RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 NOP58Q9Y2X3 529 aaKnown RBP2.99□□□□□ -1.93
USP53-202ENST00000450251 L1TD1Q5T7N2 865 aaKnown RBP2.98□□□□□ -1.93
USP53-202ENST00000450251 USP35Q9P2H5 1018 aa2.98□□□□□ -1.93
USP53-202ENST00000450251 CDK11BP21127 795 aaKnown RBP2.98□□□□□ -1.93
USP53-202ENST00000450251 PODXL2Q9NZ53 605 aa2.98□□□□□ -1.93
USP53-202ENST00000450251 HSP90AA1P07900 732 aaKnown RBP2.98□□□□□ -1.93
USP53-202ENST00000450251 UNC13AQ9UPW8 1703 aa2.98□□□□□ -1.93
USP53-202ENST00000450251 FANCIQ9NVI1 1328 aa2.98□□□□□ -1.93
USP53-202ENST00000450251 LAMC3Q9Y6N6 1575 aa2.98□□□□□ -1.93
USP53-202ENST00000450251 MKRN4PQ13434 485 aaPredicted RBP2.98□□□□□ -1.93
USP53-202ENST00000450251 SUPT16HQ9Y5B9 1047 aaKnown RBP2.98□□□□□ -1.93
USP53-202ENST00000450251 FKBP8Q14318 412 aa2.97□□□□□ -1.93
USP53-202ENST00000450251 PTMSP20962 102 aa2.97□□□□□ -1.93
USP53-202ENST00000450251 CECR2Q9BXF3 1484 aa2.97□□□□□ -1.93
USP53-202ENST00000450251 SLC4A1APQ9BWU0 796 aaKnown RBP2.97□□□□□ -1.93
USP53-202ENST00000450251 NEFMP07197 916 aa2.97□□□□□ -1.93
USP53-202ENST00000450251 LAS1LQ9Y4W2 734 aaKnown RBP2.96□□□□□ -1.94
USP53-202ENST00000450251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP2.96□□□□□ -1.94
USP53-202ENST00000450251 BCANQ96GW7 911 aa2.96□□□□□ -1.94
USP53-202ENST00000450251 TSHZ2Q9NRE2 1034 aa2.95□□□□□ -1.94
USP53-202ENST00000450251 NBR1Q14596 966 aa2.95□□□□□ -1.94
USP53-202ENST00000450251 EEA1Q15075 1411 aa2.95□□□□□ -1.94
USP53-202ENST00000450251 CC2D2AQ9P2K1 1620 aa2.95□□□□□ -1.94
USP53-202ENST00000450251 NAP1L5Q96NT1 182 aaPredicted RBP2.94□□□□□ -1.94
USP53-202ENST00000450251 CNGB1Q14028 1251 aaPredicted RBP2.94□□□□□ -1.94
USP53-202ENST00000450251 BECN1Q14457 450 aa2.94□□□□□ -1.94
USP53-202ENST00000450251 BAZ1AQ9NRL2 1556 aaPredicted RBP2.94□□□□□ -1.94
USP53-202ENST00000450251 RBM19Q9Y4C8 960 aaKnown RBP2.94□□□□□ -1.94
USP53-202ENST00000450251 MTERF4Q7Z6M4 381 aaKnown RBP2.93□□□□□ -1.94
USP53-202ENST00000450251 MAP7D2Q96T17 732 aa2.93□□□□□ -1.94
USP53-202ENST00000450251 UPF2Q9HAU5 1272 aaKnown RBP2.93□□□□□ -1.94
USP53-202ENST00000450251 PPP4R2Q9NY27 417 aa2.93□□□□□ -1.94
USP53-202ENST00000450251 HSP90AA2PQ14568 343 aaPredicted RBP2.93□□□□□ -1.94
USP53-202ENST00000450251 CCDC136Q96JN2 1154 aa2.93□□□□□ -1.94
USP53-202ENST00000450251 ATAD2BQ9ULI0 1458 aa2.92□□□□□ -1.94
USP53-202ENST00000450251 ABCC8Q09428 1581 aa2.92□□□□□ -1.94
USP53-202ENST00000450251 TAF3Q5VWG9 929 aa2.92□□□□□ -1.94
USP53-202ENST00000450251 RSF1Q96T23 1441 aaPredicted RBP2.91□□□□□ -1.94
USP53-202ENST00000450251 CCER2I3L3R5 266 aa2.91□□□□□ -1.94
USP53-202ENST00000450251 UBTFP17480 764 aaKnown RBP2.91□□□□□ -1.94
USP53-202ENST00000450251 CALRP27797 417 aaKnown RBP2.91□□□□□ -1.94
USP53-202ENST00000450251 RRP9O43818 475 aaKnown RBP2.91□□□□□ -1.94
USP53-202ENST00000450251 MIER1Q8N108 512 aa2.91□□□□□ -1.94
USP53-202ENST00000450251 PNNQ9H307 717 aaKnown RBP2.91□□□□□ -1.94
USP53-202ENST00000450251 ARXQ96QS3 562 aa2.9□□□□□ -1.94
USP53-202ENST00000450251 LOC105371045A0A1W2PR82 267 aa2.9□□□□□ -1.94
USP53-202ENST00000450251 TPM2P07951 284 aa2.9□□□□□ -1.94
USP53-202ENST00000450251 HMGB1P09429 215 aaKnown RBP2.9□□□□□ -1.95
USP53-202ENST00000450251 VSIG10Q8N0Z9 540 aa2.9□□□□□ -1.95
USP53-202ENST00000450251 FAM43AQ8N2R8 423 aa2.9□□□□□ -1.95
USP53-202ENST00000450251 WDR62O43379 1518 aa2.9□□□□□ -1.95
USP53-202ENST00000450251 PDS5BQ9NTI5 1447 aa2.9□□□□□ -1.95
USP53-202ENST00000450251 GOLGA6L22H0YM25 854 aa2.9□□□□□ -1.95
USP53-202ENST00000450251 A0A0U1RQG5 324 aaPredicted RBP2.89□□□□□ -1.95
USP53-202ENST00000450251 IPO9Q96P70 1041 aaKnown RBP2.89□□□□□ -1.95
USP53-202ENST00000450251 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.89□□□□□ -1.95
USP53-202ENST00000450251 THOC2Q8NI27 1593 aaKnown RBP2.89□□□□□ -1.95
USP53-202ENST00000450251 NPM2Q86SE8 214 aaKnown RBP2.89□□□□□ -1.95
USP53-202ENST00000450251 GOLGA6L3A6NEY3 463 aa2.88□□□□□ -1.95
USP53-202ENST00000450251 MSNP26038 577 aaKnown RBP2.88□□□□□ -1.95
USP53-202ENST00000450251 CHAF1AQ13111 956 aaPredicted RBP2.88□□□□□ -1.95
USP53-202ENST00000450251 HOMEZQ8IX15 550 aa2.88□□□□□ -1.95
USP53-202ENST00000450251 CANXP27824 592 aaKnown RBP2.88□□□□□ -1.95
USP53-202ENST00000450251 CFTRP13569 1480 aa2.88□□□□□ -1.95
USP53-202ENST00000450251 PDE4CQ08493 712 aa2.88□□□□□ -1.95
USP53-202ENST00000450251 TAF7LQ5H9L4 462 aa2.88□□□□□ -1.95
USP53-202ENST00000450251 FOXD4L1Q9NU39 408 aa2.87□□□□□ -1.95
USP53-202ENST00000450251 ZBTB4Q9P1Z0 1013 aaPredicted RBP2.87□□□□□ -1.95
USP53-202ENST00000450251 HNRNPUL2Q1KMD3 747 aaKnown RBP2.87□□□□□ -1.95
USP53-202ENST00000450251 TSPYL1Q9H0U9 437 aa2.87□□□□□ -1.95
USP53-202ENST00000450251 RTN4Q9NQC3 1192 aaKnown RBP2.87□□□□□ -1.95
USP53-202ENST00000450251 TCERG1O14776 1098 aaKnown RBP2.87□□□□□ -1.95
USP53-202ENST00000450251 GSE1Q14687 1217 aa2.87□□□□□ -1.95
USP53-202ENST00000450251 GOLGA6L6A8MZA4 724 aa2.86□□□□□ -1.95
USP53-202ENST00000450251 HNRNPUQ00839 825 aaKnown RBP eCLIP2.86□□□□□ -1.95
USP53-202ENST00000450251 TIMELESSQ9UNS1 1208 aa2.86□□□□□ -1.95
USP53-202ENST00000450251 DSG3P32926 999 aa2.86□□□□□ -1.95
USP53-202ENST00000450251 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.86□□□□□ -1.95
USP53-202ENST00000450251 CADPSQ9ULU8 1353 aa2.86□□□□□ -1.95
USP53-202ENST00000450251 CSPP1Q1MSJ5 1256 aa2.86□□□□□ -1.95
USP53-202ENST00000450251 NCBP3Q53F19 620 aaKnown RBP2.85□□□□□ -1.95
USP53-202ENST00000450251 ISY1Q9ULR0 285 aaKnown RBP2.85□□□□□ -1.95
USP53-202ENST00000450251 CFAP44Q96MT7 982 aa2.85□□□□□ -1.95
USP53-202ENST00000450251 CCDC66A2RUB6 948 aa2.85□□□□□ -1.95
USP53-202ENST00000450251 TNNT3P45378 269 aaPredicted RBP2.85□□□□□ -1.95
USP53-202ENST00000450251 ANO8Q9HCE9 1232 aaPredicted RBP2.85□□□□□ -1.95
USP53-202ENST00000450251 SMARCA4P51532 1647 aa2.85□□□□□ -1.95
USP53-202ENST00000450251 GOLGA6L1Q8N7Z2 621 aa2.85□□□□□ -1.95
USP53-202ENST00000450251 TONSLQ96HA7 1378 aa2.85□□□□□ -1.95
USP53-202ENST00000450251 GOLGA3Q08378 1498 aa2.84□□□□□ -1.95
USP53-202ENST00000450251 WRNQ14191 1432 aaPredicted RBP eCLIP2.84□□□□□ -1.95
USP53-202ENST00000450251 PTMAP06454 111 aaKnown RBP2.84□□□□□ -1.96
USP53-202ENST00000450251 MS4A1P11836 297 aa2.84□□□□□ -1.96
USP53-202ENST00000450251 PDIA4P13667 645 aaKnown RBP2.84□□□□□ -1.96
USP53-202ENST00000450251 DNTTIP2Q5QJE6 756 aaKnown RBP2.84□□□□□ -1.96
USP53-202ENST00000450251 DDX11L8A8MPP1 907 aa2.84□□□□□ -1.96
USP53-202ENST00000450251 APPP05067 770 aa2.84□□□□□ -1.96
USP53-202ENST00000450251 SETQ01105 290 aaPredicted RBP2.84□□□□□ -1.96
USP53-202ENST00000450251 SKOR2Q2VWA4 1001 aaPredicted RBP2.83□□□□□ -1.96
USP53-202ENST00000450251 NOM1Q5C9Z4 860 aaKnown RBP2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms