RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 NISCHQ9Y2I1 1504 aa40.24■■■■■ 4.03
LIMS2-212ENST00000466410 CCDC180Q9P1Z9 1646 aa34.42■■■■□ 3.1
LIMS2-212ENST00000466410 SHROOM4Q9ULL8 1493 aa34.31■■■■□ 3.08
LIMS2-212ENST00000466410 ZCCHC6Q5VYS8 1495 aaKnown RBP34.04■■■■□ 3.04
LIMS2-212ENST00000466410 SUPT5HO00267 1087 aaKnown RBP33.66■■■□□ 2.98
LIMS2-212ENST00000466410 DCAF8L2P0C7V8 631 aa33.34■■■□□ 2.93
LIMS2-212ENST00000466410 DCAF1Q9Y4B6 1507 aa33.01■■■□□ 2.88
LIMS2-212ENST00000466410 CHIC1Q5VXU3 224 aa32.75■■■□□ 2.83
LIMS2-212ENST00000466410 MYO15BQ96JP2 1530 aa32.63■■■□□ 2.81
LIMS2-212ENST00000466410 ABCC9O60706 1549 aa32.34■■■□□ 2.77
LIMS2-212ENST00000466410 SCRIBQ14160 1630 aa32.06■■■□□ 2.72
LIMS2-212ENST00000466410 NACADO15069 1562 aa31.93■■■□□ 2.7
LIMS2-212ENST00000466410 RSF1Q96T23 1441 aaPredicted RBP31.86■■■□□ 2.69
LIMS2-212ENST00000466410 LOC105371045A0A1W2PR82 267 aa31.78■■■□□ 2.68
LIMS2-212ENST00000466410 HRCP23327 699 aa31.74■■■□□ 2.67
LIMS2-212ENST00000466410 PCGF6Q9BYE7 350 aa31.73■■■□□ 2.67
LIMS2-212ENST00000466410 RB1CC1Q8TDY2 1594 aa31.54■■■□□ 2.64
LIMS2-212ENST00000466410 CECR2Q9BXF3 1484 aa31.41■■■□□ 2.62
LIMS2-212ENST00000466410 TRIM41Q8WV44 630 aa31.34■■■□□ 2.61
LIMS2-212ENST00000466410 MROH2BQ7Z745 1585 aa31.3■■■□□ 2.6
LIMS2-212ENST00000466410 UNC13AQ9UPW8 1703 aa31.15■■■□□ 2.58
LIMS2-212ENST00000466410 WIZO95785 1651 aa31.13■■■□□ 2.57
LIMS2-212ENST00000466410 TRIM26Q12899 539 aaPredicted RBP31.12■■■□□ 2.57
LIMS2-212ENST00000466410 PPARGC1BQ86YN6 1023 aaKnown RBP31.1■■■□□ 2.57
LIMS2-212ENST00000466410 FAM9AQ8IZU1 332 aaPredicted RBP31.1■■■□□ 2.57
LIMS2-212ENST00000466410 BAZ1AQ9NRL2 1556 aaPredicted RBP30.92■■■□□ 2.54
LIMS2-212ENST00000466410 EHMT2Q96KQ7 1210 aa30.82■■■□□ 2.52
LIMS2-212ENST00000466410 BICRAQ9NZM4 1560 aa30.76■■■□□ 2.51
LIMS2-212ENST00000466410 EIF4G1Q04637 1599 aaKnown RBP30.72■■■□□ 2.51
LIMS2-212ENST00000466410 PABPN1Q86U42 306 aaKnown RBP eCLIP30.72■■■□□ 2.51
LIMS2-212ENST00000466410 SMARCA4P51532 1647 aa30.64■■■□□ 2.5
LIMS2-212ENST00000466410 TOP2AP11388 1531 aaKnown RBP30.63■■■□□ 2.49
LIMS2-212ENST00000466410 CCDC88BA6NC98 1476 aa30.51■■■□□ 2.48
LIMS2-212ENST00000466410 SMARCA2P51531 1590 aa30.48■■■□□ 2.47
LIMS2-212ENST00000466410 ABCC8Q09428 1581 aa30.44■■■□□ 2.46
LIMS2-212ENST00000466410 ZEB1P37275 1124 aaPredicted RBP30.42■■■□□ 2.46
LIMS2-212ENST00000466410 SOGA1O94964 1423 aa30.16■■■□□ 2.42
LIMS2-212ENST00000466410 PEG3Q9GZU2 1588 aa30.11■■■□□ 2.41
LIMS2-212ENST00000466410 CEP162Q5TB80 1403 aa30.02■■■□□ 2.4
LIMS2-212ENST00000466410 RUSC2Q8N2Y8 1516 aa30.02■■■□□ 2.4
LIMS2-212ENST00000466410 WRNQ14191 1432 aaPredicted RBP eCLIP29.99■■■□□ 2.39
LIMS2-212ENST00000466410 EEA1Q15075 1411 aa29.98■■■□□ 2.39
LIMS2-212ENST00000466410 ATAD2BQ9ULI0 1458 aa29.98■■■□□ 2.39
LIMS2-212ENST00000466410 CSRNP3Q8WYN3 585 aa29.98■■■□□ 2.39
LIMS2-212ENST00000466410 TNIKQ9UKE5 1360 aa29.97■■■□□ 2.39
LIMS2-212ENST00000466410 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.89■■■□□ 2.38
LIMS2-212ENST00000466410 UBTFP17480 764 aaKnown RBP29.86■■■□□ 2.37
LIMS2-212ENST00000466410 BAZ1BQ9UIG0 1483 aaKnown RBP29.84■■■□□ 2.37
LIMS2-212ENST00000466410 TTBK1Q5TCY1 1321 aaPredicted RBP29.84■■■□□ 2.37
LIMS2-212ENST00000466410 CCER1Q8TC90 406 aaPredicted RBP29.8■■■□□ 2.36
LIMS2-212ENST00000466410 GOLGA3Q08378 1498 aa29.79■■■□□ 2.36
LIMS2-212ENST00000466410 SYNJ1O43426 1573 aa29.78■■■□□ 2.36
LIMS2-212ENST00000466410 CEP164Q9UPV0 1460 aa29.62■■■□□ 2.33
LIMS2-212ENST00000466410 KIF21BO75037 1637 aa29.59■■■□□ 2.33
LIMS2-212ENST00000466410 NCAPD3P42695 1498 aa29.53■■■□□ 2.32
LIMS2-212ENST00000466410 HMGXB3Q12766 1538 aa29.5■■■□□ 2.31
LIMS2-212ENST00000466410 CLIP1P30622 1438 aa29.46■■■□□ 2.31
LIMS2-212ENST00000466410 RAPGEF2Q9Y4G8 1499 aa29.43■■■□□ 2.3
LIMS2-212ENST00000466410 TOP2BQ02880 1626 aa29.41■■■□□ 2.3
LIMS2-212ENST00000466410 VPS8Q8N3P4 1428 aa29.33■■■□□ 2.29
LIMS2-212ENST00000466410 BIVM-ERCC5R4GMW8 1640 aa29.3■■■□□ 2.28
LIMS2-212ENST00000466410 RANGAP1P46060 587 aaPredicted RBP29.25■■■□□ 2.27
LIMS2-212ENST00000466410 SCAF1Q9H7N4 1312 aaKnown RBP29.25■■■□□ 2.27
LIMS2-212ENST00000466410 DIEXFQ68CQ4 756 aaKnown RBP29.21■■■□□ 2.27
LIMS2-212ENST00000466410 HNRNPUL2Q1KMD3 747 aaKnown RBP29.2■■■□□ 2.27
LIMS2-212ENST00000466410 CC2D2AQ9P2K1 1620 aa29.18■■■□□ 2.26
LIMS2-212ENST00000466410 APLP2Q06481 763 aa29.17■■■□□ 2.26
LIMS2-212ENST00000466410 PRXQ9BXM0 1461 aa29.13■■■□□ 2.25
LIMS2-212ENST00000466410 CUX1P39880 1505 aa29.13■■■□□ 2.25
LIMS2-212ENST00000466410 ERICH3Q5RHP9 1530 aa29.11■■■□□ 2.25
LIMS2-212ENST00000466410 CFTRP13569 1480 aa29.1■■■□□ 2.25
LIMS2-212ENST00000466410 ZNF316A6NFI3 1004 aaPredicted RBP29.01■■■□□ 2.23
LIMS2-212ENST00000466410 ARAP1Q96P48 1450 aa28.99■■■□□ 2.23
LIMS2-212ENST00000466410 KIF27Q86VH2 1401 aa28.99■■■□□ 2.23
LIMS2-212ENST00000466410 ACIN1Q9UKV3 1341 aaKnown RBP28.97■■■□□ 2.23
LIMS2-212ENST00000466410 NEUROD1Q13562 356 aa28.95■■■□□ 2.22
LIMS2-212ENST00000466410 PRDM2Q13029 1718 aa28.93■■■□□ 2.22
LIMS2-212ENST00000466410 CADPSQ9ULU8 1353 aa28.88■■■□□ 2.21
LIMS2-212ENST00000466410 KANK4Q5T7N3 995 aaPredicted RBP28.85■■■□□ 2.21
LIMS2-212ENST00000466410 CENPBP07199 599 aaPredicted RBP28.78■■■□□ 2.2
LIMS2-212ENST00000466410 ARHGAP35Q9NRY4 1499 aa28.75■■■□□ 2.19
LIMS2-212ENST00000466410 CUX2O14529 1486 aa28.72■■■□□ 2.19
LIMS2-212ENST00000466410 IGF1RP08069 1367 aa28.69■■■□□ 2.18
LIMS2-212ENST00000466410 RRBP1Q9P2E9 1410 aaKnown RBP28.65■■■□□ 2.18
LIMS2-212ENST00000466410 DHX57Q6P158 1386 aaKnown RBP28.65■■■□□ 2.18
LIMS2-212ENST00000466410 NESP48681 1621 aa28.64■■■□□ 2.18
LIMS2-212ENST00000466410 GTF3C3Q9Y5Q9 886 aa28.63■■■□□ 2.17
LIMS2-212ENST00000466410 MIER1Q8N108 512 aa28.6■■■□□ 2.17
LIMS2-212ENST00000466410 FGD5Q6ZNL6 1462 aa28.6■■■□□ 2.17
LIMS2-212ENST00000466410 FANCD2Q9BXW9 1451 aa28.6■■■□□ 2.17
LIMS2-212ENST00000466410 CLSPNQ9HAW4 1339 aa28.6■■■□□ 2.17
LIMS2-212ENST00000466410 DNAJC5BQ9UF47 199 aa28.59■■■□□ 2.17
LIMS2-212ENST00000466410 CARMIL1Q5VZK9 1371 aa28.56■■■□□ 2.16
LIMS2-212ENST00000466410 PELP1Q8IZL8 1130 aaKnown RBP28.55■■■□□ 2.16
LIMS2-212ENST00000466410 CCNB3Q8WWL7 1395 aa28.54■■■□□ 2.16
LIMS2-212ENST00000466410 YTHDC1Q96MU7 727 aaKnown RBP28.52■■■□□ 2.16
LIMS2-212ENST00000466410 ITGAEP38570 1179 aa28.43■■■□□ 2.14
LIMS2-212ENST00000466410 TIAM1Q13009 1591 aa28.42■■■□□ 2.14
LIMS2-212ENST00000466410 DNMBPQ6XZF7 1577 aa28.4■■■□□ 2.14
LIMS2-212ENST00000466410 LAMC3Q9Y6N6 1575 aa28.39■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms