RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 NISCHQ9Y2I1 1504 aa14.15□□□□□ -0.14
NEDD9-208ENST00000504387 SHROOM4Q9ULL8 1493 aa13.05□□□□□ -0.32
NEDD9-208ENST00000504387 SUPT5HO00267 1087 aaKnown RBP13.02□□□□□ -0.32
NEDD9-208ENST00000504387 PPARGC1BQ86YN6 1023 aaKnown RBP12.93□□□□□ -0.34
NEDD9-208ENST00000504387 PCGF6Q9BYE7 350 aa12.87□□□□□ -0.35
NEDD9-208ENST00000504387 DCAF8L2P0C7V8 631 aa12.85□□□□□ -0.35
NEDD9-208ENST00000504387 HRCP23327 699 aa12.82□□□□□ -0.36
NEDD9-208ENST00000504387 MYO15BQ96JP2 1530 aa12.5□□□□□ -0.41
NEDD9-208ENST00000504387 LOC105371045A0A1W2PR82 267 aa12.48□□□□□ -0.41
NEDD9-208ENST00000504387 CHIC1Q5VXU3 224 aa12.48□□□□□ -0.41
NEDD9-208ENST00000504387 EHMT2Q96KQ7 1210 aa12.39□□□□□ -0.43
NEDD9-208ENST00000504387 SCAF1Q9H7N4 1312 aaKnown RBP12.27□□□□□ -0.45
NEDD9-208ENST00000504387 CCDC180Q9P1Z9 1646 aa12.25□□□□□ -0.45
NEDD9-208ENST00000504387 FAM9AQ8IZU1 332 aaPredicted RBP12.16□□□□□ -0.46
NEDD9-208ENST00000504387 TRIM26Q12899 539 aaPredicted RBP12.16□□□□□ -0.46
NEDD9-208ENST00000504387 PELP1Q8IZL8 1130 aaKnown RBP12.15□□□□□ -0.46
NEDD9-208ENST00000504387 TTBK1Q5TCY1 1321 aaPredicted RBP12.02□□□□□ -0.49
NEDD9-208ENST00000504387 NEUROD1Q13562 356 aa11.97□□□□□ -0.49
NEDD9-208ENST00000504387 GTF3C3Q9Y5Q9 886 aa11.94□□□□□ -0.5
NEDD9-208ENST00000504387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.94□□□□□ -0.5
NEDD9-208ENST00000504387 DCAF1Q9Y4B6 1507 aa11.93□□□□□ -0.5
NEDD9-208ENST00000504387 ZEB1P37275 1124 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-208ENST00000504387 ZCCHC6Q5VYS8 1495 aaKnown RBP11.9□□□□□ -0.5
NEDD9-208ENST00000504387 YTHDC1Q96MU7 727 aaKnown RBP11.9□□□□□ -0.5
NEDD9-208ENST00000504387 ACIN1Q9UKV3 1341 aaKnown RBP11.87□□□□□ -0.51
NEDD9-208ENST00000504387 CCER1Q8TC90 406 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-208ENST00000504387 TRIM41Q8WV44 630 aa11.84□□□□□ -0.51
NEDD9-208ENST00000504387 DIEXFQ68CQ4 756 aaKnown RBP11.77□□□□□ -0.52
NEDD9-208ENST00000504387 CENPBP07199 599 aaPredicted RBP11.73□□□□□ -0.53
NEDD9-208ENST00000504387 MYT1Q01538 1121 aa11.57□□□□□ -0.56
NEDD9-208ENST00000504387 ABCC9O60706 1549 aa11.54□□□□□ -0.56
NEDD9-208ENST00000504387 MIER1Q8N108 512 aa11.51□□□□□ -0.57
NEDD9-208ENST00000504387 RANGAP1P46060 587 aaPredicted RBP11.5□□□□□ -0.57
NEDD9-208ENST00000504387 SCRIBQ14160 1630 aa11.49□□□□□ -0.57
NEDD9-208ENST00000504387 HNRNPUL2Q1KMD3 747 aaKnown RBP11.47□□□□□ -0.57
NEDD9-208ENST00000504387 ZNF316A6NFI3 1004 aaPredicted RBP11.44□□□□□ -0.58
NEDD9-208ENST00000504387 RSF1Q96T23 1441 aaPredicted RBP11.4□□□□□ -0.58
NEDD9-208ENST00000504387 UBTFP17480 764 aaKnown RBP11.38□□□□□ -0.59
NEDD9-208ENST00000504387 NACADO15069 1562 aa11.37□□□□□ -0.59
NEDD9-208ENST00000504387 BCANQ96GW7 911 aa11.36□□□□□ -0.59
NEDD9-208ENST00000504387 RB1CC1Q8TDY2 1594 aa11.3□□□□□ -0.6
NEDD9-208ENST00000504387 CECR2Q9BXF3 1484 aa11.29□□□□□ -0.6
NEDD9-208ENST00000504387 PABPN1Q86U42 306 aaKnown RBP eCLIP11.26□□□□□ -0.61
NEDD9-208ENST00000504387 SUPT16HQ9Y5B9 1047 aaKnown RBP11.24□□□□□ -0.61
NEDD9-208ENST00000504387 BCL11AQ9H165 835 aa11.24□□□□□ -0.61
NEDD9-208ENST00000504387 CSRNP3Q8WYN3 585 aa11.2□□□□□ -0.62
NEDD9-208ENST00000504387 TSHZ2Q9NRE2 1034 aa11.2□□□□□ -0.62
NEDD9-208ENST00000504387 KCNH8Q96L42 1107 aa11.18□□□□□ -0.62
NEDD9-208ENST00000504387 UNC13AQ9UPW8 1703 aa11.17□□□□□ -0.62
NEDD9-208ENST00000504387 ANP32EQ9BTT0 268 aa11.16□□□□□ -0.62
NEDD9-208ENST00000504387 APLP2Q06481 763 aa11.16□□□□□ -0.62
NEDD9-208ENST00000504387 MROH2BQ7Z745 1585 aa11.15□□□□□ -0.62
NEDD9-208ENST00000504387 ITGAEP38570 1179 aa11.14□□□□□ -0.63
NEDD9-208ENST00000504387 CEP162Q5TB80 1403 aa11.12□□□□□ -0.63
NEDD9-208ENST00000504387 FKBP8Q14318 412 aa11.1□□□□□ -0.63
NEDD9-208ENST00000504387 WIZO95785 1651 aa11.08□□□□□ -0.64
NEDD9-208ENST00000504387 SOGA1O94964 1423 aa11.08□□□□□ -0.64
NEDD9-208ENST00000504387 ABCC8Q09428 1581 aa11.06□□□□□ -0.64
NEDD9-208ENST00000504387 HIRIP3Q9BW71 556 aaPredicted RBP11.05□□□□□ -0.64
NEDD9-208ENST00000504387 CCDC88BA6NC98 1476 aa11.04□□□□□ -0.64
NEDD9-208ENST00000504387 RUSC2Q8N2Y8 1516 aa11.02□□□□□ -0.64
NEDD9-208ENST00000504387 TRIM52Q96A61 297 aa11.02□□□□□ -0.65
NEDD9-208ENST00000504387 BICRAQ9NZM4 1560 aa11.01□□□□□ -0.65
NEDD9-208ENST00000504387 IRX6P78412 446 aaPredicted RBP10.99□□□□□ -0.65
NEDD9-208ENST00000504387 DDX10Q13206 875 aaKnown RBP10.98□□□□□ -0.65
NEDD9-208ENST00000504387 ATP1B4Q9UN42 357 aaPredicted RBP10.98□□□□□ -0.65
NEDD9-208ENST00000504387 RBM19Q9Y4C8 960 aaKnown RBP10.96□□□□□ -0.65
NEDD9-208ENST00000504387 NEFLP07196 543 aa10.94□□□□□ -0.66
NEDD9-208ENST00000504387 TNIKQ9UKE5 1360 aa10.92□□□□□ -0.66
NEDD9-208ENST00000504387 ERICH6Q7L0X2 663 aa10.92□□□□□ -0.66
NEDD9-208ENST00000504387 WRNQ14191 1432 aaPredicted RBP eCLIP10.91□□□□□ -0.66
NEDD9-208ENST00000504387 BAZ1AQ9NRL2 1556 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-208ENST00000504387 MSH5O43196 834 aa10.87□□□□□ -0.67
NEDD9-208ENST00000504387 SMARCA4P51532 1647 aa10.86□□□□□ -0.67
NEDD9-208ENST00000504387 KANK4Q5T7N3 995 aaPredicted RBP10.86□□□□□ -0.67
NEDD9-208ENST00000504387 CNGB1Q14028 1251 aaPredicted RBP10.84□□□□□ -0.67
NEDD9-208ENST00000504387 SIN3AQ96ST3 1273 aa10.84□□□□□ -0.67
NEDD9-208ENST00000504387 CLIP1P30622 1438 aa10.84□□□□□ -0.67
NEDD9-208ENST00000504387 DHX57Q6P158 1386 aaKnown RBP10.82□□□□□ -0.68
NEDD9-208ENST00000504387 SENP3-EIF4A1A0A087X0R7 540 aa10.81□□□□□ -0.68
NEDD9-208ENST00000504387 CLSPNQ9HAW4 1339 aa10.81□□□□□ -0.68
NEDD9-208ENST00000504387 NBR1Q14596 966 aa10.8□□□□□ -0.68
NEDD9-208ENST00000504387 P3H3Q8IVL6 736 aa10.8□□□□□ -0.68
NEDD9-208ENST00000504387 GOLGA3Q08378 1498 aa10.78□□□□□ -0.68
NEDD9-208ENST00000504387 FAM50AQ14320 339 aaKnown RBP10.75□□□□□ -0.69
NEDD9-208ENST00000504387 HNRNPUQ00839 825 aaKnown RBP eCLIP10.74□□□□□ -0.69
NEDD9-208ENST00000504387 TOP2AP11388 1531 aaKnown RBP10.74□□□□□ -0.69
NEDD9-208ENST00000504387 ANP32CO43423 234 aa10.73□□□□□ -0.69
NEDD9-208ENST00000504387 CDK11AQ9UQ88 783 aaPredicted RBP10.73□□□□□ -0.69
NEDD9-208ENST00000504387 SMARCA2P51531 1590 aa10.72□□□□□ -0.69
NEDD9-208ENST00000504387 PEG3Q9GZU2 1588 aa10.72□□□□□ -0.69
NEDD9-208ENST00000504387 VPS8Q8N3P4 1428 aa10.71□□□□□ -0.69
NEDD9-208ENST00000504387 DEKP35659 375 aaKnown RBP10.7□□□□□ -0.7
NEDD9-208ENST00000504387 RTN4Q9NQC3 1192 aaKnown RBP10.7□□□□□ -0.7
NEDD9-208ENST00000504387 PRKCSHP14314 528 aaPredicted RBP10.69□□□□□ -0.7
NEDD9-208ENST00000504387 RAPGEF2Q9Y4G8 1499 aa10.69□□□□□ -0.7
NEDD9-208ENST00000504387 B4GALNT3Q6L9W6 998 aa10.69□□□□□ -0.7
NEDD9-208ENST00000504387 ANO8Q9HCE9 1232 aaPredicted RBP10.67□□□□□ -0.7
NEDD9-208ENST00000504387 EEA1Q15075 1411 aa10.67□□□□□ -0.7
NEDD9-208ENST00000504387 CEP164Q9UPV0 1460 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms