RNA–Protein interactions for RNA: ENST00000475997.6

HNRNPU-208, Transcript of heterogeneous nuclear ribonucleoprotein U, human

TSL 5

Gene HNRNPU, Length 5,290 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPU-208	ENST00000475997	CARMIL1	Q5VZK9	1371 aa		8.27	□□□□□ -1.09
HNRNPU-208	ENST00000475997	SYNJ1	O43426	1573 aa		8.27	□□□□□ -1.09
HNRNPU-208	ENST00000475997	MTUS2	Q5JR59	1369 aa		8.27	□□□□□ -1.09
HNRNPU-208	ENST00000475997	UPF2	Q9HAU5	1272 aa	Known RBP	8.26	□□□□□ -1.09
HNRNPU-208	ENST00000475997	ZNF326	Q5BKZ1	582 aa	Known RBP	8.25	□□□□□ -1.09
HNRNPU-208	ENST00000475997	RAB3GAP2	Q9H2M9	1393 aa		8.25	□□□□□ -1.09
HNRNPU-208	ENST00000475997	HNRNPU	Q00839	825 aa	Known RBP eCLIP	8.25	□□□□□ -1.09
HNRNPU-208	ENST00000475997	KIF21B	O75037	1637 aa		8.24	□□□□□ -1.09
HNRNPU-208	ENST00000475997	HSP90AA1	P07900	732 aa	Known RBP	8.23	□□□□□ -1.09
HNRNPU-208	ENST00000475997	CANX	P27824	592 aa	Known RBP	8.23	□□□□□ -1.09
HNRNPU-208	ENST00000475997	RRP7BP	Q9NSQ0	103 aa		8.23	□□□□□ -1.09
HNRNPU-208	ENST00000475997	ANP32E	Q9BTT0	268 aa		8.23	□□□□□ -1.09
HNRNPU-208	ENST00000475997	SLC4A1AP	Q9BWU0	796 aa	Known RBP	8.23	□□□□□ -1.09
HNRNPU-208	ENST00000475997	NPM2	Q86SE8	214 aa	Known RBP	8.23	□□□□□ -1.09
HNRNPU-208	ENST00000475997	KCNH8	Q96L42	1107 aa		8.22	□□□□□ -1.09
HNRNPU-208	ENST00000475997	SETD5	Q9C0A6	1442 aa		8.22	□□□□□ -1.09
HNRNPU-208	ENST00000475997	TRIM44	Q96DX7	344 aa	Predicted RBP	8.22	□□□□□ -1.09
HNRNPU-208	ENST00000475997	ERICH6B	Q5W0A0	696 aa		8.2	□□□□□ -1.1
HNRNPU-208	ENST00000475997	FBLN2	P98095	1184 aa		8.2	□□□□□ -1.1
HNRNPU-208	ENST00000475997	FHAD1	B1AJZ9	1412 aa		8.2	□□□□□ -1.1
HNRNPU-208	ENST00000475997	EIF4G1	Q04637	1599 aa	Known RBP	8.2	□□□□□ -1.1
HNRNPU-208	ENST00000475997	IRX6	P78412	446 aa	Predicted RBP	8.2	□□□□□ -1.1
HNRNPU-208	ENST00000475997	FAM9B	Q8IZU0	186 aa		8.2	□□□□□ -1.1
HNRNPU-208	ENST00000475997	ZNF777	Q9ULD5	760 aa	Predicted RBP	8.19	□□□□□ -1.1
HNRNPU-208	ENST00000475997	CDK11B	P21127	795 aa	Known RBP	8.18	□□□□□ -1.1
HNRNPU-208	ENST00000475997	ARAP1	Q96P48	1450 aa		8.18	□□□□□ -1.1
HNRNPU-208	ENST00000475997	NCL	P19338	710 aa	Known RBP	8.18	□□□□□ -1.1
HNRNPU-208	ENST00000475997	BICRA	Q9NZM4	1560 aa		8.17	□□□□□ -1.1
HNRNPU-208	ENST00000475997	PPP1R15A	O75807	674 aa	Predicted RBP	8.17	□□□□□ -1.1
HNRNPU-208	ENST00000475997	TIMELESS	Q9UNS1	1208 aa		8.17	□□□□□ -1.1
HNRNPU-208	ENST00000475997	IGF1R	P08069	1367 aa		8.17	□□□□□ -1.1
HNRNPU-208	ENST00000475997	NBR1	Q14596	966 aa		8.16	□□□□□ -1.1
HNRNPU-208	ENST00000475997	NEFM	P07197	916 aa		8.16	□□□□□ -1.1
HNRNPU-208	ENST00000475997	EIF4G2	P78344	907 aa	Known RBP eCLIP	8.16	□□□□□ -1.1
HNRNPU-208	ENST00000475997	CADPS	Q9ULU8	1353 aa		8.16	□□□□□ -1.1
HNRNPU-208	ENST00000475997	PRX	Q9BXM0	1461 aa		8.15	□□□□□ -1.1
HNRNPU-208	ENST00000475997	FHOD3	Q2V2M9	1422 aa		8.14	□□□□□ -1.11
HNRNPU-208	ENST00000475997	MRS2	Q9HD23	443 aa		8.14	□□□□□ -1.11
HNRNPU-208	ENST00000475997	ARHGAP35	Q9NRY4	1499 aa		8.14	□□□□□ -1.11
HNRNPU-208	ENST00000475997	UNC13A	Q9UPW8	1703 aa		8.13	□□□□□ -1.11
HNRNPU-208	ENST00000475997	TOP2B	Q02880	1626 aa		8.13	□□□□□ -1.11
HNRNPU-208	ENST00000475997	NCAPD3	P42695	1498 aa		8.13	□□□□□ -1.11
HNRNPU-208	ENST00000475997	TSHZ2	Q9NRE2	1034 aa		8.12	□□□□□ -1.11
HNRNPU-208	ENST00000475997	TDRD9	Q8NDG6	1382 aa	Known RBP	8.12	□□□□□ -1.11
HNRNPU-208	ENST00000475997	ERICH3	Q5RHP9	1530 aa		8.12	□□□□□ -1.11
HNRNPU-208	ENST00000475997	CCER2	I3L3R5	266 aa		8.12	□□□□□ -1.11
HNRNPU-208	ENST00000475997	RRBP1	Q9P2E9	1410 aa	Known RBP	8.12	□□□□□ -1.11
HNRNPU-208	ENST00000475997	PHLDB1	Q86UU1	1377 aa		8.11	□□□□□ -1.11
HNRNPU-208	ENST00000475997	DDRGK1	Q96HY6	314 aa		8.11	□□□□□ -1.11
HNRNPU-208	ENST00000475997	SENP3-EIF4A1	A0A087X0R7	540 aa		8.1	□□□□□ -1.11
HNRNPU-208	ENST00000475997	CUX1	P39880	1505 aa		8.1	□□□□□ -1.11
HNRNPU-208	ENST00000475997	FOXD1	Q16676	465 aa		8.09	□□□□□ -1.11
HNRNPU-208	ENST00000475997	CCDC136	Q96JN2	1154 aa		8.09	□□□□□ -1.11
HNRNPU-208	ENST00000475997	FGD5	Q6ZNL6	1462 aa		8.09	□□□□□ -1.11
HNRNPU-208	ENST00000475997	PEG3	Q9GZU2	1588 aa		8.09	□□□□□ -1.11
HNRNPU-208	ENST00000475997	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	8.09	□□□□□ -1.12
HNRNPU-208	ENST00000475997	CFTR	P13569	1480 aa		8.08	□□□□□ -1.12
HNRNPU-208	ENST00000475997	HSPA5	P11021	654 aa	Known RBP	8.08	□□□□□ -1.12
HNRNPU-208	ENST00000475997	PPM1G	O15355	546 aa	Predicted RBP	8.08	□□□□□ -1.12
HNRNPU-208	ENST00000475997	KDM2A	Q9Y2K7	1162 aa		8.08	□□□□□ -1.12
HNRNPU-208	ENST00000475997	FMN1	Q68DA7	1419 aa		8.08	□□□□□ -1.12
HNRNPU-208	ENST00000475997	LRRC9	Q6ZRR7	1453 aa		8.07	□□□□□ -1.12
HNRNPU-208	ENST00000475997	GOLGA6L22	H0YM25	854 aa		8.07	□□□□□ -1.12
HNRNPU-208	ENST00000475997	BECN1	Q14457	450 aa		8.07	□□□□□ -1.12
HNRNPU-208	ENST00000475997	SALL2	Q9Y467	1007 aa	Predicted RBP	8.07	□□□□□ -1.12
HNRNPU-208	ENST00000475997	TMC1	Q8TDI8	760 aa		8.06	□□□□□ -1.12
HNRNPU-208	ENST00000475997	RBM19	Q9Y4C8	960 aa	Known RBP	8.06	□□□□□ -1.12
HNRNPU-208	ENST00000475997	RAD54L2	Q9Y4B4	1467 aa		8.06	□□□□□ -1.12
HNRNPU-208	ENST00000475997	NAP1L5	Q96NT1	182 aa	Predicted RBP	8.06	□□□□□ -1.12
HNRNPU-208	ENST00000475997	FANCD2	Q9BXW9	1451 aa		8.05	□□□□□ -1.12
HNRNPU-208	ENST00000475997	BCL11A	Q9H165	835 aa		8.05	□□□□□ -1.12
HNRNPU-208	ENST00000475997	ARX	Q96QS3	562 aa		8.05	□□□□□ -1.12
HNRNPU-208	ENST00000475997	MPHOSPH9	Q99550	1183 aa		8.04	□□□□□ -1.12
HNRNPU-208	ENST00000475997	CFDP1	Q9UEE9	299 aa	Predicted RBP	8.04	□□□□□ -1.12
HNRNPU-208	ENST00000475997	CHMP7	Q8WUX9	453 aa	Predicted RBP	8.04	□□□□□ -1.12
HNRNPU-208	ENST00000475997	L3MBTL2	Q969R5	705 aa		8.04	□□□□□ -1.12
HNRNPU-208	ENST00000475997	TSPY4	P0CV99	314 aa		8.03	□□□□□ -1.12
HNRNPU-208	ENST00000475997	TSPY10	P0CW01	314 aa		8.03	□□□□□ -1.12
HNRNPU-208	ENST00000475997	DNTTIP2	Q5QJE6	756 aa	Known RBP	8.02	□□□□□ -1.13
HNRNPU-208	ENST00000475997	B4GALNT3	Q6L9W6	998 aa		8.02	□□□□□ -1.13
HNRNPU-208	ENST00000475997	PTMA	P06454	111 aa	Known RBP	8.01	□□□□□ -1.13
HNRNPU-208	ENST00000475997	CCDC18	Q5T9S5	1454 aa		8.01	□□□□□ -1.13
HNRNPU-208	ENST00000475997	HMGXB3	Q12766	1538 aa		8.01	□□□□□ -1.13
HNRNPU-208	ENST00000475997	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	8.01	□□□□□ -1.13	2e-13	■■□□□ 13.2
HNRNPU-208	ENST00000475997	PPP4R2	Q9NY27	417 aa		8.01	□□□□□ -1.13
HNRNPU-208	ENST00000475997	FGD6	Q6ZV73	1430 aa		8.01	□□□□□ -1.13
HNRNPU-208	ENST00000475997	TIAM1	Q13009	1591 aa		8	□□□□□ -1.13
HNRNPU-208	ENST00000475997	WDR97	A6NE52	1622 aa		7.99	□□□□□ -1.13
HNRNPU-208	ENST00000475997	PLEKHD1	A6NEE1	506 aa		7.99	□□□□□ -1.13
HNRNPU-208	ENST00000475997	RGL3	Q3MIN7	710 aa		7.99	□□□□□ -1.13
HNRNPU-208	ENST00000475997	BIVM-ERCC5	R4GMW8	1640 aa		7.98	□□□□□ -1.13
HNRNPU-208	ENST00000475997	CARD11	Q9BXL7	1154 aa		7.98	□□□□□ -1.13
HNRNPU-208	ENST00000475997	CASKIN1	Q8WXD9	1431 aa		7.98	□□□□□ -1.13
HNRNPU-208	ENST00000475997	PDS5B	Q9NTI5	1447 aa		7.98	□□□□□ -1.13
HNRNPU-208	ENST00000475997	SLC24A1	O60721	1099 aa		7.97	□□□□□ -1.13
HNRNPU-208	ENST00000475997	UACA	Q9BZF9	1416 aa		7.97	□□□□□ -1.13
HNRNPU-208	ENST00000475997	PKD2	Q13563	968 aa		7.96	□□□□□ -1.13
HNRNPU-208	ENST00000475997	PRKRIP1	Q9H875	184 aa	Predicted RBP	7.95	□□□□□ -1.14
HNRNPU-208	ENST00000475997	MYOM3	Q5VTT5	1437 aa		7.95	□□□□□ -1.14
HNRNPU-208	ENST00000475997	NES	P48681	1621 aa		7.95	□□□□□ -1.14

Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms