RNA–Protein interactions for RNA: ENST00000482596.1

CHD6-209, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best)

Gene CHD6, Length 599 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-209ENST00000482596 RNF216Q9NWF9 866 aaPredicted RBP13.4□□□□□ -0.26
CHD6-209ENST00000482596 ABCC10Q5T3U5 1492 aa13.4□□□□□ -0.26
CHD6-209ENST00000482596 TDRD9Q8NDG6 1382 aaKnown RBP13.39□□□□□ -0.27
CHD6-209ENST00000482596 DIP2BQ9P265 1576 aa13.38□□□□□ -0.27
CHD6-209ENST00000482596 DNMBPQ6XZF7 1577 aa13.37□□□□□ -0.27
CHD6-209ENST00000482596 RAD54L2Q9Y4B4 1467 aa13.35□□□□□ -0.27
CHD6-209ENST00000482596 SPATA31D1Q6ZQQ2 1576 aa13.34□□□□□ -0.27
CHD6-209ENST00000482596 POLA1P09884 1462 aaPredicted RBP13.33□□□□□ -0.28
CHD6-209ENST00000482596 MAGI1Q96QZ7 1491 aaPredicted RBP13.32□□□□□ -0.28
CHD6-209ENST00000482596 KCNA4P22459 653 aa13.32□□□□□ -0.28
CHD6-209ENST00000482596 ABCC8Q09428 1581 aa13.31□□□□□ -0.28
CHD6-209ENST00000482596 NPM3O75607 178 aaKnown RBP13.29□□□□□ -0.28
CHD6-209ENST00000482596 CEP170Q5SW79 1584 aa13.28□□□□□ -0.28
CHD6-209ENST00000482596 DCAF8L1A6NGE4 600 aa13.25□□□□□ -0.29
CHD6-209ENST00000482596 MAPKBP1O60336 1514 aa13.23□□□□□ -0.29
CHD6-209ENST00000482596 GRIN2BQ13224 1484 aa13.22□□□□□ -0.29
CHD6-209ENST00000482596 SOGA1O94964 1423 aa13.22□□□□□ -0.29
CHD6-209ENST00000482596 WDR97A6NE52 1622 aa13.19□□□□□ -0.3
CHD6-209ENST00000482596 SHROOM2Q13796 1616 aa13.17□□□□□ -0.3
CHD6-209ENST00000482596 PBRM1Q86U86 1689 aa13.17□□□□□ -0.3
CHD6-209ENST00000482596 PPRC1Q5VV67 1664 aaKnown RBP13.16□□□□□ -0.3
CHD6-209ENST00000482596 COL17A1Q9UMD9 1497 aaPredicted RBP13.16□□□□□ -0.3
CHD6-209ENST00000482596 CERKQ8TCT0 537 aa13.15□□□□□ -0.3
CHD6-209ENST00000482596 TOP2BQ02880 1626 aa13.14□□□□□ -0.31
CHD6-209ENST00000482596 TOP2AP11388 1531 aaKnown RBP13.13□□□□□ -0.31
CHD6-209ENST00000482596 NPM1P06748 294 aaKnown RBP eCLIP13.13□□□□□ -0.31
CHD6-209ENST00000482596 ADCY10Q96PN6 1610 aa13.11□□□□□ -0.31
CHD6-209ENST00000482596 FGD5Q6ZNL6 1462 aa13.08□□□□□ -0.32
CHD6-209ENST00000482596 GRIN2AQ12879 1464 aa13.07□□□□□ -0.32
CHD6-209ENST00000482596 NUP160Q12769 1436 aa13.06□□□□□ -0.32
CHD6-209ENST00000482596 PRG4Q92954 1404 aaPredicted RBP13.05□□□□□ -0.32
CHD6-209ENST00000482596 CCDC88BA6NC98 1476 aa13.04□□□□□ -0.32
CHD6-209ENST00000482596 PCF11O94913 1555 aaKnown RBP13.03□□□□□ -0.32
CHD6-209ENST00000482596 PTPRMP28827 1452 aa12.97□□□□□ -0.33
CHD6-209ENST00000482596 KIF21BO75037 1637 aa12.97□□□□□ -0.33
CHD6-209ENST00000482596 ABCA5Q8WWZ7 1642 aa12.95□□□□□ -0.34
CHD6-209ENST00000482596 HSPA2P54652 639 aa12.94□□□□□ -0.34
CHD6-209ENST00000482596 GLI2P10070 1586 aa12.94□□□□□ -0.34
CHD6-209ENST00000482596 ADAMTS12P58397 1594 aa12.94□□□□□ -0.34
CHD6-209ENST00000482596 JPH4Q96JJ6 628 aa12.91□□□□□ -0.34
CHD6-209ENST00000482596 CUX1P39880 1505 aa12.9□□□□□ -0.34
CHD6-209ENST00000482596 ADAMTSL3P82987 1691 aa12.89□□□□□ -0.35
CHD6-209ENST00000482596 MAP3K4Q9Y6R4 1608 aa12.88□□□□□ -0.35
CHD6-209ENST00000482596 ASXL2Q76L83 1435 aa12.86□□□□□ -0.35
CHD6-209ENST00000482596 TEX14Q8IWB6 1497 aa12.83□□□□□ -0.36
CHD6-209ENST00000482596 ABCA10Q8WWZ4 1543 aa12.83□□□□□ -0.36
CHD6-209ENST00000482596 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.82□□□□□ -0.362e-7■■■□□ 16.3
CHD6-209ENST00000482596 PLB1Q6P1J6 1458 aa12.8□□□□□ -0.36
CHD6-209ENST00000482596 MADDQ8WXG6 1647 aa12.8□□□□□ -0.36
CHD6-209ENST00000482596 CUL7Q14999 1698 aa12.8□□□□□ -0.36
CHD6-209ENST00000482596 FHAD1B1AJZ9 1412 aa12.79□□□□□ -0.36
CHD6-209ENST00000482596 RUSC2Q8N2Y8 1516 aa12.79□□□□□ -0.36
CHD6-209ENST00000482596 RNF39Q9H2S5 420 aa12.79□□□□□ -0.36
CHD6-209ENST00000482596 EPRSP07814 1512 aaKnown RBP12.78□□□□□ -0.36
CHD6-209ENST00000482596 CACNB1Q02641 598 aaPredicted RBP12.77□□□□□ -0.37
CHD6-209ENST00000482596 ABCC2Q92887 1545 aa12.77□□□□□ -0.37
CHD6-209ENST00000482596 BCORL1Q5H9F3 1711 aa12.74□□□□□ -0.37
CHD6-209ENST00000482596 RIMS1Q86UR5 1692 aaKnown RBP12.73□□□□□ -0.37
CHD6-209ENST00000482596 MED1Q15648 1581 aaPredicted RBP12.73□□□□□ -0.37
CHD6-209ENST00000482596 TTBK1Q5TCY1 1321 aaPredicted RBP12.71□□□□□ -0.37
CHD6-209ENST00000482596 KIAA0586Q9BVV6 1533 aa12.71□□□□□ -0.38
CHD6-209ENST00000482596 STRCQ7RTU9 1775 aa12.68□□□□□ -0.38
CHD6-209ENST00000482596 PTPRGP23470 1445 aa12.66□□□□□ -0.38
CHD6-209ENST00000482596 SLC4A1APQ9BWU0 796 aaKnown RBP12.66□□□□□ -0.38
CHD6-209ENST00000482596 C1QBPQ07021 282 aaKnown RBP12.65□□□□□ -0.38
CHD6-209ENST00000482596 LTBP4Q8N2S1 1624 aa12.63□□□□□ -0.39
CHD6-209ENST00000482596 ERICH3Q5RHP9 1530 aa12.62□□□□□ -0.39
CHD6-209ENST00000482596 SLC4A2P04920 1241 aa12.61□□□□□ -0.39
CHD6-209ENST00000482596 MAGI3Q5TCQ9 1506 aa12.6□□□□□ -0.39
CHD6-209ENST00000482596 YEATS2Q9ULM3 1422 aa12.6□□□□□ -0.39
CHD6-209ENST00000482596 ARID4BQ4LE39 1312 aaPredicted RBP12.59□□□□□ -0.39
CHD6-209ENST00000482596 IQSEC2Q5JU85 1478 aa12.59□□□□□ -0.39
CHD6-209ENST00000482596 ZCCHC11Q5TAX3 1644 aaKnown RBP12.59□□□□□ -0.39
CHD6-209ENST00000482596 CD109Q6YHK3 1445 aa12.57□□□□□ -0.4
CHD6-209ENST00000482596 UHRF1BP1LA0JNW5 1464 aa12.57□□□□□ -0.4
CHD6-209ENST00000482596 CFAP43Q8NDM7 1665 aa12.56□□□□□ -0.4
CHD6-209ENST00000482596 KDM5BQ9UGL1 1544 aa12.56□□□□□ -0.4
CHD6-209ENST00000482596 UBAP1LF5GYI3 381 aa12.54□□□□□ -0.4
CHD6-209ENST00000482596 U3KPZ7 1027 aaPredicted RBP12.54□□□□□ -0.4
CHD6-209ENST00000482596 ARAP3Q8WWN8 1544 aa12.53□□□□□ -0.4
CHD6-209ENST00000482596 UACAQ9BZF9 1416 aa12.53□□□□□ -0.4
CHD6-209ENST00000482596 PREX1Q8TCU6 1659 aa12.52□□□□□ -0.4
CHD6-209ENST00000482596 TNIKQ9UKE5 1360 aa12.52□□□□□ -0.41
CHD6-209ENST00000482596 WDR7Q9Y4E6 1490 aa12.52□□□□□ -0.41
CHD6-209ENST00000482596 HSPA1LP34931 641 aa12.51□□□□□ -0.41
CHD6-209ENST00000482596 WRNQ14191 1432 aaPredicted RBP eCLIP12.51□□□□□ -0.416e-12■■□□□ 14.4
CHD6-209ENST00000482596 PTPRTO14522 1441 aa12.49□□□□□ -0.41
CHD6-209ENST00000482596 RAPGEF3O95398 923 aa12.49□□□□□ -0.41
CHD6-209ENST00000482596 SRCAPQ6ZRS2 3230 aa12.47□□□□□ -0.41
CHD6-209ENST00000482596 SIGLEC1Q9BZZ2 1709 aa12.46□□□□□ -0.41
CHD6-209ENST00000482596 FRMPD1Q5SYB0 1578 aa12.45□□□□□ -0.42
CHD6-209ENST00000482596 KCNH8Q96L42 1107 aa12.45□□□□□ -0.42
CHD6-209ENST00000482596 FER1L4A9Z1Z3 1794 aa12.44□□□□□ -0.42
CHD6-209ENST00000482596 TTC37Q6PGP7 1564 aa12.43□□□□□ -0.42
CHD6-209ENST00000482596 RGS17Q9UGC6 210 aaPredicted RBP12.42□□□□□ -0.42
CHD6-209ENST00000482596 CARMIL2Q6F5E8 1435 aa12.42□□□□□ -0.42
CHD6-209ENST00000482596 ARHGEF40Q8TER5 1519 aa12.41□□□□□ -0.42
CHD6-209ENST00000482596 CEBPAP49715 358 aaPredicted RBP12.39□□□□□ -0.43
CHD6-209ENST00000482596 SETD1AO15047 1707 aaKnown RBP12.37□□□□□ -0.43
CHD6-209ENST00000482596 PIP4K2BP78356 416 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms