RNA–Protein interactions for RNA: ENST00000495172.1

GARNL3-219, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-219ENST00000495172 CUX1P39880 1505 aa17.3■□□□□ 0.36
GARNL3-219ENST00000495172 SOCS7O14512 581 aa17.28■□□□□ 0.36
GARNL3-219ENST00000495172 MAPKBP1O60336 1514 aa17.26■□□□□ 0.35
GARNL3-219ENST00000495172 NUP160Q12769 1436 aa17.26■□□□□ 0.35
GARNL3-219ENST00000495172 PRG4Q92954 1404 aaPredicted RBP17.25■□□□□ 0.35
GARNL3-219ENST00000495172 ADCY10Q96PN6 1610 aa17.24■□□□□ 0.35
GARNL3-219ENST00000495172 ABCA5Q8WWZ7 1642 aa17.23■□□□□ 0.35
GARNL3-219ENST00000495172 NPM1P06748 294 aaKnown RBP eCLIP17.22■□□□□ 0.35
GARNL3-219ENST00000495172 PHF23Q9BUL5 403 aaPredicted RBP17.2■□□□□ 0.34
GARNL3-219ENST00000495172 ADAMTS12P58397 1594 aa17.19■□□□□ 0.34
GARNL3-219ENST00000495172 COL17A1Q9UMD9 1497 aaPredicted RBP17.18■□□□□ 0.34
GARNL3-219ENST00000495172 PPRC1Q5VV67 1664 aaKnown RBP17.18■□□□□ 0.34
GARNL3-219ENST00000495172 DISP3Q9P2K9 1392 aa17.16■□□□□ 0.34
GARNL3-219ENST00000495172 SENP3Q9H4L4 574 aaPredicted RBP17.14■□□□□ 0.33
GARNL3-219ENST00000495172 JPH4Q96JJ6 628 aa17.11■□□□□ 0.33
GARNL3-219ENST00000495172 ABCA10Q8WWZ4 1543 aa17.11■□□□□ 0.33
GARNL3-219ENST00000495172 FHAD1B1AJZ9 1412 aa17.02■□□□□ 0.31
GARNL3-219ENST00000495172 TTBK1Q5TCY1 1321 aaPredicted RBP17.01■□□□□ 0.31
GARNL3-219ENST00000495172 RUSC2Q8N2Y8 1516 aa16.98■□□□□ 0.31
GARNL3-219ENST00000495172 TOP2BQ02880 1626 aa16.96■□□□□ 0.31
GARNL3-219ENST00000495172 ASXL2Q76L83 1435 aa16.94■□□□□ 0.3
GARNL3-219ENST00000495172 KIF21BO75037 1637 aa16.92■□□□□ 0.3
GARNL3-219ENST00000495172 GLI2P10070 1586 aa16.91■□□□□ 0.3
GARNL3-219ENST00000495172 SPATA31D1Q6ZQQ2 1576 aa16.9■□□□□ 0.3
GARNL3-219ENST00000495172 CUL7Q14999 1698 aa16.88■□□□□ 0.29
GARNL3-219ENST00000495172 CERKQ8TCT0 537 aa16.87■□□□□ 0.29
GARNL3-219ENST00000495172 MAP3K4Q9Y6R4 1608 aa16.87■□□□□ 0.29
GARNL3-219ENST00000495172 PTPRMP28827 1452 aa16.83■□□□□ 0.28
GARNL3-219ENST00000495172 HSPA2P54652 639 aa16.83■□□□□ 0.28
GARNL3-219ENST00000495172 ERICH3Q5RHP9 1530 aa16.83■□□□□ 0.28
GARNL3-219ENST00000495172 ABCC2Q92887 1545 aa16.83■□□□□ 0.28
GARNL3-219ENST00000495172 PLB1Q6P1J6 1458 aa16.82■□□□□ 0.28
GARNL3-219ENST00000495172 PCF11O94913 1555 aaKnown RBP16.81■□□□□ 0.28
GARNL3-219ENST00000495172 WRNQ14191 1432 aaPredicted RBP eCLIP16.81■□□□□ 0.28
GARNL3-219ENST00000495172 EPRSP07814 1512 aaKnown RBP16.8■□□□□ 0.28
GARNL3-219ENST00000495172 PTPRGP23470 1445 aa16.79■□□□□ 0.28
GARNL3-219ENST00000495172 TEX14Q8IWB6 1497 aa16.77■□□□□ 0.28
GARNL3-219ENST00000495172 ADAMTSL3P82987 1691 aa16.74■□□□□ 0.27
GARNL3-219ENST00000495172 PLPPR3Q6T4P5 718 aa16.71■□□□□ 0.27
GARNL3-219ENST00000495172 KIAA0586Q9BVV6 1533 aa16.7■□□□□ 0.26
GARNL3-219ENST00000495172 MADDQ8WXG6 1647 aa16.68■□□□□ 0.26
GARNL3-219ENST00000495172 ZCCHC11Q5TAX3 1644 aaKnown RBP16.66■□□□□ 0.26
GARNL3-219ENST00000495172 BIVM-ERCC5R4GMW8 1640 aa16.66■□□□□ 0.26
GARNL3-219ENST00000495172 TNIKQ9UKE5 1360 aa16.64■□□□□ 0.25
GARNL3-219ENST00000495172 UACAQ9BZF9 1416 aa16.62■□□□□ 0.25
GARNL3-219ENST00000495172 UHRF1BP1LA0JNW5 1464 aa16.61■□□□□ 0.25
GARNL3-219ENST00000495172 RIMS1Q86UR5 1692 aaKnown RBP16.6■□□□□ 0.25
GARNL3-219ENST00000495172 BCORL1Q5H9F3 1711 aa16.6■□□□□ 0.25
GARNL3-219ENST00000495172 KDM5BQ9UGL1 1544 aa16.6■□□□□ 0.25
GARNL3-219ENST00000495172 CD109Q6YHK3 1445 aa16.58■□□□□ 0.24
GARNL3-219ENST00000495172 KCNH8Q96L42 1107 aa16.57■□□□□ 0.24
GARNL3-219ENST00000495172 ARID4BQ4LE39 1312 aaPredicted RBP16.55■□□□□ 0.24
GARNL3-219ENST00000495172 MAGI3Q5TCQ9 1506 aa16.55■□□□□ 0.24
GARNL3-219ENST00000495172 WDR7Q9Y4E6 1490 aa16.54■□□□□ 0.24
GARNL3-219ENST00000495172 CARMIL2Q6F5E8 1435 aa16.52■□□□□ 0.23
GARNL3-219ENST00000495172 CFAP43Q8NDM7 1665 aa16.51■□□□□ 0.23
GARNL3-219ENST00000495172 RAPGEF3O95398 923 aa16.5■□□□□ 0.23
GARNL3-219ENST00000495172 DISP1Q96F81 1524 aa16.49■□□□□ 0.23
GARNL3-219ENST00000495172 IGF1RP08069 1367 aa16.46■□□□□ 0.23
GARNL3-219ENST00000495172 ARAP3Q8WWN8 1544 aa16.45■□□□□ 0.22
GARNL3-219ENST00000495172 STRCQ7RTU9 1775 aa16.43■□□□□ 0.22
GARNL3-219ENST00000495172 IQGAP2Q13576 1575 aa16.42■□□□□ 0.22
GARNL3-219ENST00000495172 SIGLEC1Q9BZZ2 1709 aa16.4■□□□□ 0.22
GARNL3-219ENST00000495172 FRMPD1Q5SYB0 1578 aa16.4■□□□□ 0.22
GARNL3-219ENST00000495172 ARID3CA6NKF2 412 aa16.37■□□□□ 0.21
GARNL3-219ENST00000495172 MLECQ14165 292 aa16.35■□□□□ 0.21
GARNL3-219ENST00000495172 YEATS2Q9ULM3 1422 aa16.33■□□□□ 0.2
GARNL3-219ENST00000495172 KIAA0556O60303 1618 aa16.32■□□□□ 0.2
GARNL3-219ENST00000495172 LTBP4Q8N2S1 1624 aa16.32■□□□□ 0.2
GARNL3-219ENST00000495172 CEBPAP49715 358 aaPredicted RBP16.31■□□□□ 0.2
GARNL3-219ENST00000495172 MED1Q15648 1581 aaPredicted RBP16.3■□□□□ 0.2
GARNL3-219ENST00000495172 CARMIL1Q5VZK9 1371 aa16.3■□□□□ 0.2
GARNL3-219ENST00000495172 ARHGEF40Q8TER5 1519 aa16.29■□□□□ 0.2
GARNL3-219ENST00000495172 FER1L4A9Z1Z3 1794 aa16.28■□□□□ 0.2
GARNL3-219ENST00000495172 PREX1Q8TCU6 1659 aa16.28■□□□□ 0.2
GARNL3-219ENST00000495172 UGGT2Q9NYU1 1516 aa16.24■□□□□ 0.19
GARNL3-219ENST00000495172 UBAP1LF5GYI3 381 aa16.24■□□□□ 0.19
GARNL3-219ENST00000495172 KIF27Q86VH2 1401 aa16.24■□□□□ 0.19
GARNL3-219ENST00000495172 ABCA8O94911 1581 aa16.23■□□□□ 0.19
GARNL3-219ENST00000495172 TTC37Q6PGP7 1564 aa16.23■□□□□ 0.19
GARNL3-219ENST00000495172 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
GARNL3-219ENST00000495172 ABCA9Q8IUA7 1624 aa16.2■□□□□ 0.18
GARNL3-219ENST00000495172 RICTORQ6R327 1708 aa16.19■□□□□ 0.18
GARNL3-219ENST00000495172 FANCAO15360 1455 aa16.18■□□□□ 0.18
GARNL3-219ENST00000495172 HSPA1LP34931 641 aa16.18■□□□□ 0.18
GARNL3-219ENST00000495172 PTPRTO14522 1441 aa16.17■□□□□ 0.18
GARNL3-219ENST00000495172 NEO1Q92859 1461 aa16.16■□□□□ 0.18
GARNL3-219ENST00000495172 POGZQ7Z3K3 1410 aa16.16■□□□□ 0.18
GARNL3-219ENST00000495172 PHLDB1Q86UU1 1377 aa16.15■□□□□ 0.18
GARNL3-219ENST00000495172 IQSEC2Q5JU85 1478 aa16.15■□□□□ 0.18
GARNL3-219ENST00000495172 ZNF335Q9H4Z2 1342 aaPredicted RBP16.13■□□□□ 0.17
GARNL3-219ENST00000495172 SCAF1Q9H7N4 1312 aaKnown RBP16.13■□□□□ 0.17
GARNL3-219ENST00000495172 UHRF1BP1Q6BDS2 1440 aa16.12■□□□□ 0.17
GARNL3-219ENST00000495172 AKNAQ7Z591 1439 aa16.12■□□□□ 0.17
GARNL3-219ENST00000495172 ATP10BO94823 1461 aa16.12■□□□□ 0.17
GARNL3-219ENST00000495172 DENND4BO75064 1496 aaPredicted RBP16.11■□□□□ 0.17
GARNL3-219ENST00000495172 ZFYVE16Q7Z3T8 1539 aa16.11■□□□□ 0.17
GARNL3-219ENST00000495172 SUPT5HO00267 1087 aaKnown RBP16.11■□□□□ 0.17
GARNL3-219ENST00000495172 ARHGEF12Q9NZN5 1544 aa16.1■□□□□ 0.17
GARNL3-219ENST00000495172 PIP4K2BP78356 416 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms