□□□ 1.66
CCHCR1-228ENST00000509552 RRP7BPQ9NSQ0 103 aa25.43■■□□□ 1.66
CCHCR1-228ENST00000509552 GCC2Q8IWJ2 1684 aa25.43■■□□□ 1.66
CCHCR1-228ENST00000509552 CHIC2Q9UKJ5 165 aa25.42■■□□□ 1.66
CCHCR1-228ENST00000509552 KIAA0586Q9BVV6 1533 aa25.42■■□□□ 1.66
CCHCR1-228ENST00000509552 HIRIP3Q9BW71 556 aaPredicted RBP25.41■■□□□ 1.66
CCHCR1-228ENST00000509552 KCNH8Q96L42 1107 aa25.4■■□□□ 1.66
CCHCR1-228ENST00000509552 KIAA0556O60303 1618 aa25.37■■□□□ 1.65
CCHCR1-228ENST00000509552 ARID3CA6NKF2 412 aa25.37■■□□□ 1.65
CCHCR1-228ENST00000509552 TRIM52Q96A61 297 aa25.36■■□□□ 1.65
CCHCR1-228ENST00000509552 ANP32CO43423 234 aa25.35■■□□□ 1.65
CCHCR1-228ENST00000509552 DISP1Q96F81 1524 aa25.35■■□□□ 1.65
CCHCR1-228ENST00000509552 SUPT16HQ9Y5B9 1047 aaKnown RBP25.34■■□□□ 1.65
CCHCR1-228ENST00000509552 GRIN2AQ12879 1464 aa25.33■■□□□ 1.65
CCHCR1-228ENST00000509552 CCER2I3L3R5 266 aa25.32■■□□□ 1.64
CCHCR1-228ENST00000509552 EIF4G3O43432 1585 aaKnown RBP25.3■■□□□ 1.64
CCHCR1-228ENST00000509552 CDK11AQ9UQ88 783 aaPredicted RBP25.3■■□□□ 1.64
CCHCR1-228ENST00000509552 RAPGEF6Q8TEU7 1601 aa25.28■■□□□ 1.64
CCHCR1-228ENST00000509552 KDM5BQ9UGL1 1544 aa25.28■■□□□ 1.64
CCHCR1-228ENST00000509552 NUP153P49790 1475 aaKnown RBP25.28■■□□□ 1.64
CCHCR1-228ENST00000509552 KDM6BO15054 1643 aa25.27■■□□□ 1.64
CCHCR1-228ENST00000509552 MPHOSPH9Q99550 1183 aa25.26■■□□□ 1.63
CCHCR1-228ENST00000509552 ROCK1Q13464 1354 aa25.26■■□□□ 1.63
CCHCR1-228ENST00000509552 DENND4BO75064 1496 aaPredicted RBP25.25■■□□□ 1.63
CCHCR1-228ENST00000509552 DAPK1P53355 1430 aa25.24■■□□□ 1.63
CCHCR1-228ENST00000509552 ERCC6Q03468 1493 aa25.24■■□□□ 1.63
CCHCR1-228ENST00000509552 MAGI1Q96QZ7 1491 aaPredicted RBP25.23■■□□□ 1.63
CCHCR1-228ENST00000509552 DNMT1P26358 1616 aaKnown RBP25.21■■□□□ 1.63
CCHCR1-228ENST00000509552 CHMP7Q8WUX9 453 aaPredicted RBP25.2■■□□□ 1.62
CCHCR1-228ENST00000509552 ABCC5O15440 1437 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms