RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 DNMBPQ6XZF7 1577 aa27.4■■□□□ 1.98
HMGA1-205ENST00000447654 FANCIQ9NVI1 1328 aa27.39■■□□□ 1.98
HMGA1-205ENST00000447654 POLA1P09884 1462 aaPredicted RBP27.36■■□□□ 1.97
HMGA1-205ENST00000447654 CARMIL1Q5VZK9 1371 aa27.34■■□□□ 1.97
HMGA1-205ENST00000447654 LAMC3Q9Y6N6 1575 aa27.34■■□□□ 1.97
HMGA1-205ENST00000447654 ARHGAP35Q9NRY4 1499 aa27.31■■□□□ 1.96
HMGA1-205ENST00000447654 URB2Q14146 1524 aaKnown RBP27.3■■□□□ 1.96
HMGA1-205ENST00000447654 DNAJC5Q9H3Z4 198 aa27.29■■□□□ 1.96
HMGA1-205ENST00000447654 MSH5O43196 834 aa27.28■■□□□ 1.96
HMGA1-205ENST00000447654 ABCA10Q8WWZ4 1543 aa27.27■■□□□ 1.96
HMGA1-205ENST00000447654 FKBP8Q14318 412 aa27.25■■□□□ 1.95
HMGA1-205ENST00000447654 KANK4Q5T7N3 995 aaPredicted RBP27.22■■□□□ 1.95
HMGA1-205ENST00000447654 NEFLP07196 543 aa27.22■■□□□ 1.95
HMGA1-205ENST00000447654 ERICH6BQ5W0A0 696 aa27.21■■□□□ 1.95
HMGA1-205ENST00000447654 HNRNPUL2Q1KMD3 747 aaKnown RBP27.19■■□□□ 1.94
HMGA1-205ENST00000447654 KIF21AQ7Z4S6 1674 aa27.16■■□□□ 1.94
HMGA1-205ENST00000447654 PDS5BQ9NTI5 1447 aa27.15■■□□□ 1.94
HMGA1-205ENST00000447654 BCANQ96GW7 911 aa27.15■■□□□ 1.94
HMGA1-205ENST00000447654 WDR97A6NE52 1622 aa27.1■■□□□ 1.93
HMGA1-205ENST00000447654 TDRD9Q8NDG6 1382 aaKnown RBP27.08■■□□□ 1.93
HMGA1-205ENST00000447654 DEKP35659 375 aaKnown RBP27.07■■□□□ 1.92
HMGA1-205ENST00000447654 DHX57Q6P158 1386 aaKnown RBP27.02■■□□□ 1.92
HMGA1-205ENST00000447654 P3H3Q8IVL6 736 aa27■■□□□ 1.91
HMGA1-205ENST00000447654 ABCA5Q8WWZ7 1642 aa27■■□□□ 1.91
HMGA1-205ENST00000447654 CUL7Q14999 1698 aa26.99■■□□□ 1.91
HMGA1-205ENST00000447654 GAPVD1Q14C86 1478 aa26.95■■□□□ 1.9
HMGA1-205ENST00000447654 ANO8Q9HCE9 1232 aaPredicted RBP26.93■■□□□ 1.9
HMGA1-205ENST00000447654 TARBP1Q13395 1621 aaKnown RBP26.92■■□□□ 1.9
HMGA1-205ENST00000447654 ERCC6Q03468 1493 aa26.91■■□□□ 1.9
HMGA1-205ENST00000447654 CDK11AQ9UQ88 783 aaPredicted RBP26.91■■□□□ 1.9
HMGA1-205ENST00000447654 FHOD3Q2V2M9 1422 aa26.9■■□□□ 1.9
HMGA1-205ENST00000447654 RRBP1Q9P2E9 1410 aaKnown RBP26.89■■□□□ 1.89
HMGA1-205ENST00000447654 TIAM1Q13009 1591 aa26.88■■□□□ 1.89
HMGA1-205ENST00000447654 CTTNBP2Q8WZ74 1663 aa26.86■■□□□ 1.89
HMGA1-205ENST00000447654 PCF11O94913 1555 aaKnown RBP26.85■■□□□ 1.89
HMGA1-205ENST00000447654 UBE2Q2Q8WVN8 375 aa26.82■■□□□ 1.88
HMGA1-205ENST00000447654 MAP3K1Q13233 1512 aa26.81■■□□□ 1.88
HMGA1-205ENST00000447654 CCER2I3L3R5 266 aa26.81■■□□□ 1.88
HMGA1-205ENST00000447654 KCNH8Q96L42 1107 aa26.81■■□□□ 1.88
HMGA1-205ENST00000447654 FHAD1B1AJZ9 1412 aa26.8■■□□□ 1.88
HMGA1-205ENST00000447654 MRC2Q9UBG0 1479 aa26.8■■□□□ 1.88
HMGA1-205ENST00000447654 LRRC9Q6ZRR7 1453 aa26.79■■□□□ 1.88
HMGA1-205ENST00000447654 AQRO60306 1485 aaKnown RBP eCLIP26.78■■□□□ 1.882e-7■■■■■ 51.4
HMGA1-205ENST00000447654 ITGAEP38570 1179 aa26.78■■□□□ 1.88
HMGA1-205ENST00000447654 CCNB3Q8WWL7 1395 aa26.78■■□□□ 1.88
HMGA1-205ENST00000447654 EFCAB5A4FU69 1503 aa26.77■■□□□ 1.88
HMGA1-205ENST00000447654 ATP1B4Q9UN42 357 aaPredicted RBP26.75■■□□□ 1.87
HMGA1-205ENST00000447654 PHLDB1Q86UU1 1377 aa26.71■■□□□ 1.87
HMGA1-205ENST00000447654 CFAP43Q8NDM7 1665 aa26.71■■□□□ 1.87
HMGA1-205ENST00000447654 PBRM1Q86U86 1689 aa26.69■■□□□ 1.86
HMGA1-205ENST00000447654 CASKIN1Q8WXD9 1431 aa26.69■■□□□ 1.86
HMGA1-205ENST00000447654 FYCO1Q9BQS8 1478 aa26.67■■□□□ 1.86
HMGA1-205ENST00000447654 SAMD9Q5K651 1589 aa26.67■■□□□ 1.86
HMGA1-205ENST00000447654 ZNF608Q9ULD9 1512 aaPredicted RBP26.67■■□□□ 1.86
HMGA1-205ENST00000447654 SALL2Q9Y467 1007 aaPredicted RBP26.65■■□□□ 1.86
HMGA1-205ENST00000447654 SNAPC4Q5SXM2 1469 aa26.64■■□□□ 1.86
HMGA1-205ENST00000447654 WDR62O43379 1518 aa26.62■■□□□ 1.85
HMGA1-205ENST00000447654 FMN1Q68DA7 1419 aa26.6■■□□□ 1.85
HMGA1-205ENST00000447654 NOP58Q9Y2X3 529 aaKnown RBP26.6■■□□□ 1.85
HMGA1-205ENST00000447654 ADAMTS12P58397 1594 aa26.59■■□□□ 1.85
HMGA1-205ENST00000447654 LRRIQ1Q96JM4 1722 aa26.56■■□□□ 1.84
HMGA1-205ENST00000447654 GRIN2BQ13224 1484 aa26.56■■□□□ 1.84
HMGA1-205ENST00000447654 IFT140Q96RY7 1462 aa26.55■■□□□ 1.84
HMGA1-205ENST00000447654 PPP1R15AO75807 674 aaPredicted RBP26.54■■□□□ 1.84
HMGA1-205ENST00000447654 FAM50AQ14320 339 aaKnown RBP26.5■■□□□ 1.83
HMGA1-205ENST00000447654 PPP4R2Q9NY27 417 aa26.48■■□□□ 1.83
HMGA1-205ENST00000447654 THOC2Q8NI27 1593 aaKnown RBP26.48■■□□□ 1.83
HMGA1-205ENST00000447654 ANP32CO43423 234 aa26.46■■□□□ 1.83
HMGA1-205ENST00000447654 RAB3GAP2Q9H2M9 1393 aa26.46■■□□□ 1.83
HMGA1-205ENST00000447654 IQGAP2Q13576 1575 aa26.46■■□□□ 1.83
HMGA1-205ENST00000447654 TRIM52Q96A61 297 aa26.46■■□□□ 1.83
HMGA1-205ENST00000447654 DDX10Q13206 875 aaKnown RBP26.44■■□□□ 1.82
HMGA1-205ENST00000447654 RTL5Q5HYW3 569 aaPredicted RBP26.44■■□□□ 1.82
HMGA1-205ENST00000447654 EIF4G3O43432 1585 aaKnown RBP26.42■■□□□ 1.82
HMGA1-205ENST00000447654 TIMELESSQ9UNS1 1208 aa26.4■■□□□ 1.82
HMGA1-205ENST00000447654 MTUS2Q5JR59 1369 aa26.4■■□□□ 1.82
HMGA1-205ENST00000447654 SETD5Q9C0A6 1442 aa26.36■■□□□ 1.81
HMGA1-205ENST00000447654 MAGI3Q5TCQ9 1506 aa26.36■■□□□ 1.81
HMGA1-205ENST00000447654 MAPKBP1O60336 1514 aa26.35■■□□□ 1.81
HMGA1-205ENST00000447654 FGD6Q6ZV73 1430 aa26.35■■□□□ 1.81
HMGA1-205ENST00000447654 NBR1Q14596 966 aa26.34■■□□□ 1.81
HMGA1-205ENST00000447654 C11orf95C9JLR9 678 aaPredicted RBP26.31■■□□□ 1.8
HMGA1-205ENST00000447654 NCOA2Q15596 1464 aa26.31■■□□□ 1.8
HMGA1-205ENST00000447654 UGGT2Q9NYU1 1516 aa26.31■■□□□ 1.8
HMGA1-205ENST00000447654 GRIN2AQ12879 1464 aa26.3■■□□□ 1.8
HMGA1-205ENST00000447654 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.29■■□□□ 1.84e-21■□□□□ 9.5
HMGA1-205ENST00000447654 CCDC136Q96JN2 1154 aa26.29■■□□□ 1.8
HMGA1-205ENST00000447654 WASHC2AQ641Q2 1341 aa26.28■■□□□ 1.8
HMGA1-205ENST00000447654 KIAA0586Q9BVV6 1533 aa26.27■■□□□ 1.8
HMGA1-205ENST00000447654 ARID3CA6NKF2 412 aa26.27■■□□□ 1.8
HMGA1-205ENST00000447654 IL27Q8NEV9 243 aa26.27■■□□□ 1.8
HMGA1-205ENST00000447654 DISP1Q96F81 1524 aa26.26■■□□□ 1.8
HMGA1-205ENST00000447654 PAK3O75914 559 aaPredicted RBP26.26■■□□□ 1.79
HMGA1-205ENST00000447654 PTPRKQ15262 1439 aa26.26■■□□□ 1.79
HMGA1-205ENST00000447654 IPO9Q96P70 1041 aaKnown RBP26.25■■□□□ 1.79
HMGA1-205ENST00000447654 EPRSP07814 1512 aaKnown RBP26.24■■□□□ 1.79
HMGA1-205ENST00000447654 CDK13Q14004 1512 aaKnown RBP26.24■■□□□ 1.79
HMGA1-205ENST00000447654 EHBP1L1Q8N3D4 1523 aa26.24■■□□□ 1.79
HMGA1-205ENST00000447654 USP35Q9P2H5 1018 aa26.24■■□□□ 1.79
HMGA1-205ENST00000447654 MYOM3Q5VTT5 1437 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 807.5 ms