RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 CHGAP10645 457 aaKnown RBP10.42□□□□□ -0.74
CDC42BPA-211ENST00000466538 VSIG10Q8N0Z9 540 aa10.42□□□□□ -0.74
CDC42BPA-211ENST00000466538 SPRYD3Q8NCJ5 442 aa10.41□□□□□ -0.74
CDC42BPA-211ENST00000466538 PAXIP1Q6ZW49 1069 aaPredicted RBP10.4□□□□□ -0.74
CDC42BPA-211ENST00000466538 RIOK3O14730 519 aaKnown RBP10.37□□□□□ -0.75
CDC42BPA-211ENST00000466538 RASEFQ8IZ41 740 aa10.37□□□□□ -0.75
CDC42BPA-211ENST00000466538 HS6ST3Q8IZP7 471 aa10.37□□□□□ -0.75
CDC42BPA-211ENST00000466538 CFAP44Q96MT7 982 aa10.37□□□□□ -0.75
CDC42BPA-211ENST00000466538 RNF25Q96BH1 459 aaPredicted RBP10.36□□□□□ -0.75
CDC42BPA-211ENST00000466538 DNAJC5Q9H3Z4 198 aa10.36□□□□□ -0.75
CDC42BPA-211ENST00000466538 VGFO15240 615 aaPredicted RBP10.32□□□□□ -0.76
CDC42BPA-211ENST00000466538 SGIP1Q9BQI5 828 aa10.31□□□□□ -0.76
CDC42BPA-211ENST00000466538 FARP1Q9Y4F1 1045 aaPredicted RBP10.29□□□□□ -0.76
CDC42BPA-211ENST00000466538 CHADLQ6NUI6 762 aa10.28□□□□□ -0.76
CDC42BPA-211ENST00000466538 FXR2P51116 673 aaKnown RBP eCLIP10.26□□□□□ -0.77
CDC42BPA-211ENST00000466538 PYGBP11216 843 aa10.25□□□□□ -0.77
CDC42BPA-211ENST00000466538 PRKAR2AP13861 404 aaKnown RBP10.24□□□□□ -0.77
CDC42BPA-211ENST00000466538 STK25O00506 426 aa10.23□□□□□ -0.77
CDC42BPA-211ENST00000466538 KDM2AQ9Y2K7 1162 aa10.22□□□□□ -0.77
CDC42BPA-211ENST00000466538 BCANQ96GW7 911 aa10.21□□□□□ -0.77
CDC42BPA-211ENST00000466538 TSPYL2Q9H2G4 693 aaPredicted RBP10.21□□□□□ -0.77
CDC42BPA-211ENST00000466538 TSHZ2Q9NRE2 1034 aa10.21□□□□□ -0.77
CDC42BPA-211ENST00000466538 ZNF467Q7Z7K2 595 aaPredicted RBP10.2□□□□□ -0.78
CDC42BPA-211ENST00000466538 RYDENQ9NUL5 291 aaKnown RBP10.19□□□□□ -0.78
CDC42BPA-211ENST00000466538 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.18□□□□□ -0.78
CDC42BPA-211ENST00000466538 NKX1-1Q15270 411 aaPredicted RBP10.18□□□□□ -0.78
CDC42BPA-211ENST00000466538 ZFP91Q96JP5 570 aaPredicted RBP10.18□□□□□ -0.78
CDC42BPA-211ENST00000466538 CHRDL2Q6WN34 429 aa10.17□□□□□ -0.78
CDC42BPA-211ENST00000466538 BCL11BQ9C0K0 894 aaPredicted RBP10.17□□□□□ -0.78
CDC42BPA-211ENST00000466538 GTPBP6O43824 516 aaPredicted RBP10.16□□□□□ -0.78
CDC42BPA-211ENST00000466538 STK24Q9Y6E0 443 aa10.16□□□□□ -0.78
CDC42BPA-211ENST00000466538 PAK3O75914 559 aaPredicted RBP10.15□□□□□ -0.78
CDC42BPA-211ENST00000466538 CCDC61Q9Y6R9 512 aa10.14□□□□□ -0.79
CDC42BPA-211ENST00000466538 PIP4P2Q8N4L2 257 aa10.12□□□□□ -0.79
CDC42BPA-211ENST00000466538 PDAP1Q13442 181 aaKnown RBP10.11□□□□□ -0.79
CDC42BPA-211ENST00000466538 ZNF579Q8NAF0 562 aaKnown RBP10.11□□□□□ -0.79
CDC42BPA-211ENST00000466538 PCDHB8Q9UN66 801 aa10.06□□□□□ -0.8
CDC42BPA-211ENST00000466538 PCDHB13Q9Y5F0 798 aa10.06□□□□□ -0.8
CDC42BPA-211ENST00000466538 PSEN1P49768 467 aa10.04□□□□□ -0.8
CDC42BPA-211ENST00000466538 KIF12Q96FN5 646 aa10.03□□□□□ -0.8
CDC42BPA-211ENST00000466538 MAP3K13O43283 966 aa10□□□□□ -0.81
CDC42BPA-211ENST00000466538 IFNL1Q8IU54 200 aa9.99□□□□□ -0.81
CDC42BPA-211ENST00000466538 ZRANB1Q9UGI0 708 aa9.98□□□□□ -0.81
CDC42BPA-211ENST00000466538 CD44P16070 742 aaKnown RBP9.97□□□□□ -0.81
CDC42BPA-211ENST00000466538 SOX12O15370 315 aa9.94□□□□□ -0.82
CDC42BPA-211ENST00000466538 NBR1Q14596 966 aa9.92□□□□□ -0.82
CDC42BPA-211ENST00000466538 MFRPQ9BY79 579 aa9.92□□□□□ -0.82
CDC42BPA-211ENST00000466538 NLRP6P59044 892 aa9.91□□□□□ -0.82
CDC42BPA-211ENST00000466538 EFCAB3Q8N7B9 438 aa9.89□□□□□ -0.83
CDC42BPA-211ENST00000466538 C19orf67A6NJJ6 358 aa9.88□□□□□ -0.83
CDC42BPA-211ENST00000466538 CABP2Q9NPB3 220 aa9.88□□□□□ -0.83
CDC42BPA-211ENST00000466538 PHF12Q96QT6 1004 aa9.87□□□□□ -0.83
CDC42BPA-211ENST00000466538 FBXO22Q8NEZ5 403 aa9.86□□□□□ -0.83
CDC42BPA-211ENST00000466538 WDR70Q9NW82 654 aa9.85□□□□□ -0.83
CDC42BPA-211ENST00000466538 P3H3Q8IVL6 736 aa9.84□□□□□ -0.83
CDC42BPA-211ENST00000466538 PHF8Q9UPP1 1060 aa9.82□□□□□ -0.84
CDC42BPA-211ENST00000466538 PRKCSHP14314 528 aaPredicted RBP9.81□□□□□ -0.84
CDC42BPA-211ENST00000466538 CLCN6P51797 869 aa9.81□□□□□ -0.84
CDC42BPA-211ENST00000466538 GOLGA2Q08379 1002 aa9.81□□□□□ -0.84
CDC42BPA-211ENST00000466538 CADPS2Q86UW7 1296 aa9.81□□□□□ -0.84
CDC42BPA-211ENST00000466538 TPRNQ4KMQ1 711 aa9.8□□□□□ -0.84
CDC42BPA-211ENST00000466538 TMEM106CQ9BVX2 250 aa9.8□□□□□ -0.84
CDC42BPA-211ENST00000466538 PPP1R37O75864 691 aa9.79□□□□□ -0.84
CDC42BPA-211ENST00000466538 MS4A3Q96HJ5 214 aa9.79□□□□□ -0.84
CDC42BPA-211ENST00000466538 TIE1P35590 1138 aa9.78□□□□□ -0.84
CDC42BPA-211ENST00000466538 MKRN3Q13064 507 aaKnown RBP9.77□□□□□ -0.85
CDC42BPA-211ENST00000466538 PDE4AP27815 886 aa9.72□□□□□ -0.85
CDC42BPA-211ENST00000466538 MS4A4AQ96JQ5 239 aa9.72□□□□□ -0.85
CDC42BPA-211ENST00000466538 TRPC6Q9Y210 931 aa9.72□□□□□ -0.85
CDC42BPA-211ENST00000466538 TTLL13PA6NNM8 815 aa9.71□□□□□ -0.86
CDC42BPA-211ENST00000466538 HAX1O00165 279 aa9.7□□□□□ -0.86
CDC42BPA-211ENST00000466538 E2F4Q16254 413 aa9.69□□□□□ -0.86
CDC42BPA-211ENST00000466538 ILDR1Q86SU0 546 aaPredicted RBP9.69□□□□□ -0.86
CDC42BPA-211ENST00000466538 KCNV2Q8TDN2 545 aa9.69□□□□□ -0.86
CDC42BPA-211ENST00000466538 ARHGEF1Q92888 912 aaKnown RBP9.69□□□□□ -0.86
CDC42BPA-211ENST00000466538 BMP2KQ9NSY1 1161 aaPredicted RBP9.68□□□□□ -0.86
CDC42BPA-211ENST00000466538 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.66□□□□□ -0.869e-8■■■■■ 34.4
CDC42BPA-211ENST00000466538 GALR2O43603 387 aaPredicted RBP9.65□□□□□ -0.86
CDC42BPA-211ENST00000466538 NCKAP5LQ9HCH0 1330 aa9.64□□□□□ -0.87
CDC42BPA-211ENST00000466538 MFSD10Q14728 455 aa9.64□□□□□ -0.87
CDC42BPA-211ENST00000466538 LARP6Q9BRS8 491 aaKnown RBP9.64□□□□□ -0.87
CDC42BPA-211ENST00000466538 CRISPLD2Q9H0B8 497 aa9.64□□□□□ -0.87
CDC42BPA-211ENST00000466538 TRIM35Q9UPQ4 493 aa9.64□□□□□ -0.87
CDC42BPA-211ENST00000466538 TULP1O00294 542 aaPredicted RBP9.61□□□□□ -0.87
CDC42BPA-211ENST00000466538 DDX27Q96GQ7 796 aaKnown RBP9.6□□□□□ -0.87
CDC42BPA-211ENST00000466538 ARIH1Q9Y4X5 557 aaPredicted RBP9.6□□□□□ -0.87
CDC42BPA-211ENST00000466538 EVX2Q03828 476 aa9.59□□□□□ -0.87
CDC42BPA-211ENST00000466538 IER5LQ5T953 404 aa9.58□□□□□ -0.88
CDC42BPA-211ENST00000466538 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.58□□□□□ -0.88
CDC42BPA-211ENST00000466538 ASTLQ6HA08 431 aaPredicted RBP9.57□□□□□ -0.88
CDC42BPA-211ENST00000466538 ATMINO43313 823 aaPredicted RBP9.56□□□□□ -0.88
CDC42BPA-211ENST00000466538 ATN1P54259 1190 aaPredicted RBP9.56□□□□□ -0.88
CDC42BPA-211ENST00000466538 CAMK2BQ13554 666 aa9.56□□□□□ -0.88
CDC42BPA-211ENST00000466538 GPHNQ9NQX3 736 aaPredicted RBP9.56□□□□□ -0.88
CDC42BPA-211ENST00000466538 OCEL1Q9H607 264 aa9.55□□□□□ -0.88
CDC42BPA-211ENST00000466538 IRX5P78411 483 aaPredicted RBP9.53□□□□□ -0.88
CDC42BPA-211ENST00000466538 LMOD2Q6P5Q4 547 aa9.53□□□□□ -0.88
CDC42BPA-211ENST00000466538 TESPA1A2RU30 521 aaPredicted RBP9.52□□□□□ -0.89
CDC42BPA-211ENST00000466538 SMYD5Q6GMV2 418 aa9.52□□□□□ -0.89
CDC42BPA-211ENST00000466538 DPY19L2Q6NUT2 758 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms