RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 MAP3K1Q13233 1512 aa28.39■■■□□ 2.14
LIMS2-212ENST00000466410 TOPBP1Q92547 1522 aa28.37■■■□□ 2.13
LIMS2-212ENST00000466410 RAD54L2Q9Y4B4 1467 aa28.33■■■□□ 2.13
LIMS2-212ENST00000466410 LRRC9Q6ZRR7 1453 aa28.32■■■□□ 2.12
LIMS2-212ENST00000466410 POLA1P09884 1462 aaPredicted RBP28.3■■■□□ 2.12
LIMS2-212ENST00000466410 P3H3Q8IVL6 736 aa28.3■■■□□ 2.12
LIMS2-212ENST00000466410 RAB3GAP2Q9H2M9 1393 aa28.28■■■□□ 2.12
LIMS2-212ENST00000466410 FHAD1B1AJZ9 1412 aa28.27■■■□□ 2.12
LIMS2-212ENST00000466410 URB2Q14146 1524 aaKnown RBP28.27■■■□□ 2.12
LIMS2-212ENST00000466410 ABCA10Q8WWZ4 1543 aa28.26■■■□□ 2.11
LIMS2-212ENST00000466410 PHLDB1Q86UU1 1377 aa28.26■■■□□ 2.11
LIMS2-212ENST00000466410 PCF11O94913 1555 aaKnown RBP28.24■■■□□ 2.11
LIMS2-212ENST00000466410 CFAP43Q8NDM7 1665 aa28.2■■■□□ 2.11
LIMS2-212ENST00000466410 KIF21AQ7Z4S6 1674 aa28.2■■■□□ 2.1
LIMS2-212ENST00000466410 FHOD3Q2V2M9 1422 aa28.19■■■□□ 2.1
LIMS2-212ENST00000466410 ATP1B4Q9UN42 357 aaPredicted RBP28.18■■■□□ 2.1
LIMS2-212ENST00000466410 MAPKBP1O60336 1514 aa28.17■■■□□ 2.1
LIMS2-212ENST00000466410 PDS5BQ9NTI5 1447 aa28.17■■■□□ 2.1
LIMS2-212ENST00000466410 SETD5Q9C0A6 1442 aa28.16■■■□□ 2.1
LIMS2-212ENST00000466410 FAM50AQ14320 339 aaKnown RBP28.15■■■□□ 2.1
LIMS2-212ENST00000466410 CUL7Q14999 1698 aa28.11■■■□□ 2.09
LIMS2-212ENST00000466410 EFCAB5A4FU69 1503 aa28.1■■■□□ 2.09
LIMS2-212ENST00000466410 FYCO1Q9BQS8 1478 aa28.09■■■□□ 2.09
LIMS2-212ENST00000466410 WDR97A6NE52 1622 aa28.09■■■□□ 2.09
LIMS2-212ENST00000466410 CTTNBP2Q8WZ74 1663 aa28.06■■■□□ 2.08
LIMS2-212ENST00000466410 CASKIN1Q8WXD9 1431 aa28.06■■■□□ 2.08
LIMS2-212ENST00000466410 AQRO60306 1485 aaKnown RBP eCLIP28.03■■■□□ 2.08
LIMS2-212ENST00000466410 TDRD9Q8NDG6 1382 aaKnown RBP27.99■■■□□ 2.07
LIMS2-212ENST00000466410 SIN3AQ96ST3 1273 aa27.97■■■□□ 2.07
LIMS2-212ENST00000466410 ABCA5Q8WWZ7 1642 aa27.96■■■□□ 2.07
LIMS2-212ENST00000466410 FMN1Q68DA7 1419 aa27.95■■■□□ 2.06
LIMS2-212ENST00000466410 SNAPC4Q5SXM2 1469 aa27.92■■■□□ 2.06
LIMS2-212ENST00000466410 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.91■■■□□ 2.06
LIMS2-212ENST00000466410 TARBP1Q13395 1621 aaKnown RBP27.89■■■□□ 2.05
LIMS2-212ENST00000466410 GAPVD1Q14C86 1478 aa27.88■■■□□ 2.05
LIMS2-212ENST00000466410 FGD6Q6ZV73 1430 aa27.86■■■□□ 2.05
LIMS2-212ENST00000466410 SAMD9Q5K651 1589 aa27.84■■■□□ 2.05
LIMS2-212ENST00000466410 MTUS2Q5JR59 1369 aa27.83■■■□□ 2.05
LIMS2-212ENST00000466410 MRC2Q9UBG0 1479 aa27.81■■■□□ 2.04
LIMS2-212ENST00000466410 LRRIQ1Q96JM4 1722 aa27.8■■■□□ 2.04
LIMS2-212ENST00000466410 TIMELESSQ9UNS1 1208 aa27.77■■■□□ 2.04
LIMS2-212ENST00000466410 GRIN2BQ13224 1484 aa27.76■■■□□ 2.03
LIMS2-212ENST00000466410 PTPRKQ15262 1439 aa27.74■■■□□ 2.03
LIMS2-212ENST00000466410 KCNH8Q96L42 1107 aa27.73■■■□□ 2.03
LIMS2-212ENST00000466410 NCOA2Q15596 1464 aa27.72■■■□□ 2.03
LIMS2-212ENST00000466410 PPP1R15AO75807 674 aaPredicted RBP27.71■■■□□ 2.03
LIMS2-212ENST00000466410 DDX10Q13206 875 aaKnown RBP27.7■■■□□ 2.02
LIMS2-212ENST00000466410 CCDC18Q5T9S5 1454 aa27.7■■■□□ 2.02
LIMS2-212ENST00000466410 PBRM1Q86U86 1689 aa27.69■■■□□ 2.02
LIMS2-212ENST00000466410 HFM1A2PYH4 1435 aa27.68■■■□□ 2.02
LIMS2-212ENST00000466410 MYOM3Q5VTT5 1437 aa27.68■■■□□ 2.02
LIMS2-212ENST00000466410 THOC2Q8NI27 1593 aaKnown RBP27.67■■■□□ 2.02
LIMS2-212ENST00000466410 PTPN23Q9H3S7 1636 aa27.65■■■□□ 2.02
LIMS2-212ENST00000466410 SUPT6HQ7KZ85 1726 aaKnown RBP27.64■■■□□ 2.02
LIMS2-212ENST00000466410 WDR62O43379 1518 aa27.63■■■□□ 2.01
LIMS2-212ENST00000466410 HIRIP3Q9BW71 556 aaPredicted RBP27.63■■■□□ 2.01
LIMS2-212ENST00000466410 EHBP1L1Q8N3D4 1523 aa27.63■■■□□ 2.01
LIMS2-212ENST00000466410 UACAQ9BZF9 1416 aa27.62■■■□□ 2.01
LIMS2-212ENST00000466410 SUPT16HQ9Y5B9 1047 aaKnown RBP27.61■■■□□ 2.01
LIMS2-212ENST00000466410 NAIPQ13075 1403 aa27.61■■■□□ 2.01
LIMS2-212ENST00000466410 ZNF608Q9ULD9 1512 aaPredicted RBP27.6■■■□□ 2.01
LIMS2-212ENST00000466410 MAGI3Q5TCQ9 1506 aa27.59■■■□□ 2.01
LIMS2-212ENST00000466410 UGGT2Q9NYU1 1516 aa27.57■■■□□ 2
LIMS2-212ENST00000466410 TONSLQ96HA7 1378 aa27.57■■■□□ 2
LIMS2-212ENST00000466410 ARHGEF11O15085 1522 aa27.55■■■□□ 2
LIMS2-212ENST00000466410 ADAMTS12P58397 1594 aa27.55■■■□□ 2
LIMS2-212ENST00000466410 ERCC6Q03468 1493 aa27.53■■■□□ 2
LIMS2-212ENST00000466410 IFT140Q96RY7 1462 aa27.53■■■□□ 2
LIMS2-212ENST00000466410 IQGAP2Q13576 1575 aa27.49■■□□□ 1.99
LIMS2-212ENST00000466410 HECW1Q76N89 1606 aa27.47■■□□□ 1.99
LIMS2-212ENST00000466410 RRP7BPQ9NSQ0 103 aa27.46■■□□□ 1.99
LIMS2-212ENST00000466410 EPRSP07814 1512 aaKnown RBP27.45■■□□□ 1.98
LIMS2-212ENST00000466410 CHIC2Q9UKJ5 165 aa27.45■■□□□ 1.98
LIMS2-212ENST00000466410 TCOF1Q13428 1488 aaKnown RBP27.44■■□□□ 1.98
LIMS2-212ENST00000466410 CDK13Q14004 1512 aaKnown RBP27.41■■□□□ 1.98
LIMS2-212ENST00000466410 EIF4G3O43432 1585 aaKnown RBP27.41■■□□□ 1.98
LIMS2-212ENST00000466410 ARID3CA6NKF2 412 aa27.39■■□□□ 1.98
LIMS2-212ENST00000466410 KDM5BQ9UGL1 1544 aa27.38■■□□□ 1.97
LIMS2-212ENST00000466410 ANP32CO43423 234 aa27.37■■□□□ 1.97
LIMS2-212ENST00000466410 GCC2Q8IWJ2 1684 aa27.36■■□□□ 1.97
LIMS2-212ENST00000466410 CCER2I3L3R5 266 aa27.35■■□□□ 1.97
LIMS2-212ENST00000466410 DENND4BO75064 1496 aaPredicted RBP27.34■■□□□ 1.97
LIMS2-212ENST00000466410 KDM6BO15054 1643 aa27.33■■□□□ 1.97
LIMS2-212ENST00000466410 TRIM52Q96A61 297 aa27.32■■□□□ 1.96
LIMS2-212ENST00000466410 MIA2Q96PC5 1412 aa27.32■■□□□ 1.96
LIMS2-212ENST00000466410 AKNAQ7Z591 1439 aa27.31■■□□□ 1.96
LIMS2-212ENST00000466410 GRIN2AQ12879 1464 aa27.24■■□□□ 1.95
LIMS2-212ENST00000466410 MPHOSPH9Q99550 1183 aa27.23■■□□□ 1.95
LIMS2-212ENST00000466410 DISP1Q96F81 1524 aa27.21■■□□□ 1.95
LIMS2-212ENST00000466410 KIAA0586Q9BVV6 1533 aa27.21■■□□□ 1.95
LIMS2-212ENST00000466410 KIAA0556O60303 1618 aa27.19■■□□□ 1.94
LIMS2-212ENST00000466410 HSPA5P11021 654 aaKnown RBP27.17■■□□□ 1.94
LIMS2-212ENST00000466410 FKBP8Q14318 412 aa27.17■■□□□ 1.94
LIMS2-212ENST00000466410 FOXD1Q16676 465 aa27.17■■□□□ 1.94
LIMS2-212ENST00000466410 NUP153P49790 1475 aaKnown RBP27.16■■□□□ 1.94
LIMS2-212ENST00000466410 BCANQ96GW7 911 aa27.16■■□□□ 1.94
LIMS2-212ENST00000466410 MAGI1Q96QZ7 1491 aaPredicted RBP27.16■■□□□ 1.94
LIMS2-212ENST00000466410 DAPK1P53355 1430 aa27.15■■□□□ 1.94
LIMS2-212ENST00000466410 ZNF644Q9H582 1327 aaPredicted RBP27.14■■□□□ 1.94
LIMS2-212ENST00000466410 WASHC2AQ641Q2 1341 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 205 ms