RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 EEA1Q15075 1411 aa10.27□□□□□ -0.77
CPSF6-202ENST00000435070 SENP3-EIF4A1A0A087X0R7 540 aa10.26□□□□□ -0.77
CPSF6-202ENST00000435070 ANP32AP39687 249 aaKnown RBP10.26□□□□□ -0.77
CPSF6-202ENST00000435070 CNGB1Q14028 1251 aaPredicted RBP10.26□□□□□ -0.77
CPSF6-202ENST00000435070 LAS1LQ9Y4W2 734 aaKnown RBP10.26□□□□□ -0.77
CPSF6-202ENST00000435070 BAZ1BQ9UIG0 1483 aaKnown RBP10.25□□□□□ -0.77
CPSF6-202ENST00000435070 FAM9BQ8IZU0 186 aa10.24□□□□□ -0.77
CPSF6-202ENST00000435070 RAB3GAP2Q9H2M9 1393 aa10.23□□□□□ -0.77
CPSF6-202ENST00000435070 UBE2Q2Q8WVN8 375 aa10.23□□□□□ -0.77
CPSF6-202ENST00000435070 CEP164Q9UPV0 1460 aa10.22□□□□□ -0.77
CPSF6-202ENST00000435070 WDR97A6NE52 1622 aa10.22□□□□□ -0.77
CPSF6-202ENST00000435070 FAM50AQ14320 339 aaKnown RBP10.21□□□□□ -0.77
CPSF6-202ENST00000435070 IPO9Q96P70 1041 aaKnown RBP10.21□□□□□ -0.77
CPSF6-202ENST00000435070 NACADO15069 1562 aa10.21□□□□□ -0.78
CPSF6-202ENST00000435070 NEFMP07197 916 aa10.2□□□□□ -0.78
CPSF6-202ENST00000435070 CCDC184Q52MB2 194 aa10.19□□□□□ -0.78
CPSF6-202ENST00000435070 EIF4G1Q04637 1599 aaKnown RBP10.19□□□□□ -0.78
CPSF6-202ENST00000435070 RAPGEF2Q9Y4G8 1499 aa10.19□□□□□ -0.78
CPSF6-202ENST00000435070 BRPF3Q9ULD4 1205 aa10.19□□□□□ -0.78
CPSF6-202ENST00000435070 CCNB3Q8WWL7 1395 aa10.19□□□□□ -0.78
CPSF6-202ENST00000435070 TIMELESSQ9UNS1 1208 aa10.16□□□□□ -0.78
CPSF6-202ENST00000435070 KIF21BO75037 1637 aa10.16□□□□□ -0.78
CPSF6-202ENST00000435070 BAZ1AQ9NRL2 1556 aaPredicted RBP10.15□□□□□ -0.79
CPSF6-202ENST00000435070 MRS2Q9HD23 443 aa10.13□□□□□ -0.79
CPSF6-202ENST00000435070 DAXXQ9UER7 740 aaPredicted RBP10.13□□□□□ -0.79
CPSF6-202ENST00000435070 POLR3GLQ9BT43 218 aa10.12□□□□□ -0.79
CPSF6-202ENST00000435070 MAPKBP1O60336 1514 aa10.12□□□□□ -0.79
CPSF6-202ENST00000435070 TONSLQ96HA7 1378 aa10.11□□□□□ -0.79
CPSF6-202ENST00000435070 RRBP1Q9P2E9 1410 aaKnown RBP10.09□□□□□ -0.79
CPSF6-202ENST00000435070 SETD5Q9C0A6 1442 aa10.09□□□□□ -0.79
CPSF6-202ENST00000435070 WASHC2AQ641Q2 1341 aa10.07□□□□□ -0.8
CPSF6-202ENST00000435070 PKNOX2Q96KN3 472 aa10.06□□□□□ -0.8
CPSF6-202ENST00000435070 SMARCA2P51531 1590 aa10.06□□□□□ -0.8
CPSF6-202ENST00000435070 SLC4A1APQ9BWU0 796 aaKnown RBP10.06□□□□□ -0.8
CPSF6-202ENST00000435070 AKNAQ7Z591 1439 aa10.05□□□□□ -0.8
CPSF6-202ENST00000435070 SLC4A3P48751 1232 aa10.05□□□□□ -0.8
CPSF6-202ENST00000435070 TOP2AP11388 1531 aaKnown RBP10.04□□□□□ -0.8
CPSF6-202ENST00000435070 HSPA5P11021 654 aaKnown RBP10.04□□□□□ -0.8
CPSF6-202ENST00000435070 ARAP1Q96P48 1450 aa10.03□□□□□ -0.8
CPSF6-202ENST00000435070 P3H3Q8IVL6 736 aa10.02□□□□□ -0.8
CPSF6-202ENST00000435070 GSE1Q14687 1217 aa10.02□□□□□ -0.81
CPSF6-202ENST00000435070 CUX2O14529 1486 aa10.02□□□□□ -0.81
CPSF6-202ENST00000435070 FRAT1Q92837 279 aaPredicted RBP10.01□□□□□ -0.81
CPSF6-202ENST00000435070 ZBED9Q6R2W3 1325 aa10.01□□□□□ -0.81
CPSF6-202ENST00000435070 PPM1GO15355 546 aaPredicted RBP10.01□□□□□ -0.81
CPSF6-202ENST00000435070 SKAP1Q86WV1 359 aa10.01□□□□□ -0.81
CPSF6-202ENST00000435070 PRKRIP1Q9H875 184 aaPredicted RBP10□□□□□ -0.81
CPSF6-202ENST00000435070 WASHC2CQ9Y4E1 1318 aa10□□□□□ -0.81
CPSF6-202ENST00000435070 C11orf95C9JLR9 678 aaPredicted RBP10□□□□□ -0.81
CPSF6-202ENST00000435070 SYNJ1O43426 1573 aa10□□□□□ -0.81
CPSF6-202ENST00000435070 PDE4AP27815 886 aa10□□□□□ -0.81
CPSF6-202ENST00000435070 USP35Q9P2H5 1018 aa10□□□□□ -0.81
CPSF6-202ENST00000435070 VSIG10Q8N0Z9 540 aa9.98□□□□□ -0.81
CPSF6-202ENST00000435070 NFKBIBQ15653 356 aa9.97□□□□□ -0.81
CPSF6-202ENST00000435070 ARXQ96QS3 562 aa9.97□□□□□ -0.81
CPSF6-202ENST00000435070 EIF4G2P78344 907 aaKnown RBP eCLIP9.97□□□□□ -0.81
CPSF6-202ENST00000435070 PHLDB1Q86UU1 1377 aa9.96□□□□□ -0.81
CPSF6-202ENST00000435070 EXOC6Q8TAG9 804 aa9.96□□□□□ -0.82
CPSF6-202ENST00000435070 NUDCQ9Y266 331 aa9.96□□□□□ -0.82
CPSF6-202ENST00000435070 RSPH6AQ9H0K4 717 aa9.93□□□□□ -0.82
CPSF6-202ENST00000435070 BACH2Q9BYV9 841 aa9.92□□□□□ -0.82
CPSF6-202ENST00000435070 GLIPR1L2Q4G1C9 344 aa9.92□□□□□ -0.82
CPSF6-202ENST00000435070 PABPN1Q86U42 306 aaKnown RBP eCLIP9.92□□□□□ -0.829e-7■□□□□ 9.9
CPSF6-202ENST00000435070 TCERG1O14776 1098 aaKnown RBP9.92□□□□□ -0.82
CPSF6-202ENST00000435070 DCAF11Q8TEB1 546 aa9.92□□□□□ -0.82
CPSF6-202ENST00000435070 ZMYND15Q9H091 742 aa9.92□□□□□ -0.82
CPSF6-202ENST00000435070 FRAT2O75474 233 aaPredicted RBP9.91□□□□□ -0.82
CPSF6-202ENST00000435070 FOXD1Q16676 465 aa9.89□□□□□ -0.83
CPSF6-202ENST00000435070 CHIC2Q9UKJ5 165 aa9.89□□□□□ -0.83
CPSF6-202ENST00000435070 CNTLNQ9NXG0 1405 aa9.89□□□□□ -0.83
CPSF6-202ENST00000435070 ARHGAP35Q9NRY4 1499 aa9.88□□□□□ -0.83
CPSF6-202ENST00000435070 SMARCA4P51532 1647 aa9.88□□□□□ -0.83
CPSF6-202ENST00000435070 NAP1L5Q96NT1 182 aaPredicted RBP9.88□□□□□ -0.83
CPSF6-202ENST00000435070 ARID4BQ4LE39 1312 aaPredicted RBP9.87□□□□□ -0.83
CPSF6-202ENST00000435070 PLIN1O60240 522 aa9.87□□□□□ -0.83
CPSF6-202ENST00000435070 RRP7BPQ9NSQ0 103 aa9.87□□□□□ -0.83
CPSF6-202ENST00000435070 DDRGK1Q96HY6 314 aa9.87□□□□□ -0.83
CPSF6-202ENST00000435070 SMG6Q86US8 1419 aaKnown RBP9.87□□□□□ -0.83
CPSF6-202ENST00000435070 TMC1Q8TDI8 760 aa9.87□□□□□ -0.83
CPSF6-202ENST00000435070 FAM43AQ8N2R8 423 aa9.86□□□□□ -0.83
CPSF6-202ENST00000435070 FHAD1B1AJZ9 1412 aa9.86□□□□□ -0.83
CPSF6-202ENST00000435070 PLEKHG5O94827 1062 aa9.86□□□□□ -0.83
CPSF6-202ENST00000435070 ZNF326Q5BKZ1 582 aaKnown RBP9.86□□□□□ -0.83
CPSF6-202ENST00000435070 CCDC7Q96M83 1385 aa9.85□□□□□ -0.83
CPSF6-202ENST00000435070 L3MBTL2Q969R5 705 aa9.85□□□□□ -0.83
CPSF6-202ENST00000435070 PRXQ9BXM0 1461 aa9.85□□□□□ -0.83
CPSF6-202ENST00000435070 RRP1P56182 461 aaKnown RBP9.85□□□□□ -0.83
CPSF6-202ENST00000435070 RRAGDQ9NQL2 400 aaPredicted RBP9.85□□□□□ -0.83
CPSF6-202ENST00000435070 RNF123Q5XPI4 1314 aa9.83□□□□□ -0.84
CPSF6-202ENST00000435070 KIF7Q2M1P5 1343 aa9.83□□□□□ -0.84
CPSF6-202ENST00000435070 RCAN3Q9UKA8 241 aa9.83□□□□□ -0.84
CPSF6-202ENST00000435070 LRRC9Q6ZRR7 1453 aa9.82□□□□□ -0.84
CPSF6-202ENST00000435070 POGKQ9P215 609 aa9.82□□□□□ -0.84
CPSF6-202ENST00000435070 HSP90AA2PQ14568 343 aaPredicted RBP9.82□□□□□ -0.84
CPSF6-202ENST00000435070 CCDC18Q5T9S5 1454 aa9.82□□□□□ -0.84
CPSF6-202ENST00000435070 MS4A1P11836 297 aa9.81□□□□□ -0.84
CPSF6-202ENST00000435070 RGS3P49796 1198 aa9.81□□□□□ -0.84
CPSF6-202ENST00000435070 PODXL2Q9NZ53 605 aa9.8□□□□□ -0.84
CPSF6-202ENST00000435070 AQRO60306 1485 aaKnown RBP eCLIP9.8□□□□□ -0.841e-6■■■■□ 22
CPSF6-202ENST00000435070 NBPF8Q3BBV2 869 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 424 ms