RNA–Protein interactions for RNA: ENST00000442461.6

LIN54-202, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best) BASIC

Gene LIN54, Length 4,254 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-202ENST00000442461 PELP1Q8IZL8 1130 aaKnown RBP17.35■□□□□ 0.37
LIN54-202ENST00000442461 MYT1Q01538 1121 aa17.19■□□□□ 0.34
LIN54-202ENST00000442461 PCGF6Q9BYE7 350 aa16.39■□□□□ 0.21
LIN54-202ENST00000442461 CENPBP07199 599 aaPredicted RBP16.36■□□□□ 0.21
LIN54-202ENST00000442461 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
LIN54-202ENST00000442461 HRCP23327 699 aa16.21■□□□□ 0.19
LIN54-202ENST00000442461 ZEB1P37275 1124 aaPredicted RBP16.19■□□□□ 0.18
LIN54-202ENST00000442461 ERICH6Q7L0X2 663 aa16.01■□□□□ 0.15
LIN54-202ENST00000442461 DCAF8L2P0C7V8 631 aa15.94■□□□□ 0.14
LIN54-202ENST00000442461 CCER1Q8TC90 406 aaPredicted RBP15.87■□□□□ 0.13
LIN54-202ENST00000442461 TTBK1Q5TCY1 1321 aaPredicted RBP15.82■□□□□ 0.12
LIN54-202ENST00000442461 PPARGC1BQ86YN6 1023 aaKnown RBP15.75■□□□□ 0.11
LIN54-202ENST00000442461 SHROOM4Q9ULL8 1493 aa15.72■□□□□ 0.11
LIN54-202ENST00000442461 YTHDC1Q96MU7 727 aaKnown RBP15.68■□□□□ 0.1
LIN54-202ENST00000442461 NISCHQ9Y2I1 1504 aa15.63■□□□□ 0.09
LIN54-202ENST00000442461 EHMT2Q96KQ7 1210 aa15.61■□□□□ 0.09
LIN54-202ENST00000442461 TRIM26Q12899 539 aaPredicted RBP15.59■□□□□ 0.09
LIN54-202ENST00000442461 NEFLP07196 543 aa15.55■□□□□ 0.08
LIN54-202ENST00000442461 GTF3C3Q9Y5Q9 886 aa15.49■□□□□ 0.07
LIN54-202ENST00000442461 ACIN1Q9UKV3 1341 aaKnown RBP15.35■□□□□ 0.05
LIN54-202ENST00000442461 FAM9AQ8IZU1 332 aaPredicted RBP15.34■□□□□ 0.05
LIN54-202ENST00000442461 APLP2Q06481 763 aa15.3■□□□□ 0.04
LIN54-202ENST00000442461 DIEXFQ68CQ4 756 aaKnown RBP15.29■□□□□ 0.04
LIN54-202ENST00000442461 SCAF1Q9H7N4 1312 aaKnown RBP15.22■□□□□ 0.03
LIN54-202ENST00000442461 RTL5Q5HYW3 569 aaPredicted RBP15.14■□□□□ 0.01
LIN54-202ENST00000442461 TRIM41Q8WV44 630 aa15.06■□□□□ 0
LIN54-202ENST00000442461 CHIC1Q5VXU3 224 aa15.06■□□□□ 0
LIN54-202ENST00000442461 LOC105371045A0A1W2PR82 267 aa15.02□□□□□ -0.01
LIN54-202ENST00000442461 NEUROD1Q13562 356 aa14.98□□□□□ -0.01
LIN54-202ENST00000442461 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.95□□□□□ -0.02
LIN54-202ENST00000442461 DAXXQ9UER7 740 aaPredicted RBP14.95□□□□□ -0.02
LIN54-202ENST00000442461 BCL11AQ9H165 835 aa14.91□□□□□ -0.02
LIN54-202ENST00000442461 MYT1LQ9UL68 1186 aa14.89□□□□□ -0.03
LIN54-202ENST00000442461 BCANQ96GW7 911 aa14.88□□□□□ -0.03
LIN54-202ENST00000442461 CLSPNQ9HAW4 1339 aa14.87□□□□□ -0.03
LIN54-202ENST00000442461 ANP32EQ9BTT0 268 aa14.85□□□□□ -0.03
LIN54-202ENST00000442461 EIF5BO60841 1220 aaKnown RBP14.83□□□□□ -0.03
LIN54-202ENST00000442461 CDK11AQ9UQ88 783 aaPredicted RBP14.81□□□□□ -0.04
LIN54-202ENST00000442461 ZNF316A6NFI3 1004 aaPredicted RBP14.79□□□□□ -0.04
LIN54-202ENST00000442461 GLIPR1L2Q4G1C9 344 aa14.76□□□□□ -0.05
LIN54-202ENST00000442461 UBTFP17480 764 aaKnown RBP14.71□□□□□ -0.05
LIN54-202ENST00000442461 HNRNPUL2Q1KMD3 747 aaKnown RBP14.64□□□□□ -0.07
LIN54-202ENST00000442461 RANGAP1P46060 587 aaPredicted RBP14.59□□□□□ -0.07
LIN54-202ENST00000442461 ANP32AP39687 249 aaKnown RBP14.55□□□□□ -0.08
LIN54-202ENST00000442461 FKBP8Q14318 412 aa14.55□□□□□ -0.08
LIN54-202ENST00000442461 DCAF1Q9Y4B6 1507 aa14.53□□□□□ -0.08
LIN54-202ENST00000442461 NBR1Q14596 966 aa14.46□□□□□ -0.1
LIN54-202ENST00000442461 ANP32CO43423 234 aa14.41□□□□□ -0.1
LIN54-202ENST00000442461 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
LIN54-202ENST00000442461 MIER1Q8N108 512 aa14.37□□□□□ -0.11
LIN54-202ENST00000442461 ITGAEP38570 1179 aa14.35□□□□□ -0.11
LIN54-202ENST00000442461 ZBTB47Q9UFB7 747 aaPredicted RBP14.34□□□□□ -0.11
LIN54-202ENST00000442461 ATP1B4Q9UN42 357 aaPredicted RBP14.3□□□□□ -0.12
LIN54-202ENST00000442461 NPM2Q86SE8 214 aaKnown RBP14.29□□□□□ -0.12
LIN54-202ENST00000442461 POLR3GLQ9BT43 218 aa14.25□□□□□ -0.13
LIN54-202ENST00000442461 SUPT16HQ9Y5B9 1047 aaKnown RBP14.25□□□□□ -0.13
LIN54-202ENST00000442461 DEKP35659 375 aaKnown RBP14.24□□□□□ -0.13
LIN54-202ENST00000442461 CNGB1Q14028 1251 aaPredicted RBP14.24□□□□□ -0.13
LIN54-202ENST00000442461 RTN4Q9NQC3 1192 aaKnown RBP14.23□□□□□ -0.13
LIN54-202ENST00000442461 PRKCSHP14314 528 aaPredicted RBP14.2□□□□□ -0.14
LIN54-202ENST00000442461 ERICH6BQ5W0A0 696 aa14.15□□□□□ -0.14
LIN54-202ENST00000442461 TSHZ2Q9NRE2 1034 aa14.14□□□□□ -0.15
LIN54-202ENST00000442461 RBM19Q9Y4C8 960 aaKnown RBP14.13□□□□□ -0.15
LIN54-202ENST00000442461 NEFMP07197 916 aa14.12□□□□□ -0.15
LIN54-202ENST00000442461 HNRNPUQ00839 825 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIN54-202ENST00000442461 TRIM52Q96A61 297 aa14.11□□□□□ -0.15
LIN54-202ENST00000442461 ANP32BQ92688 251 aaKnown RBP14.09□□□□□ -0.15
LIN54-202ENST00000442461 CCDC180Q9P1Z9 1646 aa14.08□□□□□ -0.15
LIN54-202ENST00000442461 CCDC136Q96JN2 1154 aa14.07□□□□□ -0.16
LIN54-202ENST00000442461 NOP58Q9Y2X3 529 aaKnown RBP14.07□□□□□ -0.16
LIN54-202ENST00000442461 DDX10Q13206 875 aaKnown RBP14.04□□□□□ -0.16
LIN54-202ENST00000442461 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.04□□□□□ -0.16
LIN54-202ENST00000442461 PPM1GO15355 546 aaPredicted RBP14.03□□□□□ -0.16
LIN54-202ENST00000442461 IRX6P78412 446 aaPredicted RBP14.01□□□□□ -0.17
LIN54-202ENST00000442461 MYO15BQ96JP2 1530 aa14.01□□□□□ -0.17
LIN54-202ENST00000442461 TNNT2P45379 298 aaPredicted RBP13.98□□□□□ -0.17
LIN54-202ENST00000442461 NAP1L5Q96NT1 182 aaPredicted RBP13.97□□□□□ -0.17
LIN54-202ENST00000442461 ARXQ96QS3 562 aa13.95□□□□□ -0.18
LIN54-202ENST00000442461 DDRGK1Q96HY6 314 aa13.94□□□□□ -0.18
LIN54-202ENST00000442461 FAM50AQ14320 339 aaKnown RBP13.89□□□□□ -0.19
LIN54-202ENST00000442461 TRIM44Q96DX7 344 aaPredicted RBP13.89□□□□□ -0.19
LIN54-202ENST00000442461 PPP4R2Q9NY27 417 aa13.89□□□□□ -0.19
LIN54-202ENST00000442461 LAS1LQ9Y4W2 734 aaKnown RBP13.88□□□□□ -0.19
LIN54-202ENST00000442461 UPF2Q9HAU5 1272 aaKnown RBP13.88□□□□□ -0.19
LIN54-202ENST00000442461 FAM9BQ8IZU0 186 aa13.87□□□□□ -0.19
LIN54-202ENST00000442461 HSP90AA1P07900 732 aaKnown RBP13.81□□□□□ -0.2
LIN54-202ENST00000442461 ANO8Q9HCE9 1232 aaPredicted RBP13.81□□□□□ -0.2
LIN54-202ENST00000442461 NCLP19338 710 aaKnown RBP13.8□□□□□ -0.2
LIN54-202ENST00000442461 VSIG10Q8N0Z9 540 aa13.8□□□□□ -0.2
LIN54-202ENST00000442461 CDK11BP21127 795 aaKnown RBP13.78□□□□□ -0.2
LIN54-202ENST00000442461 CANXP27824 592 aaKnown RBP13.78□□□□□ -0.2
LIN54-202ENST00000442461 RSPH6AQ9H0K4 717 aa13.78□□□□□ -0.2
LIN54-202ENST00000442461 MRS2Q9HD23 443 aa13.75□□□□□ -0.21
LIN54-202ENST00000442461 BECN1Q14457 450 aa13.75□□□□□ -0.21
LIN54-202ENST00000442461 PKNOX2Q96KN3 472 aa13.75□□□□□ -0.21
LIN54-202ENST00000442461 PNNQ9H307 717 aaKnown RBP13.73□□□□□ -0.21
LIN54-202ENST00000442461 B4GALNT3Q6L9W6 998 aa13.72□□□□□ -0.21
LIN54-202ENST00000442461 FANCIQ9NVI1 1328 aa13.71□□□□□ -0.21
LIN54-202ENST00000442461 TONSLQ96HA7 1378 aa13.71□□□□□ -0.21
LIN54-202ENST00000442461 HSP90AA2PQ14568 343 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms