RNA–Protein interactions for RNA: ENST00000409494.5

PCDHA13-202, Transcript of protocadherin alpha 13, humanhuman

TSL 1 (best) BASIC

Gene PCDHA13, Length 4,884 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA13-202ENST00000409494 NISCHQ9Y2I1 1504 aa30.37■■■□□ 2.45
PCDHA13-202ENST00000409494 DCAF8L2P0C7V8 631 aa29.74■■■□□ 2.35
PCDHA13-202ENST00000409494 SUPT5HO00267 1087 aaKnown RBP27.89■■■□□ 2.05
PCDHA13-202ENST00000409494 SHROOM4Q9ULL8 1493 aa27.65■■■□□ 2.02
PCDHA13-202ENST00000409494 FAM9AQ8IZU1 332 aaPredicted RBP26.74■■□□□ 1.87
PCDHA13-202ENST00000409494 APLP2Q06481 763 aa26.59■■□□□ 1.85
PCDHA13-202ENST00000409494 TRIM41Q8WV44 630 aa26.22■■□□□ 1.79
PCDHA13-202ENST00000409494 EHMT2Q96KQ7 1210 aa26.21■■□□□ 1.79
PCDHA13-202ENST00000409494 ABCC9O60706 1549 aa25.95■■□□□ 1.75
PCDHA13-202ENST00000409494 PCGF6Q9BYE7 350 aa25.83■■□□□ 1.73
PCDHA13-202ENST00000409494 UBTFP17480 764 aaKnown RBP25.75■■□□□ 1.71
PCDHA13-202ENST00000409494 ATP1B4Q9UN42 357 aaPredicted RBP25.51■■□□□ 1.67
PCDHA13-202ENST00000409494 RANGAP1P46060 587 aaPredicted RBP25.49■■□□□ 1.67
PCDHA13-202ENST00000409494 CCDC180Q9P1Z9 1646 aa25.48■■□□□ 1.67
PCDHA13-202ENST00000409494 ZEB1P37275 1124 aaPredicted RBP25.43■■□□□ 1.66
PCDHA13-202ENST00000409494 PABPN1Q86U42 306 aaKnown RBP eCLIP25.38■■□□□ 1.65
PCDHA13-202ENST00000409494 PELP1Q8IZL8 1130 aaKnown RBP25.3■■□□□ 1.64
PCDHA13-202ENST00000409494 TTBK1Q5TCY1 1321 aaPredicted RBP25.29■■□□□ 1.64
PCDHA13-202ENST00000409494 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
PCDHA13-202ENST00000409494 CHIC1Q5VXU3 224 aa25.15■■□□□ 1.62
PCDHA13-202ENST00000409494 CCER1Q8TC90 406 aaPredicted RBP25.11■■□□□ 1.61
PCDHA13-202ENST00000409494 HRCP23327 699 aa25.02■■□□□ 1.6
PCDHA13-202ENST00000409494 CENPBP07199 599 aaPredicted RBP24.94■■□□□ 1.58
PCDHA13-202ENST00000409494 TRIM26Q12899 539 aaPredicted RBP24.94■■□□□ 1.58
PCDHA13-202ENST00000409494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.93■■□□□ 1.58
PCDHA13-202ENST00000409494 HNRNPUL2Q1KMD3 747 aaKnown RBP24.93■■□□□ 1.58
PCDHA13-202ENST00000409494 SCRIBQ14160 1630 aa24.85■■□□□ 1.57
PCDHA13-202ENST00000409494 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
PCDHA13-202ENST00000409494 LOC105371045A0A1W2PR82 267 aa24.75■■□□□ 1.55
PCDHA13-202ENST00000409494 NACADO15069 1562 aa24.71■■□□□ 1.55
PCDHA13-202ENST00000409494 MYT1LQ9UL68 1186 aa24.7■■□□□ 1.54
PCDHA13-202ENST00000409494 PPARGC1BQ86YN6 1023 aaKnown RBP24.61■■□□□ 1.53
PCDHA13-202ENST00000409494 ITGAEP38570 1179 aa24.46■■□□□ 1.51
PCDHA13-202ENST00000409494 DCAF1Q9Y4B6 1507 aa24.45■■□□□ 1.5
PCDHA13-202ENST00000409494 CSRNP3Q8WYN3 585 aa24.41■■□□□ 1.5
PCDHA13-202ENST00000409494 FBLN2P98095 1184 aa24.34■■□□□ 1.49
PCDHA13-202ENST00000409494 YTHDC1Q96MU7 727 aaKnown RBP24.33■■□□□ 1.49
PCDHA13-202ENST00000409494 CDK11AQ9UQ88 783 aaPredicted RBP24.21■■□□□ 1.47
PCDHA13-202ENST00000409494 FAM50AQ14320 339 aaKnown RBP24.21■■□□□ 1.47
PCDHA13-202ENST00000409494 NEFLP07196 543 aa24.2■■□□□ 1.47
PCDHA13-202ENST00000409494 MYT1Q01538 1121 aa24.09■■□□□ 1.45
PCDHA13-202ENST00000409494 TRIM52Q96A61 297 aa24.03■■□□□ 1.44
PCDHA13-202ENST00000409494 ERICH6Q7L0X2 663 aa24.01■■□□□ 1.43
PCDHA13-202ENST00000409494 RSF1Q96T23 1441 aaPredicted RBP24.01■■□□□ 1.43
PCDHA13-202ENST00000409494 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
PCDHA13-202ENST00000409494 BAZ1AQ9NRL2 1556 aaPredicted RBP23.99■■□□□ 1.43
PCDHA13-202ENST00000409494 MYO15BQ96JP2 1530 aa23.97■■□□□ 1.43
PCDHA13-202ENST00000409494 EEA1Q15075 1411 aa23.94■■□□□ 1.42
PCDHA13-202ENST00000409494 NPM1P06748 294 aaKnown RBP eCLIP23.92■■□□□ 1.42
PCDHA13-202ENST00000409494 DIEXFQ68CQ4 756 aaKnown RBP23.92■■□□□ 1.42
PCDHA13-202ENST00000409494 POLR3GLQ9BT43 218 aa23.92■■□□□ 1.42
PCDHA13-202ENST00000409494 P3H3Q8IVL6 736 aa23.85■■□□□ 1.41
PCDHA13-202ENST00000409494 CHMP7Q8WUX9 453 aaPredicted RBP23.77■■□□□ 1.4
PCDHA13-202ENST00000409494 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
PCDHA13-202ENST00000409494 SLC4A1APQ9BWU0 796 aaKnown RBP23.66■■□□□ 1.38
PCDHA13-202ENST00000409494 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
PCDHA13-202ENST00000409494 ZNF777Q9ULD5 760 aaPredicted RBP23.62■■□□□ 1.37
PCDHA13-202ENST00000409494 NEUROD1Q13562 356 aa23.62■■□□□ 1.37
PCDHA13-202ENST00000409494 ACIN1Q9UKV3 1341 aaKnown RBP23.62■■□□□ 1.37
PCDHA13-202ENST00000409494 ESF1Q9H501 851 aaKnown RBP23.6■■□□□ 1.37
PCDHA13-202ENST00000409494 SMARCA2P51531 1590 aa23.6■■□□□ 1.37
PCDHA13-202ENST00000409494 ARID3CA6NKF2 412 aa23.56■■□□□ 1.36
PCDHA13-202ENST00000409494 GOLGA3Q08378 1498 aa23.54■■□□□ 1.36
PCDHA13-202ENST00000409494 ERCC6Q03468 1493 aa23.53■■□□□ 1.36
PCDHA13-202ENST00000409494 CLIP1P30622 1438 aa23.51■■□□□ 1.35
PCDHA13-202ENST00000409494 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
PCDHA13-202ENST00000409494 MTUS2Q5JR59 1369 aa23.49■■□□□ 1.35
PCDHA13-202ENST00000409494 GTF3C3Q9Y5Q9 886 aa23.49■■□□□ 1.35
PCDHA13-202ENST00000409494 TSPY4P0CV99 314 aa23.47■■□□□ 1.35
PCDHA13-202ENST00000409494 TSPY10P0CW01 314 aa23.47■■□□□ 1.35
PCDHA13-202ENST00000409494 ZNF316A6NFI3 1004 aaPredicted RBP23.46■■□□□ 1.35
PCDHA13-202ENST00000409494 ZNF326Q5BKZ1 582 aaKnown RBP23.44■■□□□ 1.34
PCDHA13-202ENST00000409494 CEP164Q9UPV0 1460 aa23.42■■□□□ 1.34
PCDHA13-202ENST00000409494 ANP32CO43423 234 aa23.4■■□□□ 1.34
PCDHA13-202ENST00000409494 PDS5BQ9NTI5 1447 aa23.39■■□□□ 1.34
PCDHA13-202ENST00000409494 PLEKHD1A6NEE1 506 aa23.37■■□□□ 1.33
PCDHA13-202ENST00000409494 BCANQ96GW7 911 aa23.34■■□□□ 1.33
PCDHA13-202ENST00000409494 CNGB1Q14028 1251 aaPredicted RBP23.33■■□□□ 1.33
PCDHA13-202ENST00000409494 TNIKQ9UKE5 1360 aa23.33■■□□□ 1.33
PCDHA13-202ENST00000409494 TONSLQ96HA7 1378 aa23.3■■□□□ 1.32
PCDHA13-202ENST00000409494 MROH2BQ7Z745 1585 aa23.29■■□□□ 1.32
PCDHA13-202ENST00000409494 DAXXQ9UER7 740 aaPredicted RBP23.27■■□□□ 1.32
PCDHA13-202ENST00000409494 STAG3Q9UJ98 1225 aa23.27■■□□□ 1.32
PCDHA13-202ENST00000409494 NEFMP07197 916 aa23.27■■□□□ 1.32
PCDHA13-202ENST00000409494 CEP162Q5TB80 1403 aa23.23■■□□□ 1.31
PCDHA13-202ENST00000409494 CCDC88BA6NC98 1476 aa23.19■■□□□ 1.3
PCDHA13-202ENST00000409494 TOP2AP11388 1531 aaKnown RBP23.18■■□□□ 1.3
PCDHA13-202ENST00000409494 FHAD1B1AJZ9 1412 aa23.17■■□□□ 1.3
PCDHA13-202ENST00000409494 CARMIL1Q5VZK9 1371 aa23.16■■□□□ 1.3
PCDHA13-202ENST00000409494 CUX2O14529 1486 aa23.14■■□□□ 1.3
PCDHA13-202ENST00000409494 CHGAP10645 457 aaKnown RBP23.12■■□□□ 1.29
PCDHA13-202ENST00000409494 CADPSQ9ULU8 1353 aa23.12■■□□□ 1.29
PCDHA13-202ENST00000409494 CHIC2Q9UKJ5 165 aa23.09■■□□□ 1.29
PCDHA13-202ENST00000409494 ATAD2BQ9ULI0 1458 aa23.07■■□□□ 1.28
PCDHA13-202ENST00000409494 CFDP1Q9UEE9 299 aaPredicted RBP23.05■■□□□ 1.28
PCDHA13-202ENST00000409494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.04■■□□□ 1.28
PCDHA13-202ENST00000409494 KCNH8Q96L42 1107 aa23.03■■□□□ 1.28
PCDHA13-202ENST00000409494 SOGA1O94964 1423 aa23.01■■□□□ 1.27
PCDHA13-202ENST00000409494 CARMIL2Q6F5E8 1435 aa23■■□□□ 1.27
PCDHA13-202ENST00000409494 ABCC8Q09428 1581 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms