RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 NISCHQ9Y2I1 1504 aa13.19□□□□□ -0.3
CPSF6-202ENST00000435070 HRCP23327 699 aa12.65□□□□□ -0.38
CPSF6-202ENST00000435070 PPARGC1BQ86YN6 1023 aaKnown RBP12.6□□□□□ -0.39
CPSF6-202ENST00000435070 PCGF6Q9BYE7 350 aa12.5□□□□□ -0.41
CPSF6-202ENST00000435070 SUPT5HO00267 1087 aaKnown RBP12.39□□□□□ -0.43
CPSF6-202ENST00000435070 PELP1Q8IZL8 1130 aaKnown RBP12.37□□□□□ -0.43
CPSF6-202ENST00000435070 SHROOM4Q9ULL8 1493 aa12.33□□□□□ -0.44
CPSF6-202ENST00000435070 SCAF1Q9H7N4 1312 aaKnown RBP12.14□□□□□ -0.47
CPSF6-202ENST00000435070 MYO15BQ96JP2 1530 aa12.08□□□□□ -0.48
CPSF6-202ENST00000435070 CHIC1Q5VXU3 224 aa12.04□□□□□ -0.48
CPSF6-202ENST00000435070 LOC105371045A0A1W2PR82 267 aa11.95□□□□□ -0.5
CPSF6-202ENST00000435070 MYT1Q01538 1121 aa11.88□□□□□ -0.51
CPSF6-202ENST00000435070 DCAF8L2P0C7V8 631 aa11.86□□□□□ -0.51
CPSF6-202ENST00000435070 TRIM26Q12899 539 aaPredicted RBP11.86□□□□□ -0.51
CPSF6-202ENST00000435070 NEUROD1Q13562 356 aa11.78□□□□□ -0.52
CPSF6-202ENST00000435070 GTF3C3Q9Y5Q9 886 aa11.76□□□□□ -0.53
CPSF6-202ENST00000435070 ZEB1P37275 1124 aaPredicted RBP11.76□□□□□ -0.53
CPSF6-202ENST00000435070 ACIN1Q9UKV3 1341 aaKnown RBP11.75□□□□□ -0.53
CPSF6-202ENST00000435070 DCAF1Q9Y4B6 1507 aa11.71□□□□□ -0.54
CPSF6-202ENST00000435070 EHMT2Q96KQ7 1210 aa11.65□□□□□ -0.54
CPSF6-202ENST00000435070 CENPBP07199 599 aaPredicted RBP11.6□□□□□ -0.55
CPSF6-202ENST00000435070 YTHDC1Q96MU7 727 aaKnown RBP11.54□□□□□ -0.56
CPSF6-202ENST00000435070 CCDC180Q9P1Z9 1646 aa11.54□□□□□ -0.56
CPSF6-202ENST00000435070 FAM9AQ8IZU1 332 aaPredicted RBP11.54□□□□□ -0.56
CPSF6-202ENST00000435070 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.52□□□□□ -0.57
CPSF6-202ENST00000435070 DIEXFQ68CQ4 756 aaKnown RBP11.51□□□□□ -0.57
CPSF6-202ENST00000435070 CCER1Q8TC90 406 aaPredicted RBP11.48□□□□□ -0.57
CPSF6-202ENST00000435070 TTBK1Q5TCY1 1321 aaPredicted RBP11.38□□□□□ -0.59
CPSF6-202ENST00000435070 BCL11AQ9H165 835 aa11.32□□□□□ -0.6
CPSF6-202ENST00000435070 TRIM41Q8WV44 630 aa11.31□□□□□ -0.6
CPSF6-202ENST00000435070 MIER1Q8N108 512 aa11.22□□□□□ -0.61
CPSF6-202ENST00000435070 ZCCHC6Q5VYS8 1495 aaKnown RBP11.2□□□□□ -0.62
CPSF6-202ENST00000435070 ZNF316A6NFI3 1004 aaPredicted RBP11.19□□□□□ -0.62
CPSF6-202ENST00000435070 ANP32EQ9BTT0 268 aa11.16□□□□□ -0.62
CPSF6-202ENST00000435070 CSRNP3Q8WYN3 585 aa11.13□□□□□ -0.63
CPSF6-202ENST00000435070 TSHZ2Q9NRE2 1034 aa11.07□□□□□ -0.64
CPSF6-202ENST00000435070 SUPT16HQ9Y5B9 1047 aaKnown RBP11.07□□□□□ -0.64
CPSF6-202ENST00000435070 BCANQ96GW7 911 aa11.04□□□□□ -0.64
CPSF6-202ENST00000435070 HNRNPUL2Q1KMD3 747 aaKnown RBP10.97□□□□□ -0.65
CPSF6-202ENST00000435070 PRKCSHP14314 528 aaPredicted RBP10.95□□□□□ -0.66
CPSF6-202ENST00000435070 ERICH6Q7L0X2 663 aa10.92□□□□□ -0.66
CPSF6-202ENST00000435070 FKBP8Q14318 412 aa10.84□□□□□ -0.67
CPSF6-202ENST00000435070 ITGAEP38570 1179 aa10.83□□□□□ -0.68
CPSF6-202ENST00000435070 RBM19Q9Y4C8 960 aaKnown RBP10.82□□□□□ -0.68
CPSF6-202ENST00000435070 KCNH8Q96L42 1107 aa10.8□□□□□ -0.68
CPSF6-202ENST00000435070 CLSPNQ9HAW4 1339 aa10.8□□□□□ -0.68
CPSF6-202ENST00000435070 RSF1Q96T23 1441 aaPredicted RBP10.79□□□□□ -0.68
CPSF6-202ENST00000435070 UBTFP17480 764 aaKnown RBP10.79□□□□□ -0.68
CPSF6-202ENST00000435070 RB1CC1Q8TDY2 1594 aa10.76□□□□□ -0.69
CPSF6-202ENST00000435070 MSH5O43196 834 aa10.73□□□□□ -0.69
CPSF6-202ENST00000435070 RANGAP1P46060 587 aaPredicted RBP10.73□□□□□ -0.69
CPSF6-202ENST00000435070 NEFLP07196 543 aa10.72□□□□□ -0.69
CPSF6-202ENST00000435070 CEP162Q5TB80 1403 aa10.7□□□□□ -0.7
CPSF6-202ENST00000435070 APLP2Q06481 763 aa10.69□□□□□ -0.7
CPSF6-202ENST00000435070 ANO8Q9HCE9 1232 aaPredicted RBP10.68□□□□□ -0.7
CPSF6-202ENST00000435070 TRIM52Q96A61 297 aa10.66□□□□□ -0.7
CPSF6-202ENST00000435070 ABCC9O60706 1549 aa10.64□□□□□ -0.71
CPSF6-202ENST00000435070 DEKP35659 375 aaKnown RBP10.63□□□□□ -0.71
CPSF6-202ENST00000435070 IRX6P78412 446 aaPredicted RBP10.62□□□□□ -0.71
CPSF6-202ENST00000435070 WRNQ14191 1432 aaPredicted RBP eCLIP10.62□□□□□ -0.71
CPSF6-202ENST00000435070 DDX10Q13206 875 aaKnown RBP10.6□□□□□ -0.71
CPSF6-202ENST00000435070 NBR1Q14596 966 aa10.59□□□□□ -0.71
CPSF6-202ENST00000435070 CCDC136Q96JN2 1154 aa10.58□□□□□ -0.72
CPSF6-202ENST00000435070 HIRIP3Q9BW71 556 aaPredicted RBP10.55□□□□□ -0.72
CPSF6-202ENST00000435070 CDK11AQ9UQ88 783 aaPredicted RBP10.55□□□□□ -0.72
CPSF6-202ENST00000435070 SALL2Q9Y467 1007 aaPredicted RBP10.54□□□□□ -0.72
CPSF6-202ENST00000435070 SOGA1O94964 1423 aa10.54□□□□□ -0.72
CPSF6-202ENST00000435070 RTN4Q9NQC3 1192 aaKnown RBP10.54□□□□□ -0.72
CPSF6-202ENST00000435070 TNIKQ9UKE5 1360 aa10.54□□□□□ -0.72
CPSF6-202ENST00000435070 SCRIBQ14160 1630 aa10.53□□□□□ -0.72
CPSF6-202ENST00000435070 ATP1B4Q9UN42 357 aaPredicted RBP10.52□□□□□ -0.73
CPSF6-202ENST00000435070 CCDC88BA6NC98 1476 aa10.52□□□□□ -0.73
CPSF6-202ENST00000435070 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.49□□□□□ -0.73
CPSF6-202ENST00000435070 ABCC8Q09428 1581 aa10.49□□□□□ -0.73
CPSF6-202ENST00000435070 DHX57Q6P158 1386 aaKnown RBP10.49□□□□□ -0.73
CPSF6-202ENST00000435070 CECR2Q9BXF3 1484 aa10.49□□□□□ -0.73
CPSF6-202ENST00000435070 FANCIQ9NVI1 1328 aa10.48□□□□□ -0.73
CPSF6-202ENST00000435070 RUSC2Q8N2Y8 1516 aa10.47□□□□□ -0.73
CPSF6-202ENST00000435070 IL27Q8NEV9 243 aa10.43□□□□□ -0.74
CPSF6-202ENST00000435070 ANP32CO43423 234 aa10.42□□□□□ -0.74
CPSF6-202ENST00000435070 PAK3O75914 559 aaPredicted RBP10.42□□□□□ -0.74
CPSF6-202ENST00000435070 MYT1LQ9UL68 1186 aa10.42□□□□□ -0.74
CPSF6-202ENST00000435070 HNRNPUQ00839 825 aaKnown RBP eCLIP10.42□□□□□ -0.74
CPSF6-202ENST00000435070 MROH2BQ7Z745 1585 aa10.41□□□□□ -0.74
CPSF6-202ENST00000435070 CLIP1P30622 1438 aa10.4□□□□□ -0.75
CPSF6-202ENST00000435070 B4GALNT3Q6L9W6 998 aa10.4□□□□□ -0.75
CPSF6-202ENST00000435070 RTL5Q5HYW3 569 aaPredicted RBP10.39□□□□□ -0.75
CPSF6-202ENST00000435070 NOP58Q9Y2X3 529 aaKnown RBP10.39□□□□□ -0.75
CPSF6-202ENST00000435070 SIN3AQ96ST3 1273 aa10.38□□□□□ -0.75
CPSF6-202ENST00000435070 GOLGA3Q08378 1498 aa10.37□□□□□ -0.75
CPSF6-202ENST00000435070 WIZO95785 1651 aa10.36□□□□□ -0.75
CPSF6-202ENST00000435070 KANK4Q5T7N3 995 aaPredicted RBP10.35□□□□□ -0.75
CPSF6-202ENST00000435070 EIF5BO60841 1220 aaKnown RBP10.35□□□□□ -0.75
CPSF6-202ENST00000435070 PPP1R15AO75807 674 aaPredicted RBP10.32□□□□□ -0.76
CPSF6-202ENST00000435070 VPS8Q8N3P4 1428 aa10.32□□□□□ -0.76
CPSF6-202ENST00000435070 PPP4R2Q9NY27 417 aa10.3□□□□□ -0.76
CPSF6-202ENST00000435070 CCER2I3L3R5 266 aa10.3□□□□□ -0.76
CPSF6-202ENST00000435070 ERICH6BQ5W0A0 696 aa10.29□□□□□ -0.76
CPSF6-202ENST00000435070 NPM2Q86SE8 214 aaKnown RBP10.28□□□□□ -0.76
CPSF6-202ENST00000435070 ZBTB47Q9UFB7 747 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms