RNA–Protein interactions for RNA: ENST00000482596.1

CHD6-209, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best)

Gene CHD6, Length 599 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-209ENST00000482596 AEBP2Q6ZN18 517 aaPredicted RBP20.36■□□□□ 0.85
CHD6-209ENST00000482596 CHIC1Q5VXU3 224 aa19.65■□□□□ 0.74
CHD6-209ENST00000482596 NISCHQ9Y2I1 1504 aa17.68■□□□□ 0.42
CHD6-209ENST00000482596 DNAJC5BQ9UF47 199 aa17.63■□□□□ 0.41
CHD6-209ENST00000482596 ABCC9O60706 1549 aa17.61■□□□□ 0.41
CHD6-209ENST00000482596 SENP3Q9H4L4 574 aaPredicted RBP17.35■□□□□ 0.37
CHD6-209ENST00000482596 PHF23Q9BUL5 403 aaPredicted RBP17.25■□□□□ 0.35
CHD6-209ENST00000482596 DNAJC5Q9H3Z4 198 aa16.94■□□□□ 0.3
CHD6-209ENST00000482596 CCDC180Q9P1Z9 1646 aa16.37■□□□□ 0.21
CHD6-209ENST00000482596 PABPN1Q86U42 306 aaKnown RBP eCLIP16.21■□□□□ 0.19
CHD6-209ENST00000482596 RB1CC1Q8TDY2 1594 aa16.14■□□□□ 0.17
CHD6-209ENST00000482596 FOXD1Q16676 465 aa16.12■□□□□ 0.17
CHD6-209ENST00000482596 CECR2Q9BXF3 1484 aa15.94■□□□□ 0.14
CHD6-209ENST00000482596 UNC13AQ9UPW8 1703 aa15.92■□□□□ 0.14
CHD6-209ENST00000482596 PLPPR3Q6T4P5 718 aa15.86■□□□□ 0.13
CHD6-209ENST00000482596 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.12
CHD6-209ENST00000482596 BICRAQ9NZM4 1560 aa15.82■□□□□ 0.12
CHD6-209ENST00000482596 TRIM41Q8WV44 630 aa15.76■□□□□ 0.11
CHD6-209ENST00000482596 NACADO15069 1562 aa15.72■□□□□ 0.11
CHD6-209ENST00000482596 CUX2O14529 1486 aa15.56■□□□□ 0.08
CHD6-209ENST00000482596 EIF4G1Q04637 1599 aaKnown RBP15.48■□□□□ 0.07
CHD6-209ENST00000482596 DCAF8L2P0C7V8 631 aa15.46■□□□□ 0.07
CHD6-209ENST00000482596 PPP6R1Q9UPN7 881 aa15.31■□□□□ 0.04
CHD6-209ENST00000482596 SHROOM4Q9ULL8 1493 aa15.29■□□□□ 0.04
CHD6-209ENST00000482596 ADRA2BP18089 450 aa15.29■□□□□ 0.04
CHD6-209ENST00000482596 ERCC6Q03468 1493 aa15.21■□□□□ 0.03
CHD6-209ENST00000482596 PIAS4Q8N2W9 510 aaPredicted RBP15.16■□□□□ 0.02
CHD6-209ENST00000482596 MYO15BQ96JP2 1530 aa15.07■□□□□ 0
CHD6-209ENST00000482596 MSH5O43196 834 aa14.98□□□□□ -0.01
CHD6-209ENST00000482596 SCRIBQ14160 1630 aa14.92□□□□□ -0.02
CHD6-209ENST00000482596 THOC2Q8NI27 1593 aaKnown RBP14.88□□□□□ -0.03
CHD6-209ENST00000482596 NESP48681 1621 aa14.82□□□□□ -0.04
CHD6-209ENST00000482596 ILDR1Q86SU0 546 aaPredicted RBP14.76□□□□□ -0.05
CHD6-209ENST00000482596 BAZ1AQ9NRL2 1556 aaPredicted RBP14.7□□□□□ -0.06
CHD6-209ENST00000482596 RIMBP3CA6NJZ7 1639 aa14.7□□□□□ -0.06
CHD6-209ENST00000482596 RIMBP3BA6NNM3 1639 aa14.7□□□□□ -0.06
CHD6-209ENST00000482596 RIMBP3Q9UFD9 1639 aa14.7□□□□□ -0.06
CHD6-209ENST00000482596 SMARCA2P51531 1590 aa14.68□□□□□ -0.06
CHD6-209ENST00000482596 TRHP20396 242 aaPredicted RBP14.66□□□□□ -0.06
CHD6-209ENST00000482596 OSCARQ8IYS5 282 aa14.64□□□□□ -0.07
CHD6-209ENST00000482596 KIF21AQ7Z4S6 1674 aa14.59□□□□□ -0.07
CHD6-209ENST00000482596 NCAPD3P42695 1498 aa14.54□□□□□ -0.08
CHD6-209ENST00000482596 ARHGEF11O15085 1522 aa14.49□□□□□ -0.09
CHD6-209ENST00000482596 DCAF1Q9Y4B6 1507 aa14.46□□□□□ -0.09
CHD6-209ENST00000482596 CYB5RLQ6IPT4 315 aa14.45□□□□□ -0.1
CHD6-209ENST00000482596 LAMC3Q9Y6N6 1575 aa14.41□□□□□ -0.1
CHD6-209ENST00000482596 ZCCHC6Q5VYS8 1495 aaKnown RBP14.4□□□□□ -0.1
CHD6-209ENST00000482596 POTEDQ86YR6 584 aa14.39□□□□□ -0.11
CHD6-209ENST00000482596 ATAD2BQ9ULI0 1458 aa14.37□□□□□ -0.11
CHD6-209ENST00000482596 WDR62O43379 1518 aa14.35□□□□□ -0.11
CHD6-209ENST00000482596 PDS5BQ9NTI5 1447 aa14.33□□□□□ -0.11
CHD6-209ENST00000482596 MRC2Q9UBG0 1479 aa14.33□□□□□ -0.12
CHD6-209ENST00000482596 HMGXB3Q12766 1538 aa14.33□□□□□ -0.12
CHD6-209ENST00000482596 ARAP1Q96P48 1450 aa14.29□□□□□ -0.12
CHD6-209ENST00000482596 BAZ1BQ9UIG0 1483 aaKnown RBP14.14□□□□□ -0.15
CHD6-209ENST00000482596 SMARCA4P51532 1647 aa14.08□□□□□ -0.16
CHD6-209ENST00000482596 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
CHD6-209ENST00000482596 SCAF1Q9H7N4 1312 aaKnown RBP14.03□□□□□ -0.16
CHD6-209ENST00000482596 CEP164Q9UPV0 1460 aa14.02□□□□□ -0.16
CHD6-209ENST00000482596 KDM4FA0A1W2PPD8 638 aa13.98□□□□□ -0.17
CHD6-209ENST00000482596 ZNF608Q9ULD9 1512 aaPredicted RBP13.97□□□□□ -0.17
CHD6-209ENST00000482596 CHD1O14646 1710 aa13.97□□□□□ -0.17
CHD6-209ENST00000482596 MAPK8IP2Q13387 824 aaPredicted RBP13.95□□□□□ -0.18
CHD6-209ENST00000482596 PPP4R3CPQ6ZMV5 832 aa13.95□□□□□ -0.18
CHD6-209ENST00000482596 RSF1Q96T23 1441 aaPredicted RBP13.95□□□□□ -0.18
CHD6-209ENST00000482596 URB2Q14146 1524 aaKnown RBP13.93□□□□□ -0.18
CHD6-209ENST00000482596 FANCD2Q9BXW9 1451 aa13.93□□□□□ -0.18
CHD6-209ENST00000482596 PEG3Q9GZU2 1588 aa13.9□□□□□ -0.18
CHD6-209ENST00000482596 LMTK3Q96Q04 1460 aa13.89□□□□□ -0.19
CHD6-209ENST00000482596 FBXO41Q8TF61 875 aa13.85□□□□□ -0.19
CHD6-209ENST00000482596 ERCC6L2Q5T890 1561 aa13.83□□□□□ -0.2
CHD6-209ENST00000482596 SOCS7O14512 581 aa13.82□□□□□ -0.2
CHD6-209ENST00000482596 EIF4G3O43432 1585 aaKnown RBP13.81□□□□□ -0.2
CHD6-209ENST00000482596 ILDR2Q71H61 639 aa13.8□□□□□ -0.2
CHD6-209ENST00000482596 FBLN2P98095 1184 aa13.79□□□□□ -0.2
CHD6-209ENST00000482596 DMRT2Q9Y5R5 561 aa13.79□□□□□ -0.2
CHD6-209ENST00000482596 HECW2Q9P2P5 1572 aa13.79□□□□□ -0.2
CHD6-209ENST00000482596 IFT140Q96RY7 1462 aa13.76□□□□□ -0.21
CHD6-209ENST00000482596 KIF13AQ9H1H9 1805 aa13.74□□□□□ -0.21
CHD6-209ENST00000482596 CLASP1Q7Z460 1538 aa13.73□□□□□ -0.21
CHD6-209ENST00000482596 AQRO60306 1485 aaKnown RBP eCLIP13.67□□□□□ -0.229e-19■□□□□ 9
CHD6-209ENST00000482596 GAPVD1Q14C86 1478 aa13.67□□□□□ -0.22
CHD6-209ENST00000482596 MROH2BQ7Z745 1585 aa13.66□□□□□ -0.22
CHD6-209ENST00000482596 CFTRP13569 1480 aa13.65□□□□□ -0.22
CHD6-209ENST00000482596 CNKSR2Q8WXI2 1034 aa13.61□□□□□ -0.23
CHD6-209ENST00000482596 SYNJ2O15056 1496 aa13.59□□□□□ -0.23
CHD6-209ENST00000482596 DISP3Q9P2K9 1392 aa13.58□□□□□ -0.24
CHD6-209ENST00000482596 ADGRL1O94910 1474 aa13.56□□□□□ -0.24
CHD6-209ENST00000482596 SYNJ1O43426 1573 aa13.56□□□□□ -0.24
CHD6-209ENST00000482596 KDM6BO15054 1643 aa13.56□□□□□ -0.24
CHD6-209ENST00000482596 TOPBP1Q92547 1522 aa13.54□□□□□ -0.24
CHD6-209ENST00000482596 TARBP1Q13395 1621 aaKnown RBP13.53□□□□□ -0.24
CHD6-209ENST00000482596 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
CHD6-209ENST00000482596 SNAPC4Q5SXM2 1469 aa13.48□□□□□ -0.25
CHD6-209ENST00000482596 WIZO95785 1651 aa13.47□□□□□ -0.25
CHD6-209ENST00000482596 PRDM2Q13029 1718 aa13.46□□□□□ -0.25
CHD6-209ENST00000482596 FAM69CQ0P6D2 419 aa13.45□□□□□ -0.26
CHD6-209ENST00000482596 CHMP7Q8WUX9 453 aaPredicted RBP13.44□□□□□ -0.26
CHD6-209ENST00000482596 TSPOAP1O95153 1857 aa13.42□□□□□ -0.26
CHD6-209ENST00000482596 HOXD11P31277 338 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms