RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 NISCHQ9Y2I1 1504 aa37.51■■■■□ 3.6
CCHCR1-228ENST00000509552 CCDC180Q9P1Z9 1646 aa32.03■■■□□ 2.72
CCHCR1-228ENST00000509552 SHROOM4Q9ULL8 1493 aa31.72■■■□□ 2.67
CCHCR1-228ENST00000509552 ZCCHC6Q5VYS8 1495 aaKnown RBP31.71■■■□□ 2.67
CCHCR1-228ENST00000509552 SUPT5HO00267 1087 aaKnown RBP31.1■■■□□ 2.57
CCHCR1-228ENST00000509552 DCAF8L2P0C7V8 631 aa31■■■□□ 2.55
CCHCR1-228ENST00000509552 DCAF1Q9Y4B6 1507 aa30.88■■■□□ 2.53
CCHCR1-228ENST00000509552 CHIC1Q5VXU3 224 aa30.24■■■□□ 2.43
CCHCR1-228ENST00000509552 MYO15BQ96JP2 1530 aa30.06■■■□□ 2.4
CCHCR1-228ENST00000509552 ABCC9O60706 1549 aa29.91■■■□□ 2.38
CCHCR1-228ENST00000509552 SCRIBQ14160 1630 aa29.86■■■□□ 2.37
CCHCR1-228ENST00000509552 NACADO15069 1562 aa29.64■■■□□ 2.33
CCHCR1-228ENST00000509552 RSF1Q96T23 1441 aaPredicted RBP29.6■■■□□ 2.33
CCHCR1-228ENST00000509552 RB1CC1Q8TDY2 1594 aa29.33■■■□□ 2.29
CCHCR1-228ENST00000509552 LOC105371045A0A1W2PR82 267 aa29.25■■■□□ 2.27
CCHCR1-228ENST00000509552 CECR2Q9BXF3 1484 aa29.16■■■□□ 2.26
CCHCR1-228ENST00000509552 PCGF6Q9BYE7 350 aa29.15■■■□□ 2.26
CCHCR1-228ENST00000509552 HRCP23327 699 aa29.15■■■□□ 2.26
CCHCR1-228ENST00000509552 MROH2BQ7Z745 1585 aa29.09■■■□□ 2.25
CCHCR1-228ENST00000509552 TRIM41Q8WV44 630 aa29.08■■■□□ 2.25
CCHCR1-228ENST00000509552 WIZO95785 1651 aa28.92■■■□□ 2.22
CCHCR1-228ENST00000509552 BAZ1AQ9NRL2 1556 aaPredicted RBP28.86■■■□□ 2.21
CCHCR1-228ENST00000509552 TRIM26Q12899 539 aaPredicted RBP28.74■■■□□ 2.19
CCHCR1-228ENST00000509552 FAM9AQ8IZU1 332 aaPredicted RBP28.71■■■□□ 2.19
CCHCR1-228ENST00000509552 UNC13AQ9UPW8 1703 aa28.61■■■□□ 2.17
CCHCR1-228ENST00000509552 SMARCA4P51532 1647 aa28.59■■■□□ 2.17
CCHCR1-228ENST00000509552 TOP2AP11388 1531 aaKnown RBP28.56■■■□□ 2.16
CCHCR1-228ENST00000509552 EIF4G1Q04637 1599 aaKnown RBP28.52■■■□□ 2.16
CCHCR1-228ENST00000509552 PPARGC1BQ86YN6 1023 aaKnown RBP28.4■■■□□ 2.14
CCHCR1-228ENST00000509552 CCDC88BA6NC98 1476 aa28.38■■■□□ 2.13
CCHCR1-228ENST00000509552 EHMT2Q96KQ7 1210 aa28.37■■■□□ 2.13
CCHCR1-228ENST00000509552 SMARCA2P51531 1590 aa28.36■■■□□ 2.13
CCHCR1-228ENST00000509552 BICRAQ9NZM4 1560 aa28.27■■■□□ 2.12
CCHCR1-228ENST00000509552 PABPN1Q86U42 306 aaKnown RBP eCLIP28.23■■■□□ 2.11
CCHCR1-228ENST00000509552 ABCC8Q09428 1581 aa28.21■■■□□ 2.11
CCHCR1-228ENST00000509552 ZEB1P37275 1124 aaPredicted RBP28.17■■■□□ 2.1
CCHCR1-228ENST00000509552 PEG3Q9GZU2 1588 aa28.1■■■□□ 2.09
CCHCR1-228ENST00000509552 EEA1Q15075 1411 aa27.97■■■□□ 2.07
CCHCR1-228ENST00000509552 SOGA1O94964 1423 aa27.93■■■□□ 2.06
CCHCR1-228ENST00000509552 ATAD2BQ9ULI0 1458 aa27.87■■■□□ 2.05
CCHCR1-228ENST00000509552 CSRNP3Q8WYN3 585 aa27.85■■■□□ 2.05
CCHCR1-228ENST00000509552 WRNQ14191 1432 aaPredicted RBP eCLIP27.85■■■□□ 2.05
CCHCR1-228ENST00000509552 TNIKQ9UKE5 1360 aa27.84■■■□□ 2.05
CCHCR1-228ENST00000509552 CEP162Q5TB80 1403 aa27.82■■■□□ 2.04
CCHCR1-228ENST00000509552 BAZ1BQ9UIG0 1483 aaKnown RBP27.81■■■□□ 2.04
CCHCR1-228ENST00000509552 RUSC2Q8N2Y8 1516 aa27.76■■■□□ 2.03
CCHCR1-228ENST00000509552 UBTFP17480 764 aaKnown RBP27.7■■■□□ 2.03
CCHCR1-228ENST00000509552 GOLGA3Q08378 1498 aa27.7■■■□□ 2.03
CCHCR1-228ENST00000509552 SYNJ1O43426 1573 aa27.66■■■□□ 2.02
CCHCR1-228ENST00000509552 CEP164Q9UPV0 1460 aa27.57■■■□□ 2
CCHCR1-228ENST00000509552 KIF21BO75037 1637 aa27.53■■■□□ 2
CCHCR1-228ENST00000509552 CCER1Q8TC90 406 aaPredicted RBP27.51■■□□□ 1.99
CCHCR1-228ENST00000509552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.5■■□□□ 1.99
CCHCR1-228ENST00000509552 TTBK1Q5TCY1 1321 aaPredicted RBP27.46■■□□□ 1.99
CCHCR1-228ENST00000509552 TOP2BQ02880 1626 aa27.4■■□□□ 1.98
CCHCR1-228ENST00000509552 HMGXB3Q12766 1538 aa27.4■■□□□ 1.98
CCHCR1-228ENST00000509552 NCAPD3P42695 1498 aa27.39■■□□□ 1.98
CCHCR1-228ENST00000509552 CLIP1P30622 1438 aa27.35■■□□□ 1.97
CCHCR1-228ENST00000509552 BIVM-ERCC5R4GMW8 1640 aa27.32■■□□□ 1.96
CCHCR1-228ENST00000509552 RAPGEF2Q9Y4G8 1499 aa27.29■■□□□ 1.96
CCHCR1-228ENST00000509552 VPS8Q8N3P4 1428 aa27.23■■□□□ 1.95
CCHCR1-228ENST00000509552 APLP2Q06481 763 aa27.15■■□□□ 1.94
CCHCR1-228ENST00000509552 ERICH3Q5RHP9 1530 aa27.13■■□□□ 1.93
CCHCR1-228ENST00000509552 CFTRP13569 1480 aa27.12■■□□□ 1.93
CCHCR1-228ENST00000509552 CUX1P39880 1505 aa27.11■■□□□ 1.93
CCHCR1-228ENST00000509552 PRXQ9BXM0 1461 aa27.09■■□□□ 1.93
CCHCR1-228ENST00000509552 RANGAP1P46060 587 aaPredicted RBP27.05■■□□□ 1.92
CCHCR1-228ENST00000509552 KIF27Q86VH2 1401 aa27.04■■□□□ 1.92
CCHCR1-228ENST00000509552 HNRNPUL2Q1KMD3 747 aaKnown RBP26.96■■□□□ 1.91
CCHCR1-228ENST00000509552 PRDM2Q13029 1718 aa26.94■■□□□ 1.9
CCHCR1-228ENST00000509552 DIEXFQ68CQ4 756 aaKnown RBP26.89■■□□□ 1.9
CCHCR1-228ENST00000509552 ARAP1Q96P48 1450 aa26.88■■□□□ 1.89
CCHCR1-228ENST00000509552 CADPSQ9ULU8 1353 aa26.84■■□□□ 1.89
CCHCR1-228ENST00000509552 ZNF316A6NFI3 1004 aaPredicted RBP26.76■■□□□ 1.87
CCHCR1-228ENST00000509552 CUX2O14529 1486 aa26.74■■□□□ 1.87
CCHCR1-228ENST00000509552 IGF1RP08069 1367 aa26.69■■□□□ 1.86
CCHCR1-228ENST00000509552 CC2D2AQ9P2K1 1620 aa26.69■■□□□ 1.86
CCHCR1-228ENST00000509552 SCAF1Q9H7N4 1312 aaKnown RBP26.69■■□□□ 1.86
CCHCR1-228ENST00000509552 ARHGAP35Q9NRY4 1499 aa26.68■■□□□ 1.86
CCHCR1-228ENST00000509552 KANK4Q5T7N3 995 aaPredicted RBP26.67■■□□□ 1.86
CCHCR1-228ENST00000509552 FGD5Q6ZNL6 1462 aa26.66■■□□□ 1.86
CCHCR1-228ENST00000509552 CARMIL1Q5VZK9 1371 aa26.6■■□□□ 1.85
CCHCR1-228ENST00000509552 ACIN1Q9UKV3 1341 aaKnown RBP26.59■■□□□ 1.85
CCHCR1-228ENST00000509552 RRBP1Q9P2E9 1410 aaKnown RBP26.58■■□□□ 1.85
CCHCR1-228ENST00000509552 CLSPNQ9HAW4 1339 aa26.57■■□□□ 1.84
CCHCR1-228ENST00000509552 FANCD2Q9BXW9 1451 aa26.56■■□□□ 1.84
CCHCR1-228ENST00000509552 CENPBP07199 599 aaPredicted RBP26.56■■□□□ 1.84
CCHCR1-228ENST00000509552 NEUROD1Q13562 356 aa26.48■■□□□ 1.83
CCHCR1-228ENST00000509552 DHX57Q6P158 1386 aaKnown RBP26.48■■□□□ 1.83
CCHCR1-228ENST00000509552 CCNB3Q8WWL7 1395 aa26.47■■□□□ 1.83
CCHCR1-228ENST00000509552 DNMBPQ6XZF7 1577 aa26.46■■□□□ 1.83
CCHCR1-228ENST00000509552 MAP3K1Q13233 1512 aa26.45■■□□□ 1.82
CCHCR1-228ENST00000509552 TIAM1Q13009 1591 aa26.41■■□□□ 1.82
CCHCR1-228ENST00000509552 ABCA10Q8WWZ4 1543 aa26.39■■□□□ 1.81
CCHCR1-228ENST00000509552 TOPBP1Q92547 1522 aa26.38■■□□□ 1.81
CCHCR1-228ENST00000509552 FHAD1B1AJZ9 1412 aa26.37■■□□□ 1.81
CCHCR1-228ENST00000509552 POLA1P09884 1462 aaPredicted RBP26.35■■□□□ 1.81
CCHCR1-228ENST00000509552 RAD54L2Q9Y4B4 1467 aa26.35■■□□□ 1.81
CCHCR1-228ENST00000509552 NESP48681 1621 aa26.32■■□□□ 1.8
CCHCR1-228ENST00000509552 LRRC9Q6ZRR7 1453 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms