RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 DNAJC5Q9H3Z4 198 aa10.28□□□□□ -0.76
CUX1-208ENST00000485792 SNAPC4Q5SXM2 1469 aa10.27□□□□□ -0.77
CUX1-208ENST00000485792 ADAMTS12P58397 1594 aa10.26□□□□□ -0.77
CUX1-208ENST00000485792 SOGA1O94964 1423 aa10.26□□□□□ -0.77
CUX1-208ENST00000485792 TDRD9Q8NDG6 1382 aaKnown RBP10.26□□□□□ -0.77
CUX1-208ENST00000485792 CLASP1Q7Z460 1538 aa10.24□□□□□ -0.77
CUX1-208ENST00000485792 U3KPZ7 1027 aaPredicted RBP10.24□□□□□ -0.77
CUX1-208ENST00000485792 RIMBP3CA6NJZ7 1639 aa10.21□□□□□ -0.78
CUX1-208ENST00000485792 RIMBP3BA6NNM3 1639 aa10.21□□□□□ -0.78
CUX1-208ENST00000485792 RIMBP3Q9UFD9 1639 aa10.21□□□□□ -0.78
CUX1-208ENST00000485792 CEP170Q5SW79 1584 aa10.2□□□□□ -0.78
CUX1-208ENST00000485792 GAPVD1Q14C86 1478 aa10.19□□□□□ -0.78
CUX1-208ENST00000485792 GRIN2BQ13224 1484 aa10.18□□□□□ -0.78
CUX1-208ENST00000485792 MAGI1Q96QZ7 1491 aaPredicted RBP10.18□□□□□ -0.78
CUX1-208ENST00000485792 ERCC6L2Q5T890 1561 aa10.17□□□□□ -0.78
CUX1-208ENST00000485792 RUSC2Q8N2Y8 1516 aa10.16□□□□□ -0.78
CUX1-208ENST00000485792 ARHGEF11O15085 1522 aa10.15□□□□□ -0.78
CUX1-208ENST00000485792 ERICH3Q5RHP9 1530 aa10.15□□□□□ -0.78
CUX1-208ENST00000485792 SYNJ2O15056 1496 aa10.15□□□□□ -0.78
CUX1-208ENST00000485792 SHROOM2Q13796 1616 aa10.14□□□□□ -0.79
CUX1-208ENST00000485792 GRIN2AQ12879 1464 aa10.12□□□□□ -0.79
CUX1-208ENST00000485792 ARAP1Q96P48 1450 aa10.11□□□□□ -0.79
CUX1-208ENST00000485792 NUP160Q12769 1436 aa10.11□□□□□ -0.79
CUX1-208ENST00000485792 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.11□□□□□ -0.79
CUX1-208ENST00000485792 MYCNP04198 464 aaPredicted RBP10.11□□□□□ -0.79
CUX1-208ENST00000485792 HNRNPUL2Q1KMD3 747 aaKnown RBP10.11□□□□□ -0.79
CUX1-208ENST00000485792 CUL7Q14999 1698 aa10.09□□□□□ -0.79
CUX1-208ENST00000485792 APLP2Q06481 763 aa10.07□□□□□ -0.8
CUX1-208ENST00000485792 FHAD1B1AJZ9 1412 aa10.06□□□□□ -0.8
CUX1-208ENST00000485792 SAMD1Q6SPF0 538 aaPredicted RBP10.05□□□□□ -0.8
CUX1-208ENST00000485792 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
CUX1-208ENST00000485792 IGF1RP08069 1367 aa10.03□□□□□ -0.8
CUX1-208ENST00000485792 CAPN15O75808 1086 aa10.02□□□□□ -0.81
CUX1-208ENST00000485792 SPINK5Q9NQ38 1064 aaPredicted RBP10□□□□□ -0.81
CUX1-208ENST00000485792 KIF27Q86VH2 1401 aa9.99□□□□□ -0.81
CUX1-208ENST00000485792 CTTNBP2Q8WZ74 1663 aa9.98□□□□□ -0.81
CUX1-208ENST00000485792 PRXQ9BXM0 1461 aa9.96□□□□□ -0.82
CUX1-208ENST00000485792 FBLN2P98095 1184 aa9.95□□□□□ -0.82
CUX1-208ENST00000485792 ATXN8OSP0DMR3 200 aa9.94□□□□□ -0.82
CUX1-208ENST00000485792 ADCY10Q96PN6 1610 aa9.93□□□□□ -0.82
CUX1-208ENST00000485792 IQGAP2Q13576 1575 aa9.92□□□□□ -0.82
CUX1-208ENST00000485792 DISP1Q96F81 1524 aa9.92□□□□□ -0.82
CUX1-208ENST00000485792 CHMP7Q8WUX9 453 aaPredicted RBP9.92□□□□□ -0.82
CUX1-208ENST00000485792 ZNF219Q9P2Y4 722 aaPredicted RBP9.92□□□□□ -0.82
CUX1-208ENST00000485792 TRHP20396 242 aaPredicted RBP9.91□□□□□ -0.82
CUX1-208ENST00000485792 KIAA0586Q9BVV6 1533 aa9.91□□□□□ -0.82
CUX1-208ENST00000485792 RAPGEF2Q9Y4G8 1499 aa9.91□□□□□ -0.82
CUX1-208ENST00000485792 CARMIL1Q5VZK9 1371 aa9.9□□□□□ -0.82
CUX1-208ENST00000485792 KIAA0556O60303 1618 aa9.9□□□□□ -0.82
CUX1-208ENST00000485792 UGGT2Q9NYU1 1516 aa9.88□□□□□ -0.83
CUX1-208ENST00000485792 KIF13AQ9H1H9 1805 aa9.88□□□□□ -0.83
CUX1-208ENST00000485792 PRG4Q92954 1404 aaPredicted RBP9.88□□□□□ -0.83
CUX1-208ENST00000485792 KIF21BO75037 1637 aa9.87□□□□□ -0.83
CUX1-208ENST00000485792 SAMD9Q5K651 1589 aa9.86□□□□□ -0.83
CUX1-208ENST00000485792 TRIM41Q8WV44 630 aa9.86□□□□□ -0.83
CUX1-208ENST00000485792 DSG3P32926 999 aa9.84□□□□□ -0.83
CUX1-208ENST00000485792 ABCC2Q92887 1545 aa9.82□□□□□ -0.84
CUX1-208ENST00000485792 CYB5RLQ6IPT4 315 aa9.82□□□□□ -0.84
CUX1-208ENST00000485792 ATF5Q9Y2D1 282 aaPredicted RBP9.82□□□□□ -0.84
CUX1-208ENST00000485792 PPRC1Q5VV67 1664 aaKnown RBP9.8□□□□□ -0.84
CUX1-208ENST00000485792 ABCA8O94911 1581 aa9.8□□□□□ -0.84
CUX1-208ENST00000485792 DIP2BQ9P265 1576 aa9.79□□□□□ -0.84
CUX1-208ENST00000485792 LRRIQ1Q96JM4 1722 aa9.79□□□□□ -0.84
CUX1-208ENST00000485792 ABCB7O75027 752 aa9.78□□□□□ -0.84
CUX1-208ENST00000485792 JPH4Q96JJ6 628 aa9.78□□□□□ -0.84
CUX1-208ENST00000485792 ZCCHC11Q5TAX3 1644 aaKnown RBP9.78□□□□□ -0.84
CUX1-208ENST00000485792 MAPKBP1O60336 1514 aa9.77□□□□□ -0.84
CUX1-208ENST00000485792 PLB1Q6P1J6 1458 aa9.76□□□□□ -0.85
CUX1-208ENST00000485792 EEA1Q15075 1411 aa9.75□□□□□ -0.85
CUX1-208ENST00000485792 UHRF1BP1LA0JNW5 1464 aa9.73□□□□□ -0.85
CUX1-208ENST00000485792 KDM5BQ9UGL1 1544 aa9.72□□□□□ -0.85
CUX1-208ENST00000485792 TNIKQ9UKE5 1360 aa9.71□□□□□ -0.86
CUX1-208ENST00000485792 POLA2Q14181 598 aa9.7□□□□□ -0.86
CUX1-208ENST00000485792 FAM9AQ8IZU1 332 aaPredicted RBP9.7□□□□□ -0.86
CUX1-208ENST00000485792 GOLGA3Q08378 1498 aa9.69□□□□□ -0.86
CUX1-208ENST00000485792 FHOD3Q2V2M9 1422 aa9.69□□□□□ -0.86
CUX1-208ENST00000485792 RAPGEF6Q8TEU7 1601 aa9.69□□□□□ -0.86
CUX1-208ENST00000485792 ARHGAP35Q9NRY4 1499 aa9.69□□□□□ -0.86
CUX1-208ENST00000485792 MAP3K4Q9Y6R4 1608 aa9.69□□□□□ -0.86
CUX1-208ENST00000485792 ABCC10Q5T3U5 1492 aa9.68□□□□□ -0.86
CUX1-208ENST00000485792 NUP153P49790 1475 aaKnown RBP9.67□□□□□ -0.86
CUX1-208ENST00000485792 PTPRGP23470 1445 aa9.67□□□□□ -0.86
CUX1-208ENST00000485792 UACAQ9BZF9 1416 aa9.67□□□□□ -0.86
CUX1-208ENST00000485792 EFCAB5A4FU69 1503 aa9.66□□□□□ -0.86
CUX1-208ENST00000485792 PCF11O94913 1555 aaKnown RBP9.66□□□□□ -0.86
CUX1-208ENST00000485792 TSPOAP1O95153 1857 aa9.66□□□□□ -0.86
CUX1-208ENST00000485792 CARMIL2Q6F5E8 1435 aa9.65□□□□□ -0.87
CUX1-208ENST00000485792 ASXL2Q76L83 1435 aa9.65□□□□□ -0.87
CUX1-208ENST00000485792 GLI2P10070 1586 aa9.64□□□□□ -0.87
CUX1-208ENST00000485792 EPRSP07814 1512 aaKnown RBP9.63□□□□□ -0.87
CUX1-208ENST00000485792 CDK13Q14004 1512 aaKnown RBP9.63□□□□□ -0.87
CUX1-208ENST00000485792 MAGI3Q5TCQ9 1506 aa9.62□□□□□ -0.87
CUX1-208ENST00000485792 ATP10BO94823 1461 aa9.61□□□□□ -0.87
CUX1-208ENST00000485792 TTC37Q6PGP7 1564 aa9.61□□□□□ -0.87
CUX1-208ENST00000485792 COL17A1Q9UMD9 1497 aaPredicted RBP9.59□□□□□ -0.87
CUX1-208ENST00000485792 WDR7Q9Y4E6 1490 aa9.59□□□□□ -0.87
CUX1-208ENST00000485792 TTBK1Q5TCY1 1321 aaPredicted RBP9.59□□□□□ -0.87
CUX1-208ENST00000485792 KIF14Q15058 1648 aa9.59□□□□□ -0.87
CUX1-208ENST00000485792 ABCA9Q8IUA7 1624 aa9.59□□□□□ -0.87
CUX1-208ENST00000485792 FRMPD1Q5SYB0 1578 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms