RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 CCDC136Q96JN2 1154 aa10.66□□□□□ -0.7
NEDD9-208ENST00000504387 BAZ1BQ9UIG0 1483 aaKnown RBP10.66□□□□□ -0.7
NEDD9-208ENST00000504387 EIF4G1Q04637 1599 aaKnown RBP10.65□□□□□ -0.7
NEDD9-208ENST00000504387 ATAD2BQ9ULI0 1458 aa10.65□□□□□ -0.7
NEDD9-208ENST00000504387 FAM9BQ8IZU0 186 aa10.63□□□□□ -0.71
NEDD9-208ENST00000504387 RAB3GAP2Q9H2M9 1393 aa10.63□□□□□ -0.71
NEDD9-208ENST00000504387 AEBP2Q6ZN18 517 aaPredicted RBP10.62□□□□□ -0.71
NEDD9-208ENST00000504387 ARID3CA6NKF2 412 aa10.61□□□□□ -0.71
NEDD9-208ENST00000504387 PPP1R15AO75807 674 aaPredicted RBP10.61□□□□□ -0.71
NEDD9-208ENST00000504387 PAK3O75914 559 aaPredicted RBP10.61□□□□□ -0.71
NEDD9-208ENST00000504387 DNAJC5BQ9UF47 199 aa10.61□□□□□ -0.71
NEDD9-208ENST00000504387 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.59□□□□□ -0.71
NEDD9-208ENST00000504387 SYNJ1O43426 1573 aa10.59□□□□□ -0.71
NEDD9-208ENST00000504387 POLR3GLQ9BT43 218 aa10.58□□□□□ -0.72
NEDD9-208ENST00000504387 KIF21BO75037 1637 aa10.58□□□□□ -0.72
NEDD9-208ENST00000504387 CCNB3Q8WWL7 1395 aa10.58□□□□□ -0.72
NEDD9-208ENST00000504387 CCDC184Q52MB2 194 aa10.58□□□□□ -0.72
NEDD9-208ENST00000504387 NPM2Q86SE8 214 aaKnown RBP10.57□□□□□ -0.72
NEDD9-208ENST00000504387 SALL2Q9Y467 1007 aaPredicted RBP10.57□□□□□ -0.72
NEDD9-208ENST00000504387 WDR97A6NE52 1622 aa10.57□□□□□ -0.72
NEDD9-208ENST00000504387 FANCIQ9NVI1 1328 aa10.54□□□□□ -0.72
NEDD9-208ENST00000504387 IL27Q8NEV9 243 aa10.54□□□□□ -0.72
NEDD9-208ENST00000504387 NCAPD3P42695 1498 aa10.52□□□□□ -0.73
NEDD9-208ENST00000504387 NOP58Q9Y2X3 529 aaKnown RBP10.52□□□□□ -0.73
NEDD9-208ENST00000504387 HMGXB3Q12766 1538 aa10.5□□□□□ -0.73
NEDD9-208ENST00000504387 CCER2I3L3R5 266 aa10.5□□□□□ -0.73
NEDD9-208ENST00000504387 RTL5Q5HYW3 569 aaPredicted RBP10.5□□□□□ -0.73
NEDD9-208ENST00000504387 ARAP1Q96P48 1450 aa10.49□□□□□ -0.73
NEDD9-208ENST00000504387 LAS1LQ9Y4W2 734 aaKnown RBP10.49□□□□□ -0.73
NEDD9-208ENST00000504387 TONSLQ96HA7 1378 aa10.49□□□□□ -0.73
NEDD9-208ENST00000504387 PPP4R2Q9NY27 417 aa10.49□□□□□ -0.73
NEDD9-208ENST00000504387 CHIC2Q9UKJ5 165 aa10.49□□□□□ -0.73
NEDD9-208ENST00000504387 MRS2Q9HD23 443 aa10.48□□□□□ -0.73
NEDD9-208ENST00000504387 CC2D2AQ9P2K1 1620 aa10.47□□□□□ -0.73
NEDD9-208ENST00000504387 KIF27Q86VH2 1401 aa10.46□□□□□ -0.73
NEDD9-208ENST00000504387 SETD5Q9C0A6 1442 aa10.46□□□□□ -0.73
NEDD9-208ENST00000504387 MAPKBP1O60336 1514 aa10.45□□□□□ -0.74
NEDD9-208ENST00000504387 ZBTB47Q9UFB7 747 aaPredicted RBP10.44□□□□□ -0.74
NEDD9-208ENST00000504387 EIF5BO60841 1220 aaKnown RBP10.44□□□□□ -0.74
NEDD9-208ENST00000504387 FOXD1Q16676 465 aa10.44□□□□□ -0.74
NEDD9-208ENST00000504387 RRBP1Q9P2E9 1410 aaKnown RBP10.43□□□□□ -0.74
NEDD9-208ENST00000504387 CUX2O14529 1486 aa10.43□□□□□ -0.74
NEDD9-208ENST00000504387 ANP32AP39687 249 aaKnown RBP10.43□□□□□ -0.74
NEDD9-208ENST00000504387 HSPA5P11021 654 aaKnown RBP10.42□□□□□ -0.74
NEDD9-208ENST00000504387 PHLDB1Q86UU1 1377 aa10.42□□□□□ -0.74
NEDD9-208ENST00000504387 RRP7BPQ9NSQ0 103 aa10.41□□□□□ -0.74
NEDD9-208ENST00000504387 ZNF326Q5BKZ1 582 aaKnown RBP10.4□□□□□ -0.74
NEDD9-208ENST00000504387 WASHC2AQ641Q2 1341 aa10.39□□□□□ -0.75
NEDD9-208ENST00000504387 SKAP1Q86WV1 359 aa10.39□□□□□ -0.75
NEDD9-208ENST00000504387 CARMIL1Q5VZK9 1371 aa10.38□□□□□ -0.75
NEDD9-208ENST00000504387 C11orf95C9JLR9 678 aaPredicted RBP10.38□□□□□ -0.75
NEDD9-208ENST00000504387 NEFMP07197 916 aa10.37□□□□□ -0.75
NEDD9-208ENST00000504387 AKNAQ7Z591 1439 aa10.36□□□□□ -0.75
NEDD9-208ENST00000504387 IPO9Q96P70 1041 aaKnown RBP10.35□□□□□ -0.75
NEDD9-208ENST00000504387 FHOD3Q2V2M9 1422 aa10.34□□□□□ -0.75
NEDD9-208ENST00000504387 SLC4A3P48751 1232 aa10.34□□□□□ -0.75
NEDD9-208ENST00000504387 ARHGAP35Q9NRY4 1499 aa10.34□□□□□ -0.75
NEDD9-208ENST00000504387 PRXQ9BXM0 1461 aa10.33□□□□□ -0.76
NEDD9-208ENST00000504387 CFTRP13569 1480 aa10.33□□□□□ -0.76
NEDD9-208ENST00000504387 MYT1LQ9UL68 1186 aa10.33□□□□□ -0.76
NEDD9-208ENST00000504387 IGF1RP08069 1367 aa10.33□□□□□ -0.76
NEDD9-208ENST00000504387 EIF4G2P78344 907 aaKnown RBP eCLIP10.33□□□□□ -0.76
NEDD9-208ENST00000504387 MTUS2Q5JR59 1369 aa10.32□□□□□ -0.76
NEDD9-208ENST00000504387 CUX1P39880 1505 aa10.32□□□□□ -0.76
NEDD9-208ENST00000504387 BRPF3Q9ULD4 1205 aa10.32□□□□□ -0.76
NEDD9-208ENST00000504387 PRKRIP1Q9H875 184 aaPredicted RBP10.32□□□□□ -0.76
NEDD9-208ENST00000504387 TOP2BQ02880 1626 aa10.3□□□□□ -0.76
NEDD9-208ENST00000504387 PRDM2Q13029 1718 aa10.29□□□□□ -0.76
NEDD9-208ENST00000504387 ARXQ96QS3 562 aa10.28□□□□□ -0.76
NEDD9-208ENST00000504387 L3MBTL2Q969R5 705 aa10.28□□□□□ -0.76
NEDD9-208ENST00000504387 ZNF777Q9ULD5 760 aaPredicted RBP10.28□□□□□ -0.76
NEDD9-208ENST00000504387 TDRD9Q8NDG6 1382 aaKnown RBP10.26□□□□□ -0.77
NEDD9-208ENST00000504387 EXOC6Q8TAG9 804 aa10.26□□□□□ -0.77
NEDD9-208ENST00000504387 TIMELESSQ9UNS1 1208 aa10.26□□□□□ -0.77
NEDD9-208ENST00000504387 BIVM-ERCC5R4GMW8 1640 aa10.26□□□□□ -0.77
NEDD9-208ENST00000504387 RAD54L2Q9Y4B4 1467 aa10.26□□□□□ -0.77
NEDD9-208ENST00000504387 DNAJC5Q9H3Z4 198 aa10.26□□□□□ -0.77
NEDD9-208ENST00000504387 CADPSQ9ULU8 1353 aa10.25□□□□□ -0.77
NEDD9-208ENST00000504387 PLIN1O60240 522 aa10.25□□□□□ -0.77
NEDD9-208ENST00000504387 FBLN2P98095 1184 aa10.25□□□□□ -0.77
NEDD9-208ENST00000504387 ZBED9Q6R2W3 1325 aa10.25□□□□□ -0.77
NEDD9-208ENST00000504387 LRRC9Q6ZRR7 1453 aa10.24□□□□□ -0.77
NEDD9-208ENST00000504387 TMC1Q8TDI8 760 aa10.23□□□□□ -0.77
NEDD9-208ENST00000504387 AQRO60306 1485 aaKnown RBP eCLIP10.23□□□□□ -0.773e-8■■■□□ 17.6
NEDD9-208ENST00000504387 FGD5Q6ZNL6 1462 aa10.23□□□□□ -0.77
NEDD9-208ENST00000504387 ERICH6BQ5W0A0 696 aa10.22□□□□□ -0.77
NEDD9-208ENST00000504387 ERICH3Q5RHP9 1530 aa10.22□□□□□ -0.77
NEDD9-208ENST00000504387 NBPF8Q3BBV2 869 aa10.22□□□□□ -0.77
NEDD9-208ENST00000504387 NUDCQ9Y266 331 aa10.22□□□□□ -0.77
NEDD9-208ENST00000504387 PDE4AP27815 886 aa10.21□□□□□ -0.77
NEDD9-208ENST00000504387 NESP48681 1621 aa10.21□□□□□ -0.78
NEDD9-208ENST00000504387 CCDC18Q5T9S5 1454 aa10.21□□□□□ -0.78
NEDD9-208ENST00000504387 FHAD1B1AJZ9 1412 aa10.21□□□□□ -0.78
NEDD9-208ENST00000504387 DAXXQ9UER7 740 aaPredicted RBP10.2□□□□□ -0.78
NEDD9-208ENST00000504387 PTPRKQ15262 1439 aa10.2□□□□□ -0.78
NEDD9-208ENST00000504387 KIF7Q2M1P5 1343 aa10.2□□□□□ -0.78
NEDD9-208ENST00000504387 TIAM1Q13009 1591 aa10.18□□□□□ -0.78
NEDD9-208ENST00000504387 KDM2AQ9Y2K7 1162 aa10.18□□□□□ -0.78
NEDD9-208ENST00000504387 CCDC7Q96M83 1385 aa10.18□□□□□ -0.78
NEDD9-208ENST00000504387 MPHOSPH9Q99550 1183 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms