RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 DHX57Q6P158 1386 aaKnown RBP17.08■□□□□ 0.32
UBR4-207ENST00000425413 GAPVD1Q14C86 1478 aa17.07■□□□□ 0.32
UBR4-207ENST00000425413 TIAM1Q13009 1591 aa17.07■□□□□ 0.32
UBR4-207ENST00000425413 FHAD1B1AJZ9 1412 aa17.06■□□□□ 0.32
UBR4-207ENST00000425413 PHLDB1Q86UU1 1377 aa17.06■□□□□ 0.32
UBR4-207ENST00000425413 KIF21AQ7Z4S6 1674 aa17.05■□□□□ 0.32
UBR4-207ENST00000425413 LRRC9Q6ZRR7 1453 aa17.04■□□□□ 0.32
UBR4-207ENST00000425413 PCF11O94913 1555 aaKnown RBP17.04■□□□□ 0.32
UBR4-207ENST00000425413 SCAF1Q9H7N4 1312 aaKnown RBP17.04■□□□□ 0.32
UBR4-207ENST00000425413 AQRO60306 1485 aaKnown RBP eCLIP17.01■□□□□ 0.312e-7■■■■□ 23
UBR4-207ENST00000425413 ARID3CA6NKF2 412 aa17■□□□□ 0.31
UBR4-207ENST00000425413 CUL7Q14999 1698 aa17■□□□□ 0.31
UBR4-207ENST00000425413 YTHDC1Q96MU7 727 aaKnown RBP16.98■□□□□ 0.31
UBR4-207ENST00000425413 RAB3GAP2Q9H2M9 1393 aa16.98■□□□□ 0.31
UBR4-207ENST00000425413 ABCA5Q8WWZ7 1642 aa16.96■□□□□ 0.31
UBR4-207ENST00000425413 WDR97A6NE52 1622 aa16.95■□□□□ 0.3
UBR4-207ENST00000425413 NEUROD1Q13562 356 aa16.95■□□□□ 0.3
UBR4-207ENST00000425413 CASKIN1Q8WXD9 1431 aa16.94■□□□□ 0.3
UBR4-207ENST00000425413 MIER1Q8N108 512 aa16.94■□□□□ 0.3
UBR4-207ENST00000425413 MAP3K1Q13233 1512 aa16.93■□□□□ 0.3
UBR4-207ENST00000425413 MTUS2Q5JR59 1369 aa16.93■□□□□ 0.3
UBR4-207ENST00000425413 EFCAB5A4FU69 1503 aa16.93■□□□□ 0.3
UBR4-207ENST00000425413 FYCO1Q9BQS8 1478 aa16.92■□□□□ 0.3
UBR4-207ENST00000425413 FMN1Q68DA7 1419 aa16.92■□□□□ 0.3
UBR4-207ENST00000425413 CTTNBP2Q8WZ74 1663 aa16.92■□□□□ 0.3
UBR4-207ENST00000425413 CLSPNQ9HAW4 1339 aa16.9■□□□□ 0.3
UBR4-207ENST00000425413 TARBP1Q13395 1621 aaKnown RBP16.89■□□□□ 0.29
UBR4-207ENST00000425413 MRC2Q9UBG0 1479 aa16.89■□□□□ 0.29
UBR4-207ENST00000425413 SETD5Q9C0A6 1442 aa16.88■□□□□ 0.29
UBR4-207ENST00000425413 ACIN1Q9UKV3 1341 aaKnown RBP16.88■□□□□ 0.29
UBR4-207ENST00000425413 ZNF608Q9ULD9 1512 aaPredicted RBP16.87■□□□□ 0.29
UBR4-207ENST00000425413 SIN3AQ96ST3 1273 aa16.87■□□□□ 0.29
UBR4-207ENST00000425413 CFAP43Q8NDM7 1665 aa16.86■□□□□ 0.29
UBR4-207ENST00000425413 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
UBR4-207ENST00000425413 FBLN2P98095 1184 aa16.83■□□□□ 0.29
UBR4-207ENST00000425413 CENPBP07199 599 aaPredicted RBP16.83■□□□□ 0.28
UBR4-207ENST00000425413 ERCC6Q03468 1493 aa16.81■□□□□ 0.28
UBR4-207ENST00000425413 FGD6Q6ZV73 1430 aa16.8■□□□□ 0.28
UBR4-207ENST00000425413 SAMD9Q5K651 1589 aa16.79■□□□□ 0.28
UBR4-207ENST00000425413 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
UBR4-207ENST00000425413 CHIC2Q9UKJ5 165 aa16.79■□□□□ 0.28
UBR4-207ENST00000425413 MAPKBP1O60336 1514 aa16.77■□□□□ 0.28
UBR4-207ENST00000425413 PBRM1Q86U86 1689 aa16.76■□□□□ 0.27
UBR4-207ENST00000425413 NCOA2Q15596 1464 aa16.76■□□□□ 0.27
UBR4-207ENST00000425413 GTF3C3Q9Y5Q9 886 aa16.75■□□□□ 0.27
UBR4-207ENST00000425413 PTPRKQ15262 1439 aa16.74■□□□□ 0.27
UBR4-207ENST00000425413 ADAMTS12P58397 1594 aa16.74■□□□□ 0.27
UBR4-207ENST00000425413 RRP7BPQ9NSQ0 103 aa16.74■□□□□ 0.27
UBR4-207ENST00000425413 IFT140Q96RY7 1462 aa16.73■□□□□ 0.27
UBR4-207ENST00000425413 IQGAP2Q13576 1575 aa16.73■□□□□ 0.27
UBR4-207ENST00000425413 CHMP7Q8WUX9 453 aaPredicted RBP16.72■□□□□ 0.27
UBR4-207ENST00000425413 LRRIQ1Q96JM4 1722 aa16.72■□□□□ 0.27
UBR4-207ENST00000425413 HIRIP3Q9BW71 556 aaPredicted RBP16.71■□□□□ 0.27
UBR4-207ENST00000425413 CDK13Q14004 1512 aaKnown RBP16.71■□□□□ 0.27
UBR4-207ENST00000425413 MYOM3Q5VTT5 1437 aa16.7■□□□□ 0.26
UBR4-207ENST00000425413 MAGI3Q5TCQ9 1506 aa16.7■□□□□ 0.26
UBR4-207ENST00000425413 WDR62O43379 1518 aa16.68■□□□□ 0.26
UBR4-207ENST00000425413 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.66■□□□□ 0.26
UBR4-207ENST00000425413 EPRSP07814 1512 aaKnown RBP16.65■□□□□ 0.26
UBR4-207ENST00000425413 CCDC18Q5T9S5 1454 aa16.64■□□□□ 0.26
UBR4-207ENST00000425413 TRIM52Q96A61 297 aa16.64■□□□□ 0.25
UBR4-207ENST00000425413 EHBP1L1Q8N3D4 1523 aa16.64■□□□□ 0.25
UBR4-207ENST00000425413 EIF4G3O43432 1585 aaKnown RBP16.63■□□□□ 0.25
UBR4-207ENST00000425413 SUPT6HQ7KZ85 1726 aaKnown RBP16.63■□□□□ 0.25
UBR4-207ENST00000425413 GRIN2AQ12879 1464 aa16.62■□□□□ 0.25
UBR4-207ENST00000425413 KIAA0586Q9BVV6 1533 aa16.61■□□□□ 0.25
UBR4-207ENST00000425413 HECW1Q76N89 1606 aa16.6■□□□□ 0.25
UBR4-207ENST00000425413 NAIPQ13075 1403 aa16.6■□□□□ 0.25
UBR4-207ENST00000425413 UGGT2Q9NYU1 1516 aa16.6■□□□□ 0.25
UBR4-207ENST00000425413 HFM1A2PYH4 1435 aa16.6■□□□□ 0.25
UBR4-207ENST00000425413 ZNF644Q9H582 1327 aaPredicted RBP16.6■□□□□ 0.25
UBR4-207ENST00000425413 THOC2Q8NI27 1593 aaKnown RBP16.6■□□□□ 0.25
UBR4-207ENST00000425413 DDX10Q13206 875 aaKnown RBP16.59■□□□□ 0.25
UBR4-207ENST00000425413 DISP1Q96F81 1524 aa16.59■□□□□ 0.25
UBR4-207ENST00000425413 PTPN23Q9H3S7 1636 aa16.58■□□□□ 0.25
UBR4-207ENST00000425413 PELP1Q8IZL8 1130 aaKnown RBP16.57■□□□□ 0.24
UBR4-207ENST00000425413 TONSLQ96HA7 1378 aa16.57■□□□□ 0.24
UBR4-207ENST00000425413 PPP1R15AO75807 674 aaPredicted RBP16.57■□□□□ 0.24
UBR4-207ENST00000425413 ZNF777Q9ULD5 760 aaPredicted RBP16.56■□□□□ 0.24
UBR4-207ENST00000425413 FOXD1Q16676 465 aa16.56■□□□□ 0.24
UBR4-207ENST00000425413 JPH4Q96JJ6 628 aa16.55■□□□□ 0.24
UBR4-207ENST00000425413 KCNH8Q96L42 1107 aa16.54■□□□□ 0.24
UBR4-207ENST00000425413 UACAQ9BZF9 1416 aa16.54■□□□□ 0.24
UBR4-207ENST00000425413 KIAA0556O60303 1618 aa16.53■□□□□ 0.24
UBR4-207ENST00000425413 NUP153P49790 1475 aaKnown RBP16.53■□□□□ 0.24
UBR4-207ENST00000425413 PLB1Q6P1J6 1458 aa16.53■□□□□ 0.24
UBR4-207ENST00000425413 ARHGEF11O15085 1522 aa16.53■□□□□ 0.24
UBR4-207ENST00000425413 CDK11AQ9UQ88 783 aaPredicted RBP16.52■□□□□ 0.24
UBR4-207ENST00000425413 PRG4Q92954 1404 aaPredicted RBP16.51■□□□□ 0.23
UBR4-207ENST00000425413 SYNJ2O15056 1496 aa16.5■□□□□ 0.23
UBR4-207ENST00000425413 CEP170Q5SW79 1584 aa16.5■□□□□ 0.23
UBR4-207ENST00000425413 MAGI1Q96QZ7 1491 aaPredicted RBP16.5■□□□□ 0.23
UBR4-207ENST00000425413 TIMELESSQ9UNS1 1208 aa16.48■□□□□ 0.23
UBR4-207ENST00000425413 CFDP1Q9UEE9 299 aaPredicted RBP16.47■□□□□ 0.23
UBR4-207ENST00000425413 TCOF1Q13428 1488 aaKnown RBP16.46■□□□□ 0.23
UBR4-207ENST00000425413 MPHOSPH9Q99550 1183 aa16.46■□□□□ 0.23
UBR4-207ENST00000425413 KDM6BO15054 1643 aa16.46■□□□□ 0.23
UBR4-207ENST00000425413 MIA2Q96PC5 1412 aa16.45■□□□□ 0.22
UBR4-207ENST00000425413 RAPGEF6Q8TEU7 1601 aa16.45■□□□□ 0.22
UBR4-207ENST00000425413 CARMIL2Q6F5E8 1435 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms