RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 SMARCA4P51532 1647 aa16.94■□□□□ 0.3
TCOF1-205ENST00000439160 ESF1Q9H501 851 aaKnown RBP16.93■□□□□ 0.3
TCOF1-205ENST00000439160 CLSPNQ9HAW4 1339 aa16.92■□□□□ 0.3
TCOF1-205ENST00000439160 PLPPR3Q6T4P5 718 aa16.91■□□□□ 0.3
TCOF1-205ENST00000439160 MIER1Q8N108 512 aa16.91■□□□□ 0.3
TCOF1-205ENST00000439160 CADPSQ9ULU8 1353 aa16.91■□□□□ 0.3
TCOF1-205ENST00000439160 STAG3Q9UJ98 1225 aa16.9■□□□□ 0.3
TCOF1-205ENST00000439160 KANK4Q5T7N3 995 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-205ENST00000439160 FAM9BQ8IZU0 186 aa16.87■□□□□ 0.29
TCOF1-205ENST00000439160 PDS5BQ9NTI5 1447 aa16.87■□□□□ 0.29
TCOF1-205ENST00000439160 VPS8Q8N3P4 1428 aa16.87■□□□□ 0.29
TCOF1-205ENST00000439160 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
TCOF1-205ENST00000439160 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
TCOF1-205ENST00000439160 HNRNPUQ00839 825 aaKnown RBP eCLIP16.87■□□□□ 0.29
TCOF1-205ENST00000439160 SIN3AQ96ST3 1273 aa16.85■□□□□ 0.29
TCOF1-205ENST00000439160 CCNB3Q8WWL7 1395 aa16.85■□□□□ 0.29
TCOF1-205ENST00000439160 RUSC2Q8N2Y8 1516 aa16.83■□□□□ 0.28
TCOF1-205ENST00000439160 RGL3Q3MIN7 710 aa16.82■□□□□ 0.28
TCOF1-205ENST00000439160 EIF4G2P78344 907 aaKnown RBP eCLIP16.81■□□□□ 0.28
TCOF1-205ENST00000439160 SALL2Q9Y467 1007 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-205ENST00000439160 SENP3Q9H4L4 574 aaPredicted RBP16.79■□□□□ 0.28
TCOF1-205ENST00000439160 RAPGEF2Q9Y4G8 1499 aa16.77■□□□□ 0.27
TCOF1-205ENST00000439160 FKBP8Q14318 412 aa16.76■□□□□ 0.27
TCOF1-205ENST00000439160 TMC1Q8TDI8 760 aa16.75■□□□□ 0.27
TCOF1-205ENST00000439160 CANXP27824 592 aaKnown RBP16.75■□□□□ 0.27
TCOF1-205ENST00000439160 MRS2Q9HD23 443 aa16.75■□□□□ 0.27
TCOF1-205ENST00000439160 NEFMP07197 916 aa16.74■□□□□ 0.27
TCOF1-205ENST00000439160 SLC24A1O60721 1099 aa16.73■□□□□ 0.27
TCOF1-205ENST00000439160 BCL11AQ9H165 835 aa16.71■□□□□ 0.27
TCOF1-205ENST00000439160 FANCD2Q9BXW9 1451 aa16.67■□□□□ 0.26
TCOF1-205ENST00000439160 FHOD3Q2V2M9 1422 aa16.66■□□□□ 0.26
TCOF1-205ENST00000439160 ARHGAP35Q9NRY4 1499 aa16.63■□□□□ 0.25
TCOF1-205ENST00000439160 FMN1Q68DA7 1419 aa16.63■□□□□ 0.25
TCOF1-205ENST00000439160 CARD11Q9BXL7 1154 aa16.62■□□□□ 0.25
TCOF1-205ENST00000439160 SETD5Q9C0A6 1442 aa16.61■□□□□ 0.25
TCOF1-205ENST00000439160 SENP3-EIF4A1A0A087X0R7 540 aa16.61■□□□□ 0.25
TCOF1-205ENST00000439160 FOXD1Q16676 465 aa16.59■□□□□ 0.25
TCOF1-205ENST00000439160 CARMIL2Q6F5E8 1435 aa16.59■□□□□ 0.25
TCOF1-205ENST00000439160 ZBTB47Q9UFB7 747 aaPredicted RBP16.58■□□□□ 0.25
TCOF1-205ENST00000439160 NCAPD3P42695 1498 aa16.58■□□□□ 0.24
TCOF1-205ENST00000439160 RTL5Q5HYW3 569 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-205ENST00000439160 WDR43Q15061 677 aaKnown RBP eCLIP16.57■□□□□ 0.247e-6■■■■■ 27.3
TCOF1-205ENST00000439160 RAB3GAP2Q9H2M9 1393 aa16.56■□□□□ 0.24
TCOF1-205ENST00000439160 IRX6P78412 446 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-205ENST00000439160 JPH4Q96JJ6 628 aa16.54■□□□□ 0.24
TCOF1-205ENST00000439160 IGF1RP08069 1367 aa16.54■□□□□ 0.24
TCOF1-205ENST00000439160 PPP1R15AO75807 674 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-205ENST00000439160 DCAF11Q8TEB1 546 aa16.52■□□□□ 0.24
TCOF1-205ENST00000439160 FGD5Q6ZNL6 1462 aa16.52■□□□□ 0.24
TCOF1-205ENST00000439160 ARID4BQ4LE39 1312 aaPredicted RBP16.52■□□□□ 0.23
TCOF1-205ENST00000439160 RAD54L2Q9Y4B4 1467 aa16.51■□□□□ 0.23
TCOF1-205ENST00000439160 PKD2Q13563 968 aa16.5■□□□□ 0.23
TCOF1-205ENST00000439160 TIMELESSQ9UNS1 1208 aa16.48■□□□□ 0.23
TCOF1-205ENST00000439160 NPM2Q86SE8 214 aaKnown RBP16.47■□□□□ 0.23
TCOF1-205ENST00000439160 MPHOSPH9Q99550 1183 aa16.46■□□□□ 0.23
TCOF1-205ENST00000439160 CCDC136Q96JN2 1154 aa16.46■□□□□ 0.23
TCOF1-205ENST00000439160 KNSTRNQ9Y448 316 aa16.44■□□□□ 0.22
TCOF1-205ENST00000439160 HNRNPMP52272 730 aaKnown RBP eCLIP16.43■□□□□ 0.22
TCOF1-205ENST00000439160 GGT6Q6P531 493 aa16.42■□□□□ 0.22
TCOF1-205ENST00000439160 EFCAB2Q5VUJ9 269 aa16.42■□□□□ 0.22
TCOF1-205ENST00000439160 GAPVD1Q14C86 1478 aa16.41■□□□□ 0.22
TCOF1-205ENST00000439160 PLEKHG5O94827 1062 aa16.41■□□□□ 0.22
TCOF1-205ENST00000439160 CDCA8Q53HL2 280 aa16.41■□□□□ 0.22
TCOF1-205ENST00000439160 NUP155O75694 1391 aa16.41■□□□□ 0.22
TCOF1-205ENST00000439160 HSPA5P11021 654 aaKnown RBP16.4■□□□□ 0.22
TCOF1-205ENST00000439160 ANP32AP39687 249 aaKnown RBP16.4■□□□□ 0.22
TCOF1-205ENST00000439160 MLECQ14165 292 aa16.4■□□□□ 0.22
TCOF1-205ENST00000439160 CFTRP13569 1480 aa16.37■□□□□ 0.21
TCOF1-205ENST00000439160 ANKRD30AQ9BXX3 1397 aa16.37■□□□□ 0.21
TCOF1-205ENST00000439160 NESP48681 1621 aa16.36■□□□□ 0.21
TCOF1-205ENST00000439160 CC2D1BQ5T0F9 858 aaKnown RBP16.36■□□□□ 0.21
TCOF1-205ENST00000439160 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.36■□□□□ 0.21
TCOF1-205ENST00000439160 AQRO60306 1485 aaKnown RBP eCLIP16.36■□□□□ 0.215e-7■■■■■ 40.3
TCOF1-205ENST00000439160 SUPT16HQ9Y5B9 1047 aaKnown RBP16.35■□□□□ 0.21
TCOF1-205ENST00000439160 SYNJ1O43426 1573 aa16.35■□□□□ 0.21
TCOF1-205ENST00000439160 KANK1Q14678 1352 aa16.35■□□□□ 0.21
TCOF1-205ENST00000439160 CCDC18Q5T9S5 1454 aa16.35■□□□□ 0.21
TCOF1-205ENST00000439160 L3MBTL2Q969R5 705 aa16.34■□□□□ 0.21
TCOF1-205ENST00000439160 PPM1GO15355 546 aaPredicted RBP16.34■□□□□ 0.21
TCOF1-205ENST00000439160 POGKQ9P215 609 aa16.34■□□□□ 0.21
TCOF1-205ENST00000439160 TNNT2P45379 298 aaPredicted RBP16.33■□□□□ 0.21
TCOF1-205ENST00000439160 C14orf37Q86TY3 774 aa16.33■□□□□ 0.21
TCOF1-205ENST00000439160 DHX57Q6P158 1386 aaKnown RBP16.32■□□□□ 0.2
TCOF1-205ENST00000439160 NEUROD2Q15784 382 aa16.31■□□□□ 0.2
TCOF1-205ENST00000439160 KIF3BO15066 747 aa16.3■□□□□ 0.2
TCOF1-205ENST00000439160 TMF1P82094 1093 aa16.3■□□□□ 0.2
TCOF1-205ENST00000439160 PTPRGP23470 1445 aa16.3■□□□□ 0.2
TCOF1-205ENST00000439160 ZBTB7CA1YPR0 619 aa16.3■□□□□ 0.2
TCOF1-205ENST00000439160 TRHP20396 242 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-205ENST00000439160 SAFB2Q14151 953 aaKnown RBP eCLIP16.29■□□□□ 0.2
TCOF1-205ENST00000439160 KIF21BO75037 1637 aa16.28■□□□□ 0.2
TCOF1-205ENST00000439160 CFAP53Q96M91 514 aa16.28■□□□□ 0.2
TCOF1-205ENST00000439160 BICRAQ9NZM4 1560 aa16.26■□□□□ 0.19
TCOF1-205ENST00000439160 SPAG9O60271 1321 aaKnown RBP16.26■□□□□ 0.19
TCOF1-205ENST00000439160 CC2D2AQ9P2K1 1620 aa16.26■□□□□ 0.19
TCOF1-205ENST00000439160 DNAJC5BQ9UF47 199 aa16.25■□□□□ 0.19
TCOF1-205ENST00000439160 RSPH4AQ5TD94 716 aa16.24■□□□□ 0.19
TCOF1-205ENST00000439160 ZNF644Q9H582 1327 aaPredicted RBP16.23■□□□□ 0.19
TCOF1-205ENST00000439160 ARAP1Q96P48 1450 aa16.23■□□□□ 0.19
TCOF1-205ENST00000439160 PHLDB1Q86UU1 1377 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms