RNA–Protein interactions for RNA: ENST00000409494.5

PCDHA13-202, Transcript of protocadherin alpha 13, humanhuman

TSL 1 (best) BASIC

Gene PCDHA13, Length 4,884 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA13-202ENST00000409494 SMARCA4P51532 1647 aa22.98■■□□□ 1.27
PCDHA13-202ENST00000409494 CLSPNQ9HAW4 1339 aa22.97■■□□□ 1.27
PCDHA13-202ENST00000409494 ZBTB47Q9UFB7 747 aaPredicted RBP22.97■■□□□ 1.27
PCDHA13-202ENST00000409494 WIZO95785 1651 aa22.87■■□□□ 1.25
PCDHA13-202ENST00000409494 CCNB3Q8WWL7 1395 aa22.87■■□□□ 1.25
PCDHA13-202ENST00000409494 SCAF1Q9H7N4 1312 aaKnown RBP22.85■■□□□ 1.25
PCDHA13-202ENST00000409494 RRP7BPQ9NSQ0 103 aa22.84■■□□□ 1.25
PCDHA13-202ENST00000409494 EIF4G1Q04637 1599 aaKnown RBP22.84■■□□□ 1.25
PCDHA13-202ENST00000409494 FMN1Q68DA7 1419 aa22.81■■□□□ 1.24
PCDHA13-202ENST00000409494 CANXP27824 592 aaKnown RBP22.81■■□□□ 1.24
PCDHA13-202ENST00000409494 RTL5Q5HYW3 569 aaPredicted RBP22.77■■□□□ 1.24
PCDHA13-202ENST00000409494 TDRD9Q8NDG6 1382 aaKnown RBP22.77■■□□□ 1.23
PCDHA13-202ENST00000409494 EIF4G2P78344 907 aaKnown RBP eCLIP22.76■■□□□ 1.23
PCDHA13-202ENST00000409494 CDCA8Q53HL2 280 aa22.75■■□□□ 1.23
PCDHA13-202ENST00000409494 PPP1R15AO75807 674 aaPredicted RBP22.75■■□□□ 1.23
PCDHA13-202ENST00000409494 NCAPD3P42695 1498 aa22.75■■□□□ 1.23
PCDHA13-202ENST00000409494 SLC24A1O60721 1099 aa22.74■■□□□ 1.23
PCDHA13-202ENST00000409494 VPS8Q8N3P4 1428 aa22.74■■□□□ 1.23
PCDHA13-202ENST00000409494 KDM2AQ9Y2K7 1162 aa22.71■■□□□ 1.23
PCDHA13-202ENST00000409494 RAPGEF2Q9Y4G8 1499 aa22.71■■□□□ 1.23
PCDHA13-202ENST00000409494 FANCD2Q9BXW9 1451 aa22.7■■□□□ 1.23
PCDHA13-202ENST00000409494 PLPPR3Q6T4P5 718 aa22.7■■□□□ 1.22
PCDHA13-202ENST00000409494 ARID4BQ4LE39 1312 aaPredicted RBP22.68■■□□□ 1.22
PCDHA13-202ENST00000409494 KANK1Q14678 1352 aa22.68■■□□□ 1.22
PCDHA13-202ENST00000409494 MIER1Q8N108 512 aa22.67■■□□□ 1.22
PCDHA13-202ENST00000409494 TIMELESSQ9UNS1 1208 aa22.65■■□□□ 1.22
PCDHA13-202ENST00000409494 TMC1Q8TDI8 760 aa22.63■■□□□ 1.21
PCDHA13-202ENST00000409494 DDX10Q13206 875 aaKnown RBP22.63■■□□□ 1.21
PCDHA13-202ENST00000409494 HDGFP51858 240 aaKnown RBP22.62■■□□□ 1.21
PCDHA13-202ENST00000409494 ARHGAP35Q9NRY4 1499 aa22.6■■□□□ 1.21
PCDHA13-202ENST00000409494 FKBP8Q14318 412 aa22.6■■□□□ 1.21
PCDHA13-202ENST00000409494 EFCAB2Q5VUJ9 269 aa22.6■■□□□ 1.21
PCDHA13-202ENST00000409494 RSPH4AQ5TD94 716 aa22.59■■□□□ 1.21
PCDHA13-202ENST00000409494 WDR43Q15061 677 aaKnown RBP eCLIP22.57■■□□□ 1.2
PCDHA13-202ENST00000409494 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.52■■□□□ 1.2
PCDHA13-202ENST00000409494 JPH4Q96JJ6 628 aa22.51■■□□□ 1.19
PCDHA13-202ENST00000409494 RGL3Q3MIN7 710 aa22.49■■□□□ 1.19
PCDHA13-202ENST00000409494 HNRNPUQ00839 825 aaKnown RBP eCLIP22.47■■□□□ 1.19
PCDHA13-202ENST00000409494 TRHP20396 242 aaPredicted RBP22.44■■□□□ 1.18
PCDHA13-202ENST00000409494 CCDC18Q5T9S5 1454 aa22.44■■□□□ 1.18
PCDHA13-202ENST00000409494 MRS2Q9HD23 443 aa22.44■■□□□ 1.18
PCDHA13-202ENST00000409494 C14orf37Q86TY3 774 aa22.44■■□□□ 1.18
PCDHA13-202ENST00000409494 CFAP53Q96M91 514 aa22.43■■□□□ 1.18
PCDHA13-202ENST00000409494 CARD11Q9BXL7 1154 aa22.43■■□□□ 1.18
PCDHA13-202ENST00000409494 FAM9BQ8IZU0 186 aa22.42■■□□□ 1.18
PCDHA13-202ENST00000409494 ANKRD30AQ9BXX3 1397 aa22.42■■□□□ 1.18
PCDHA13-202ENST00000409494 SETD5Q9C0A6 1442 aa22.41■■□□□ 1.18
PCDHA13-202ENST00000409494 KNSTRNQ9Y448 316 aa22.37■■□□□ 1.17
PCDHA13-202ENST00000409494 GAPVD1Q14C86 1478 aa22.37■■□□□ 1.17
PCDHA13-202ENST00000409494 HMGXB3Q12766 1538 aa22.35■■□□□ 1.17
PCDHA13-202ENST00000409494 OSCARQ8IYS5 282 aa22.35■■□□□ 1.17
PCDHA13-202ENST00000409494 POGKQ9P215 609 aa22.35■■□□□ 1.17
PCDHA13-202ENST00000409494 ANP32AP39687 249 aaKnown RBP22.34■■□□□ 1.17
PCDHA13-202ENST00000409494 FGD5Q6ZNL6 1462 aa22.34■■□□□ 1.17
PCDHA13-202ENST00000409494 PTPRGP23470 1445 aa22.32■■□□□ 1.16
PCDHA13-202ENST00000409494 FHOD3Q2V2M9 1422 aa22.29■■□□□ 1.16
PCDHA13-202ENST00000409494 CFTRP13569 1480 aa22.29■■□□□ 1.16
PCDHA13-202ENST00000409494 NPM2Q86SE8 214 aaKnown RBP22.28■■□□□ 1.16
PCDHA13-202ENST00000409494 HIRIP3Q9BW71 556 aaPredicted RBP22.26■■□□□ 1.15
PCDHA13-202ENST00000409494 IGF1RP08069 1367 aa22.26■■□□□ 1.15
PCDHA13-202ENST00000409494 TMF1P82094 1093 aa22.25■■□□□ 1.15
PCDHA13-202ENST00000409494 KANK4Q5T7N3 995 aaPredicted RBP22.25■■□□□ 1.15
PCDHA13-202ENST00000409494 NUDCQ9Y266 331 aa22.25■■□□□ 1.15
PCDHA13-202ENST00000409494 SPAG9O60271 1321 aaKnown RBP22.23■■□□□ 1.15
PCDHA13-202ENST00000409494 GGT6Q6P531 493 aa22.23■■□□□ 1.15
PCDHA13-202ENST00000409494 UPF2Q9HAU5 1272 aaKnown RBP22.22■■□□□ 1.15
PCDHA13-202ENST00000409494 PKD2Q13563 968 aa22.2■■□□□ 1.15
PCDHA13-202ENST00000409494 DCAF11Q8TEB1 546 aa22.2■■□□□ 1.15
PCDHA13-202ENST00000409494 PNNQ9H307 717 aaKnown RBP22.2■■□□□ 1.14
PCDHA13-202ENST00000409494 HAP1P54257 671 aaPredicted RBP22.2■■□□□ 1.14
PCDHA13-202ENST00000409494 NUP155O75694 1391 aa22.19■■□□□ 1.14
PCDHA13-202ENST00000409494 GRIN2BQ13224 1484 aa22.18■■□□□ 1.14
PCDHA13-202ENST00000409494 SIN3AQ96ST3 1273 aa22.17■■□□□ 1.14
PCDHA13-202ENST00000409494 MRC2Q9UBG0 1479 aa22.15■■□□□ 1.14
PCDHA13-202ENST00000409494 MLECQ14165 292 aa22.14■■□□□ 1.14
PCDHA13-202ENST00000409494 CC2D2AQ9P2K1 1620 aa22.14■■□□□ 1.13
PCDHA13-202ENST00000409494 MYH16Q9H6N6 1097 aa22.13■■□□□ 1.13
PCDHA13-202ENST00000409494 MPHOSPH9Q99550 1183 aa22.13■■□□□ 1.13
PCDHA13-202ENST00000409494 SALL2Q9Y467 1007 aaPredicted RBP22.13■■□□□ 1.13
PCDHA13-202ENST00000409494 IFT140Q96RY7 1462 aa22.12■■□□□ 1.13
PCDHA13-202ENST00000409494 KIF3BO15066 747 aa22.11■■□□□ 1.13
PCDHA13-202ENST00000409494 CCDC136Q96JN2 1154 aa22.1■■□□□ 1.13
PCDHA13-202ENST00000409494 RAD54L2Q9Y4B4 1467 aa22.1■■□□□ 1.13
PCDHA13-202ENST00000409494 MAPK8IP3Q9UPT6 1336 aa22.08■■□□□ 1.13
PCDHA13-202ENST00000409494 BCL11AQ9H165 835 aa22.08■■□□□ 1.13
PCDHA13-202ENST00000409494 RAB3GAP2Q9H2M9 1393 aa22.08■■□□□ 1.13
PCDHA13-202ENST00000409494 HNRNPMP52272 730 aaKnown RBP eCLIP22.06■■□□□ 1.12
PCDHA13-202ENST00000409494 IRX6P78412 446 aaPredicted RBP22.06■■□□□ 1.12
PCDHA13-202ENST00000409494 EIF3AQ14152 1382 aaKnown RBP22.04■■□□□ 1.12
PCDHA13-202ENST00000409494 ZBTB7CA1YPR0 619 aa22.04■■□□□ 1.12
PCDHA13-202ENST00000409494 RUSC2Q8N2Y8 1516 aa22.04■■□□□ 1.12
PCDHA13-202ENST00000409494 CHMP4BQ9H444 224 aaKnown RBP22.03■■□□□ 1.12
PCDHA13-202ENST00000409494 ERICH3Q5RHP9 1530 aa22.02■■□□□ 1.12
PCDHA13-202ENST00000409494 EIF5BO60841 1220 aaKnown RBP22.02■■□□□ 1.12
PCDHA13-202ENST00000409494 WASHC2CQ9Y4E1 1318 aa22.02■■□□□ 1.12
PCDHA13-202ENST00000409494 EID1Q9Y6B2 187 aa22.01■■□□□ 1.11
PCDHA13-202ENST00000409494 SRPK2P78362 688 aaKnown RBP21.99■■□□□ 1.11
PCDHA13-202ENST00000409494 HDGFL2Q7Z4V5 671 aaPredicted RBP21.99■■□□□ 1.11
PCDHA13-202ENST00000409494 AQRO60306 1485 aaKnown RBP eCLIP21.99■■□□□ 1.11
PCDHA13-202ENST00000409494 UACAQ9BZF9 1416 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms