RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 FHOD3Q2V2M9 1422 aa22.12■■□□□ 1.13
LMNB1-203ENST00000460265 ARHGAP35Q9NRY4 1499 aa22.12■■□□□ 1.13
LMNB1-203ENST00000460265 HIRIP3Q9BW71 556 aaPredicted RBP22.11■■□□□ 1.13
LMNB1-203ENST00000460265 CHIC2Q9UKJ5 165 aa22.11■■□□□ 1.13
LMNB1-203ENST00000460265 SIN3AQ96ST3 1273 aa22.1■■□□□ 1.13
LMNB1-203ENST00000460265 ERICH3Q5RHP9 1530 aa22.1■■□□□ 1.13
LMNB1-203ENST00000460265 BIVM-ERCC5R4GMW8 1640 aa22.09■■□□□ 1.13
LMNB1-203ENST00000460265 MTUS2Q5JR59 1369 aa22.08■■□□□ 1.12
LMNB1-203ENST00000460265 TRIM52Q96A61 297 aa22.07■■□□□ 1.12
LMNB1-203ENST00000460265 DHX57Q6P158 1386 aaKnown RBP22.02■■□□□ 1.12
LMNB1-203ENST00000460265 FHAD1B1AJZ9 1412 aa21.99■■□□□ 1.11
LMNB1-203ENST00000460265 RAB3GAP2Q9H2M9 1393 aa21.98■■□□□ 1.11
LMNB1-203ENST00000460265 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
LMNB1-203ENST00000460265 RRP7BPQ9NSQ0 103 aa21.97■■□□□ 1.11
LMNB1-203ENST00000460265 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
LMNB1-203ENST00000460265 DDX10Q13206 875 aaKnown RBP21.94■■□□□ 1.1
LMNB1-203ENST00000460265 TOPBP1Q92547 1522 aa21.94■■□□□ 1.1
LMNB1-203ENST00000460265 PHLDB1Q86UU1 1377 aa21.92■■□□□ 1.1
LMNB1-203ENST00000460265 ZNF777Q9ULD5 760 aaPredicted RBP21.89■■□□□ 1.09
LMNB1-203ENST00000460265 CNGB1Q14028 1251 aaPredicted RBP21.88■■□□□ 1.09
LMNB1-203ENST00000460265 CLSPNQ9HAW4 1339 aa21.87■■□□□ 1.09
LMNB1-203ENST00000460265 SETD5Q9C0A6 1442 aa21.85■■□□□ 1.09
LMNB1-203ENST00000460265 CHMP7Q8WUX9 453 aaPredicted RBP21.85■■□□□ 1.09
LMNB1-203ENST00000460265 TSHZ2Q9NRE2 1034 aa21.84■■□□□ 1.09
LMNB1-203ENST00000460265 SUPT16HQ9Y5B9 1047 aaKnown RBP21.82■■□□□ 1.08
LMNB1-203ENST00000460265 GAPVD1Q14C86 1478 aa21.82■■□□□ 1.08
LMNB1-203ENST00000460265 PRKCSHP14314 528 aaPredicted RBP21.81■■□□□ 1.08
LMNB1-203ENST00000460265 RRBP1Q9P2E9 1410 aaKnown RBP21.81■■□□□ 1.08
LMNB1-203ENST00000460265 AQRO60306 1485 aaKnown RBP eCLIP21.8■■□□□ 1.086e-7■■■■■ 27.9
LMNB1-203ENST00000460265 LRRC9Q6ZRR7 1453 aa21.8■■□□□ 1.08
LMNB1-203ENST00000460265 TONSLQ96HA7 1378 aa21.78■■□□□ 1.08
LMNB1-203ENST00000460265 DNMBPQ6XZF7 1577 aa21.78■■□□□ 1.08
LMNB1-203ENST00000460265 POLR3GLQ9BT43 218 aa21.78■■□□□ 1.08
LMNB1-203ENST00000460265 FMN1Q68DA7 1419 aa21.77■■□□□ 1.07
LMNB1-203ENST00000460265 URB2Q14146 1524 aaKnown RBP21.75■■□□□ 1.07
LMNB1-203ENST00000460265 ABCA10Q8WWZ4 1543 aa21.74■■□□□ 1.07
LMNB1-203ENST00000460265 ZNF326Q5BKZ1 582 aaKnown RBP21.71■■□□□ 1.07
LMNB1-203ENST00000460265 ERCC6Q03468 1493 aa21.7■■□□□ 1.06
LMNB1-203ENST00000460265 TIAM1Q13009 1591 aa21.7■■□□□ 1.06
LMNB1-203ENST00000460265 FOXD1Q16676 465 aa21.68■■□□□ 1.06
LMNB1-203ENST00000460265 CDK11AQ9UQ88 783 aaPredicted RBP21.68■■□□□ 1.06
LMNB1-203ENST00000460265 KCNH8Q96L42 1107 aa21.66■■□□□ 1.06
LMNB1-203ENST00000460265 ANP32CO43423 234 aa21.64■■□□□ 1.06
LMNB1-203ENST00000460265 BCANQ96GW7 911 aa21.63■■□□□ 1.05
LMNB1-203ENST00000460265 CASKIN1Q8WXD9 1431 aa21.62■■□□□ 1.05
LMNB1-203ENST00000460265 PCF11O94913 1555 aaKnown RBP21.62■■□□□ 1.05
LMNB1-203ENST00000460265 LAMC3Q9Y6N6 1575 aa21.58■■□□□ 1.05
LMNB1-203ENST00000460265 PPP1R15AO75807 674 aaPredicted RBP21.57■■□□□ 1.04
LMNB1-203ENST00000460265 FGD6Q6ZV73 1430 aa21.56■■□□□ 1.04
LMNB1-203ENST00000460265 CFDP1Q9UEE9 299 aaPredicted RBP21.55■■□□□ 1.04
LMNB1-203ENST00000460265 SLC4A1APQ9BWU0 796 aaKnown RBP21.54■■□□□ 1.04
LMNB1-203ENST00000460265 FYCO1Q9BQS8 1478 aa21.53■■□□□ 1.04
LMNB1-203ENST00000460265 PRDM2Q13029 1718 aa21.53■■□□□ 1.04
LMNB1-203ENST00000460265 ZNF644Q9H582 1327 aaPredicted RBP21.53■■□□□ 1.04
LMNB1-203ENST00000460265 NCOA2Q15596 1464 aa21.49■■□□□ 1.03
LMNB1-203ENST00000460265 NEFLP07196 543 aa21.48■■□□□ 1.03
LMNB1-203ENST00000460265 ERICH6Q7L0X2 663 aa21.47■■□□□ 1.03
LMNB1-203ENST00000460265 EFCAB5A4FU69 1503 aa21.46■■□□□ 1.03
LMNB1-203ENST00000460265 PLEKHD1A6NEE1 506 aa21.46■■□□□ 1.03
LMNB1-203ENST00000460265 JPH4Q96JJ6 628 aa21.45■■□□□ 1.02
LMNB1-203ENST00000460265 ZNF608Q9ULD9 1512 aaPredicted RBP21.45■■□□□ 1.02
LMNB1-203ENST00000460265 CCDC18Q5T9S5 1454 aa21.45■■□□□ 1.02
LMNB1-203ENST00000460265 MYOM3Q5VTT5 1437 aa21.44■■□□□ 1.02
LMNB1-203ENST00000460265 MPHOSPH9Q99550 1183 aa21.44■■□□□ 1.02
LMNB1-203ENST00000460265 MYT1LQ9UL68 1186 aa21.44■■□□□ 1.02
LMNB1-203ENST00000460265 CUL7Q14999 1698 aa21.42■■□□□ 1.02
LMNB1-203ENST00000460265 MAP3K1Q13233 1512 aa21.41■■□□□ 1.02
LMNB1-203ENST00000460265 MRC2Q9UBG0 1479 aa21.4■■□□□ 1.02
LMNB1-203ENST00000460265 GRIN2BQ13224 1484 aa21.4■■□□□ 1.02
LMNB1-203ENST00000460265 TIMELESSQ9UNS1 1208 aa21.4■■□□□ 1.02
LMNB1-203ENST00000460265 KDM2AQ9Y2K7 1162 aa21.39■■□□□ 1.01
LMNB1-203ENST00000460265 KIF21AQ7Z4S6 1674 aa21.39■■□□□ 1.01
LMNB1-203ENST00000460265 EIF4G2P78344 907 aaKnown RBP eCLIP21.37■■□□□ 1.015e-6■■□□□ 14.3
LMNB1-203ENST00000460265 TSPY4P0CV99 314 aa21.37■■□□□ 1.01
LMNB1-203ENST00000460265 TSPY10P0CW01 314 aa21.37■■□□□ 1.01
LMNB1-203ENST00000460265 PTPRKQ15262 1439 aa21.37■■□□□ 1.01
LMNB1-203ENST00000460265 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.37■■□□□ 1.015e-7■■■□□ 19
LMNB1-203ENST00000460265 CDK13Q14004 1512 aaKnown RBP21.36■■□□□ 1.01
LMNB1-203ENST00000460265 WDR97A6NE52 1622 aa21.36■■□□□ 1.01
LMNB1-203ENST00000460265 FKBP8Q14318 412 aa21.36■■□□□ 1.01
LMNB1-203ENST00000460265 L3MBTL2Q969R5 705 aa21.36■■□□□ 1.01
LMNB1-203ENST00000460265 RBM19Q9Y4C8 960 aaKnown RBP21.36■■□□□ 1.01
LMNB1-203ENST00000460265 HSPA5P11021 654 aaKnown RBP21.34■■□□□ 1.01
LMNB1-203ENST00000460265 HNRNPUQ00839 825 aaKnown RBP eCLIP21.34■■□□□ 1.01
LMNB1-203ENST00000460265 MAPKBP1O60336 1514 aa21.33■■□□□ 1.01
LMNB1-203ENST00000460265 SENP3-EIF4A1A0A087X0R7 540 aa21.32■■□□□ 1
LMNB1-203ENST00000460265 FAM9BQ8IZU0 186 aa21.31■■□□□ 1
LMNB1-203ENST00000460265 SNAPC4Q5SXM2 1469 aa21.31■■□□□ 1
LMNB1-203ENST00000460265 UACAQ9BZF9 1416 aa21.28■■□□□ 1
LMNB1-203ENST00000460265 NAIPQ13075 1403 aa21.28■■□□□ 1
LMNB1-203ENST00000460265 CTTNBP2Q8WZ74 1663 aa21.27■■□□□ 1
LMNB1-203ENST00000460265 EPRSP07814 1512 aaKnown RBP21.26■□□□□ 0.99
LMNB1-203ENST00000460265 HFM1A2PYH4 1435 aa21.25■□□□□ 0.99
LMNB1-203ENST00000460265 HNRNPMP52272 730 aaKnown RBP eCLIP21.25■□□□□ 0.99
LMNB1-203ENST00000460265 IFT140Q96RY7 1462 aa21.25■□□□□ 0.99
LMNB1-203ENST00000460265 IQGAP2Q13576 1575 aa21.25■□□□□ 0.99
LMNB1-203ENST00000460265 PKD2Q13563 968 aa21.24■□□□□ 0.99
LMNB1-203ENST00000460265 RGL3Q3MIN7 710 aa21.23■□□□□ 0.99
LMNB1-203ENST00000460265 CARMIL2Q6F5E8 1435 aa21.23■□□□□ 0.99
LMNB1-203ENST00000460265 PRG4Q92954 1404 aaPredicted RBP21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms