RNA–Protein interactions for RNA: ENST00000442461.6

LIN54-202, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best) BASIC

Gene LIN54, Length 4,254 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-202ENST00000442461 L1TD1Q5T7N2 865 aaKnown RBP13.7□□□□□ -0.22
LIN54-202ENST00000442461 IPO9Q96P70 1041 aaKnown RBP13.66□□□□□ -0.22
LIN54-202ENST00000442461 USP35Q9P2H5 1018 aa13.66□□□□□ -0.22
LIN54-202ENST00000442461 ZNF326Q5BKZ1 582 aaKnown RBP13.65□□□□□ -0.22
LIN54-202ENST00000442461 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.64□□□□□ -0.23
LIN54-202ENST00000442461 TMC1Q8TDI8 760 aa13.64□□□□□ -0.23
LIN54-202ENST00000442461 SALL2Q9Y467 1007 aaPredicted RBP13.64□□□□□ -0.23
LIN54-202ENST00000442461 PODXL2Q9NZ53 605 aa13.64□□□□□ -0.23
LIN54-202ENST00000442461 HIRIP3Q9BW71 556 aaPredicted RBP13.62□□□□□ -0.23
LIN54-202ENST00000442461 ARID4BQ4LE39 1312 aaPredicted RBP13.61□□□□□ -0.23
LIN54-202ENST00000442461 TIMELESSQ9UNS1 1208 aa13.59□□□□□ -0.23
LIN54-202ENST00000442461 CCER2I3L3R5 266 aa13.59□□□□□ -0.23
LIN54-202ENST00000442461 DNTTIP2Q5QJE6 756 aaKnown RBP13.59□□□□□ -0.23
LIN54-202ENST00000442461 GOLGA6L22H0YM25 854 aa13.58□□□□□ -0.24
LIN54-202ENST00000442461 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
LIN54-202ENST00000442461 SLC24A1O60721 1099 aa13.54□□□□□ -0.24
LIN54-202ENST00000442461 PTMAP06454 111 aaKnown RBP13.54□□□□□ -0.24
LIN54-202ENST00000442461 AMER1Q5JTC6 1135 aaPredicted RBP13.53□□□□□ -0.24
LIN54-202ENST00000442461 GSE1Q14687 1217 aa13.52□□□□□ -0.24
LIN54-202ENST00000442461 MSNP26038 577 aaKnown RBP13.52□□□□□ -0.25
LIN54-202ENST00000442461 UBE2Q2Q8WVN8 375 aa13.51□□□□□ -0.25
LIN54-202ENST00000442461 A0A0U1RQG5 324 aaPredicted RBP13.49□□□□□ -0.25
LIN54-202ENST00000442461 TCERG1O14776 1098 aaKnown RBP13.47□□□□□ -0.25
LIN54-202ENST00000442461 EIF4G2P78344 907 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIN54-202ENST00000442461 IL27Q8NEV9 243 aa13.47□□□□□ -0.25
LIN54-202ENST00000442461 GOLGA6L3A6NEY3 463 aa13.42□□□□□ -0.26
LIN54-202ENST00000442461 RGS3P49796 1198 aa13.42□□□□□ -0.26
LIN54-202ENST00000442461 ARID3AQ99856 593 aa13.41□□□□□ -0.26
LIN54-202ENST00000442461 MYH16Q9H6N6 1097 aa13.38□□□□□ -0.27
LIN54-202ENST00000442461 CEP162Q5TB80 1403 aa13.37□□□□□ -0.27
LIN54-202ENST00000442461 CHAF1AQ13111 956 aaPredicted RBP13.37□□□□□ -0.27
LIN54-202ENST00000442461 GZF1Q9H116 711 aaPredicted RBP13.36□□□□□ -0.27
LIN54-202ENST00000442461 TNNT3P45378 269 aaPredicted RBP13.34□□□□□ -0.27
LIN54-202ENST00000442461 WDR43Q15061 677 aaKnown RBP eCLIP13.34□□□□□ -0.27
LIN54-202ENST00000442461 SENP3-EIF4A1A0A087X0R7 540 aa13.33□□□□□ -0.27
LIN54-202ENST00000442461 BRPF3Q9ULD4 1205 aa13.32□□□□□ -0.28
LIN54-202ENST00000442461 SLKQ9H2G2 1235 aaPredicted RBP13.31□□□□□ -0.28
LIN54-202ENST00000442461 KCNH8Q96L42 1107 aa13.3□□□□□ -0.28
LIN54-202ENST00000442461 CLIP1P30622 1438 aa13.29□□□□□ -0.28
LIN54-202ENST00000442461 FAM43AQ8N2R8 423 aa13.29□□□□□ -0.28
LIN54-202ENST00000442461 HSP90AB1P08238 724 aaKnown RBP13.27□□□□□ -0.28
LIN54-202ENST00000442461 HSCBQ8IWL3 235 aa13.27□□□□□ -0.28
LIN54-202ENST00000442461 SIN3AQ96ST3 1273 aa13.27□□□□□ -0.29
LIN54-202ENST00000442461 PDE4AP27815 886 aa13.27□□□□□ -0.29
LIN54-202ENST00000442461 PTMSP20962 102 aa13.26□□□□□ -0.29
LIN54-202ENST00000442461 RRP9O43818 475 aaKnown RBP13.26□□□□□ -0.29
LIN54-202ENST00000442461 GBP4Q96PP9 640 aa13.25□□□□□ -0.29
LIN54-202ENST00000442461 PLCB2Q00722 1185 aa13.25□□□□□ -0.29
LIN54-202ENST00000442461 KIAA2012Q0VF49 1180 aa13.25□□□□□ -0.29
LIN54-202ENST00000442461 MSH5O43196 834 aa13.25□□□□□ -0.29
LIN54-202ENST00000442461 MAP7D2Q96T17 732 aa13.24□□□□□ -0.29
LIN54-202ENST00000442461 TNIKQ9UKE5 1360 aa13.24□□□□□ -0.29
LIN54-202ENST00000442461 SPRYD3Q8NCJ5 442 aa13.23□□□□□ -0.29
LIN54-202ENST00000442461 PAK3O75914 559 aaPredicted RBP13.23□□□□□ -0.29
LIN54-202ENST00000442461 FAM13BQ9NYF5 915 aa13.23□□□□□ -0.29
LIN54-202ENST00000442461 EEA1Q15075 1411 aa13.22□□□□□ -0.29
LIN54-202ENST00000442461 NFKBIBQ15653 356 aa13.22□□□□□ -0.29
LIN54-202ENST00000442461 NUDCQ9Y266 331 aa13.21□□□□□ -0.29
LIN54-202ENST00000442461 FRAT1Q92837 279 aaPredicted RBP13.2□□□□□ -0.3
LIN54-202ENST00000442461 ZMYND15Q9H091 742 aa13.2□□□□□ -0.3
LIN54-202ENST00000442461 P3H3Q8IVL6 736 aa13.2□□□□□ -0.3
LIN54-202ENST00000442461 SLC4A3P48751 1232 aa13.19□□□□□ -0.3
LIN54-202ENST00000442461 RCAN3Q9UKA8 241 aa13.19□□□□□ -0.3
LIN54-202ENST00000442461 MS4A1P11836 297 aa13.18□□□□□ -0.3
LIN54-202ENST00000442461 MTERF4Q7Z6M4 381 aaKnown RBP13.18□□□□□ -0.3
LIN54-202ENST00000442461 TPM2P07951 284 aa13.17□□□□□ -0.3
LIN54-202ENST00000442461 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.16□□□□□ -0.3
LIN54-202ENST00000442461 ZBTB7CA1YPR0 619 aa13.15□□□□□ -0.3
LIN54-202ENST00000442461 GOLGA3Q08378 1498 aa13.14□□□□□ -0.31
LIN54-202ENST00000442461 ZNF771Q7L3S4 317 aaPredicted RBP13.13□□□□□ -0.31
LIN54-202ENST00000442461 DDX11L8A8MPP1 907 aa13.13□□□□□ -0.31
LIN54-202ENST00000442461 NRDCO43847 1150 aa13.11□□□□□ -0.31
LIN54-202ENST00000442461 PDE4CQ08493 712 aa13.11□□□□□ -0.31
LIN54-202ENST00000442461 CHIC2Q9UKJ5 165 aa13.11□□□□□ -0.31
LIN54-202ENST00000442461 FAM161AQ3B820 660 aa13.1□□□□□ -0.31
LIN54-202ENST00000442461 CALD1Q05682 793 aaKnown RBP13.09□□□□□ -0.31
LIN54-202ENST00000442461 TPRNQ4KMQ1 711 aa13.09□□□□□ -0.31
LIN54-202ENST00000442461 GOLGA6L6A8MZA4 724 aa13.08□□□□□ -0.31
LIN54-202ENST00000442461 FTSJ3Q8IY81 847 aaKnown RBP13.08□□□□□ -0.31
LIN54-202ENST00000442461 CSPP1Q1MSJ5 1256 aa13.08□□□□□ -0.32
LIN54-202ENST00000442461 ZCCHC6Q5VYS8 1495 aaKnown RBP13.08□□□□□ -0.32
LIN54-202ENST00000442461 CASC1Q6TDU7 716 aa13.08□□□□□ -0.32
LIN54-202ENST00000442461 MRE11P49959 708 aa13.07□□□□□ -0.32
LIN54-202ENST00000442461 ZRSR1Q15695 479 aaKnown RBP13.07□□□□□ -0.32
LIN54-202ENST00000442461 ZBED9Q6R2W3 1325 aa13.07□□□□□ -0.32
LIN54-202ENST00000442461 SKOR2Q2VWA4 1001 aaPredicted RBP13.06□□□□□ -0.32
LIN54-202ENST00000442461 CCNB3Q8WWL7 1395 aa13.06□□□□□ -0.32
LIN54-202ENST00000442461 HSPA5P11021 654 aaKnown RBP13.05□□□□□ -0.32
LIN54-202ENST00000442461 KDM2AQ9Y2K7 1162 aa13.05□□□□□ -0.32
LIN54-202ENST00000442461 PPP1R15AO75807 674 aaPredicted RBP13.05□□□□□ -0.32
LIN54-202ENST00000442461 DRC7Q8IY82 874 aa13.04□□□□□ -0.32
LIN54-202ENST00000442461 SYAP1Q96A49 352 aaPredicted RBP13.04□□□□□ -0.32
LIN54-202ENST00000442461 APPP05067 770 aa13.03□□□□□ -0.32
LIN54-202ENST00000442461 R3HCC1Q9Y3T6 440 aaKnown RBP13.02□□□□□ -0.32
LIN54-202ENST00000442461 FRAT2O75474 233 aaPredicted RBP13.02□□□□□ -0.32
LIN54-202ENST00000442461 PDE3BQ13370 1112 aa13.02□□□□□ -0.33
LIN54-202ENST00000442461 EXOC6Q8TAG9 804 aa13.02□□□□□ -0.33
LIN54-202ENST00000442461 CENPQQ7L2Z9 268 aaPredicted RBP13.01□□□□□ -0.33
LIN54-202ENST00000442461 DDX49Q9Y6V7 483 aaKnown RBP13□□□□□ -0.33
LIN54-202ENST00000442461 RBM10P98175 930 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms