RNA–Protein interactions for RNA: ENST00000465980.1

ATG3-203, Transcript of autophagy related 3, humanhuman

TSL 2

Gene ATG3, Length 560 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-203ENST00000465980 CFTRP13569 1480 aa17.25■□□□□ 0.35
ATG3-203ENST00000465980 PRDM2Q13029 1718 aa17.25■□□□□ 0.35
ATG3-203ENST00000465980 PIP4P2Q8N4L2 257 aa17.25■□□□□ 0.35
ATG3-203ENST00000465980 MKRN4PQ13434 485 aaPredicted RBP17.2■□□□□ 0.34
ATG3-203ENST00000465980 FXR2P51116 673 aaKnown RBP eCLIP17.18■□□□□ 0.34
ATG3-203ENST00000465980 CCDC88BA6NC98 1476 aa17.18■□□□□ 0.34
ATG3-203ENST00000465980 URB2Q14146 1524 aaKnown RBP17.13■□□□□ 0.33
ATG3-203ENST00000465980 SP7Q8TDD2 431 aaPredicted RBP17.07■□□□□ 0.32
ATG3-203ENST00000465980 SSUH2Q9Y2M2 353 aa17.07■□□□□ 0.32
ATG3-203ENST00000465980 CSRNP3Q8WYN3 585 aa17.05■□□□□ 0.32
ATG3-203ENST00000465980 ZNF692Q9BU19 519 aaPredicted RBP17.05■□□□□ 0.32
ATG3-203ENST00000465980 SPDYE1Q8NFV5 336 aaPredicted RBP17.02■□□□□ 0.32
ATG3-203ENST00000465980 TOPBP1Q92547 1522 aa16.96■□□□□ 0.31
ATG3-203ENST00000465980 HAX1O00165 279 aa16.94■□□□□ 0.3
ATG3-203ENST00000465980 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
ATG3-203ENST00000465980 DNMBPQ6XZF7 1577 aa16.92■□□□□ 0.3
ATG3-203ENST00000465980 IFT140Q96RY7 1462 aa16.9■□□□□ 0.3
ATG3-203ENST00000465980 ZNF608Q9ULD9 1512 aaPredicted RBP16.9■□□□□ 0.3
ATG3-203ENST00000465980 ABCC8Q09428 1581 aa16.88■□□□□ 0.29
ATG3-203ENST00000465980 EIF4G3O43432 1585 aaKnown RBP16.85■□□□□ 0.29
ATG3-203ENST00000465980 SUPT5HO00267 1087 aaKnown RBP16.85■□□□□ 0.29
ATG3-203ENST00000465980 PRKAR2AP13861 404 aaKnown RBP16.83■□□□□ 0.28
ATG3-203ENST00000465980 TARBP1Q13395 1621 aaKnown RBP16.82■□□□□ 0.28
ATG3-203ENST00000465980 TRIM41Q8WV44 630 aa16.8■□□□□ 0.28
ATG3-203ENST00000465980 POLA1P09884 1462 aaPredicted RBP16.8■□□□□ 0.28
ATG3-203ENST00000465980 CHD1O14646 1710 aa16.76■□□□□ 0.27
ATG3-203ENST00000465980 EHMT2Q96KQ7 1210 aa16.75■□□□□ 0.27
ATG3-203ENST00000465980 AQRO60306 1485 aaKnown RBP eCLIP16.74■□□□□ 0.27
ATG3-203ENST00000465980 RAD54L2Q9Y4B4 1467 aa16.74■□□□□ 0.27
ATG3-203ENST00000465980 CUX1P39880 1505 aa16.74■□□□□ 0.27
ATG3-203ENST00000465980 FGD5Q6ZNL6 1462 aa16.72■□□□□ 0.27
ATG3-203ENST00000465980 SOGA1O94964 1423 aa16.7■□□□□ 0.26
ATG3-203ENST00000465980 RIMBP3CA6NJZ7 1639 aa16.67■□□□□ 0.26
ATG3-203ENST00000465980 RIMBP3BA6NNM3 1639 aa16.67■□□□□ 0.26
ATG3-203ENST00000465980 RIMBP3Q9UFD9 1639 aa16.67■□□□□ 0.26
ATG3-203ENST00000465980 PRR29P0C7W0 189 aa16.67■□□□□ 0.26
ATG3-203ENST00000465980 EVX2Q03828 476 aa16.67■□□□□ 0.26
ATG3-203ENST00000465980 TDRD9Q8NDG6 1382 aaKnown RBP16.66■□□□□ 0.26
ATG3-203ENST00000465980 WDR97A6NE52 1622 aa16.65■□□□□ 0.26
ATG3-203ENST00000465980 C19orf67A6NJJ6 358 aa16.63■□□□□ 0.25
ATG3-203ENST00000465980 SNAPC4Q5SXM2 1469 aa16.61■□□□□ 0.25
ATG3-203ENST00000465980 PBRM1Q86U86 1689 aa16.6■□□□□ 0.25
ATG3-203ENST00000465980 ARHGEF11O15085 1522 aa16.6■□□□□ 0.25
ATG3-203ENST00000465980 CHADLQ6NUI6 762 aa16.58■□□□□ 0.24
ATG3-203ENST00000465980 GRIN2BQ13224 1484 aa16.54■□□□□ 0.24
ATG3-203ENST00000465980 MAGI1Q96QZ7 1491 aaPredicted RBP16.53■□□□□ 0.24
ATG3-203ENST00000465980 BIVM-ERCC5R4GMW8 1640 aa16.52■□□□□ 0.24
ATG3-203ENST00000465980 ABCA5Q8WWZ7 1642 aa16.52■□□□□ 0.23
ATG3-203ENST00000465980 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
ATG3-203ENST00000465980 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
ATG3-203ENST00000465980 ABCA10Q8WWZ4 1543 aa16.5■□□□□ 0.23
ATG3-203ENST00000465980 TOP2BQ02880 1626 aa16.5■□□□□ 0.23
ATG3-203ENST00000465980 WRNQ14191 1432 aaPredicted RBP eCLIP16.48■□□□□ 0.23
ATG3-203ENST00000465980 CHMP7Q8WUX9 453 aaPredicted RBP16.48■□□□□ 0.23
ATG3-203ENST00000465980 SYNJ2O15056 1496 aa16.47■□□□□ 0.23
ATG3-203ENST00000465980 CLASP1Q7Z460 1538 aa16.46■□□□□ 0.23
ATG3-203ENST00000465980 ARAP1Q96P48 1450 aa16.45■□□□□ 0.22
ATG3-203ENST00000465980 CYB5RLQ6IPT4 315 aa16.44■□□□□ 0.22
ATG3-203ENST00000465980 STAG3Q9UJ98 1225 aa16.41■□□□□ 0.22
ATG3-203ENST00000465980 ADAMTS12P58397 1594 aa16.39■□□□□ 0.21
ATG3-203ENST00000465980 FARP1Q9Y4F1 1045 aaPredicted RBP16.39■□□□□ 0.21
ATG3-203ENST00000465980 SPDYE4A6NLX3 237 aa16.38■□□□□ 0.21
ATG3-203ENST00000465980 GABBR2O75899 941 aa16.36■□□□□ 0.21
ATG3-203ENST00000465980 GRIN2AQ12879 1464 aa16.35■□□□□ 0.21
ATG3-203ENST00000465980 CEP170Q5SW79 1584 aa16.31■□□□□ 0.2
ATG3-203ENST00000465980 ERICH3Q5RHP9 1530 aa16.31■□□□□ 0.2
ATG3-203ENST00000465980 CD44P16070 742 aaKnown RBP16.3■□□□□ 0.2
ATG3-203ENST00000465980 FHAD1B1AJZ9 1412 aa16.28■□□□□ 0.2
ATG3-203ENST00000465980 ERCC6L2Q5T890 1561 aa16.26■□□□□ 0.19
ATG3-203ENST00000465980 CLCN6P51797 869 aa16.25■□□□□ 0.19
ATG3-203ENST00000465980 NUP160Q12769 1436 aa16.25■□□□□ 0.19
ATG3-203ENST00000465980 CREBZFQ9NS37 354 aa16.24■□□□□ 0.19
ATG3-203ENST00000465980 SHROOM2Q13796 1616 aa16.21■□□□□ 0.19
ATG3-203ENST00000465980 RUSC2Q8N2Y8 1516 aa16.16■□□□□ 0.18
ATG3-203ENST00000465980 CUL7Q14999 1698 aa16.14■□□□□ 0.18
ATG3-203ENST00000465980 KIF27Q86VH2 1401 aa16.14■□□□□ 0.17
ATG3-203ENST00000465980 PRG4Q92954 1404 aaPredicted RBP16.11■□□□□ 0.17
ATG3-203ENST00000465980 ZNF579Q8NAF0 562 aaKnown RBP16.1■□□□□ 0.17
ATG3-203ENST00000465980 IGF1RP08069 1367 aa16.1■□□□□ 0.17
ATG3-203ENST00000465980 JPH4Q96JJ6 628 aa16.07■□□□□ 0.16
ATG3-203ENST00000465980 ZRANB1Q9UGI0 708 aa16.05■□□□□ 0.16
ATG3-203ENST00000465980 PROM2Q8N271 834 aa16.04■□□□□ 0.16
ATG3-203ENST00000465980 KIAA0586Q9BVV6 1533 aa16.02■□□□□ 0.15
ATG3-203ENST00000465980 CARMIL1Q5VZK9 1371 aa16.01■□□□□ 0.15
ATG3-203ENST00000465980 NPM1P06748 294 aaKnown RBP eCLIP16■□□□□ 0.15
ATG3-203ENST00000465980 KIF13AQ9H1H9 1805 aa15.99■□□□□ 0.15
ATG3-203ENST00000465980 POTEIP0CG38 1075 aa15.99■□□□□ 0.15
ATG3-203ENST00000465980 LHX8Q68G74 356 aa15.99■□□□□ 0.15
ATG3-203ENST00000465980 PAK3O75914 559 aaPredicted RBP15.97■□□□□ 0.15
ATG3-203ENST00000465980 MNX1P50219 401 aaPredicted RBP15.96■□□□□ 0.15
ATG3-203ENST00000465980 ADCY10Q96PN6 1610 aa15.96■□□□□ 0.15
ATG3-203ENST00000465980 IQGAP2Q13576 1575 aa15.95■□□□□ 0.14
ATG3-203ENST00000465980 TTBK1Q5TCY1 1321 aaPredicted RBP15.93■□□□□ 0.14
ATG3-203ENST00000465980 DCBLD2Q96PD2 775 aa15.92■□□□□ 0.14
ATG3-203ENST00000465980 RAPGEF2Q9Y4G8 1499 aa15.9■□□□□ 0.14
ATG3-203ENST00000465980 CTTNBP2Q8WZ74 1663 aa15.88■□□□□ 0.13
ATG3-203ENST00000465980 CARMIL2Q6F5E8 1435 aa15.86■□□□□ 0.13
ATG3-203ENST00000465980 TSPOAP1O95153 1857 aa15.86■□□□□ 0.13
ATG3-203ENST00000465980 PTPRGP23470 1445 aa15.85■□□□□ 0.13
ATG3-203ENST00000465980 MAPKBP1O60336 1514 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms