RNA–Protein interactions for RNA: ENST00000409478.5

R3HDM1-202, Transcript of R3H domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene R3HDM1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-202ENST00000409478 WDR97A6NE52 1622 aa8.06□□□□□ -1.12
R3HDM1-202ENST00000409478 RAPGEF2Q9Y4G8 1499 aa8.06□□□□□ -1.12
R3HDM1-202ENST00000409478 RAB3GAP2Q9H2M9 1393 aa8.04□□□□□ -1.12
R3HDM1-202ENST00000409478 SMARCA4P51532 1647 aa8.04□□□□□ -1.12
R3HDM1-202ENST00000409478 ARAP1Q96P48 1450 aa8.03□□□□□ -1.12
R3HDM1-202ENST00000409478 ANP32AP39687 249 aaKnown RBP8.02□□□□□ -1.13
R3HDM1-202ENST00000409478 HNRNPUQ00839 825 aaKnown RBP eCLIP8.02□□□□□ -1.13
R3HDM1-202ENST00000409478 SYNJ1O43426 1573 aa8.02□□□□□ -1.13
R3HDM1-202ENST00000409478 IRX6P78412 446 aaPredicted RBP8.01□□□□□ -1.13
R3HDM1-202ENST00000409478 KANK4Q5T7N3 995 aaPredicted RBP8.01□□□□□ -1.13
R3HDM1-202ENST00000409478 ERICH3Q5RHP9 1530 aa8.01□□□□□ -1.13
R3HDM1-202ENST00000409478 IPO9Q96P70 1041 aaKnown RBP8.01□□□□□ -1.13
R3HDM1-202ENST00000409478 SETD5Q9C0A6 1442 aa8.01□□□□□ -1.13
R3HDM1-202ENST00000409478 PAK3O75914 559 aaPredicted RBP8□□□□□ -1.13
R3HDM1-202ENST00000409478 ZBTB47Q9UFB7 747 aaPredicted RBP7.99□□□□□ -1.13
R3HDM1-202ENST00000409478 IL27Q8NEV9 243 aa7.99□□□□□ -1.13
R3HDM1-202ENST00000409478 CCDC136Q96JN2 1154 aa7.99□□□□□ -1.13
R3HDM1-202ENST00000409478 USP35Q9P2H5 1018 aa7.99□□□□□ -1.13
R3HDM1-202ENST00000409478 WASHC2AQ641Q2 1341 aa7.98□□□□□ -1.13
R3HDM1-202ENST00000409478 C11orf95C9JLR9 678 aaPredicted RBP7.97□□□□□ -1.13
R3HDM1-202ENST00000409478 RANGAP1P46060 587 aaPredicted RBP7.97□□□□□ -1.13
R3HDM1-202ENST00000409478 B4GALNT3Q6L9W6 998 aa7.96□□□□□ -1.13
R3HDM1-202ENST00000409478 SIN3AQ96ST3 1273 aa7.95□□□□□ -1.14
R3HDM1-202ENST00000409478 PRXQ9BXM0 1461 aa7.94□□□□□ -1.14
R3HDM1-202ENST00000409478 MAP3K1Q13233 1512 aa7.94□□□□□ -1.14
R3HDM1-202ENST00000409478 RTN4Q9NQC3 1192 aaKnown RBP7.94□□□□□ -1.14
R3HDM1-202ENST00000409478 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.94□□□□□ -1.14
R3HDM1-202ENST00000409478 WASHC2CQ9Y4E1 1318 aa7.93□□□□□ -1.14
R3HDM1-202ENST00000409478 ZBED9Q6R2W3 1325 aa7.93□□□□□ -1.14
R3HDM1-202ENST00000409478 HIRIP3Q9BW71 556 aaPredicted RBP7.93□□□□□ -1.14
R3HDM1-202ENST00000409478 TONSLQ96HA7 1378 aa7.92□□□□□ -1.14
R3HDM1-202ENST00000409478 FHAD1B1AJZ9 1412 aa7.92□□□□□ -1.14
R3HDM1-202ENST00000409478 NCAPD3P42695 1498 aa7.91□□□□□ -1.14
R3HDM1-202ENST00000409478 PPM1GO15355 546 aaPredicted RBP7.91□□□□□ -1.14
R3HDM1-202ENST00000409478 TOP2BQ02880 1626 aa7.9□□□□□ -1.14
R3HDM1-202ENST00000409478 TIAM1Q13009 1591 aa7.89□□□□□ -1.15
R3HDM1-202ENST00000409478 NEFMP07197 916 aa7.89□□□□□ -1.15
R3HDM1-202ENST00000409478 UNC13AQ9UPW8 1703 aa7.89□□□□□ -1.15
R3HDM1-202ENST00000409478 PEG3Q9GZU2 1588 aa7.89□□□□□ -1.15
R3HDM1-202ENST00000409478 BICRAQ9NZM4 1560 aa7.89□□□□□ -1.15
R3HDM1-202ENST00000409478 ARHGAP35Q9NRY4 1499 aa7.88□□□□□ -1.15
R3HDM1-202ENST00000409478 RSPH6AQ9H0K4 717 aa7.88□□□□□ -1.15
R3HDM1-202ENST00000409478 NCOA2Q15596 1464 aa7.87□□□□□ -1.15
R3HDM1-202ENST00000409478 SMG6Q86US8 1419 aaKnown RBP7.87□□□□□ -1.15
R3HDM1-202ENST00000409478 BIVM-ERCC5R4GMW8 1640 aa7.87□□□□□ -1.15
R3HDM1-202ENST00000409478 CNTLNQ9NXG0 1405 aa7.87□□□□□ -1.15
R3HDM1-202ENST00000409478 LRRC9Q6ZRR7 1453 aa7.86□□□□□ -1.15
R3HDM1-202ENST00000409478 EIF5BO60841 1220 aaKnown RBP7.86□□□□□ -1.15
R3HDM1-202ENST00000409478 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.86□□□□□ -1.15
R3HDM1-202ENST00000409478 RNF123Q5XPI4 1314 aa7.85□□□□□ -1.15
R3HDM1-202ENST00000409478 GSE1Q14687 1217 aa7.85□□□□□ -1.15
R3HDM1-202ENST00000409478 PKNOX2Q96KN3 472 aa7.84□□□□□ -1.15
R3HDM1-202ENST00000409478 FAM50AQ14320 339 aaKnown RBP7.84□□□□□ -1.15
R3HDM1-202ENST00000409478 GLIPR1L2Q4G1C9 344 aa7.84□□□□□ -1.15
R3HDM1-202ENST00000409478 PHLDB1Q86UU1 1377 aa7.84□□□□□ -1.15
R3HDM1-202ENST00000409478 TCERG1O14776 1098 aaKnown RBP7.83□□□□□ -1.16
R3HDM1-202ENST00000409478 FAM9BQ8IZU0 186 aa7.83□□□□□ -1.16
R3HDM1-202ENST00000409478 MRS2Q9HD23 443 aa7.83□□□□□ -1.16
R3HDM1-202ENST00000409478 PRKRIP1Q9H875 184 aaPredicted RBP7.83□□□□□ -1.16
R3HDM1-202ENST00000409478 DDRGK1Q96HY6 314 aa7.83□□□□□ -1.16
R3HDM1-202ENST00000409478 NUDCQ9Y266 331 aa7.83□□□□□ -1.16
R3HDM1-202ENST00000409478 LAS1LQ9Y4W2 734 aaKnown RBP7.83□□□□□ -1.16
R3HDM1-202ENST00000409478 UACAQ9BZF9 1416 aa7.82□□□□□ -1.16
R3HDM1-202ENST00000409478 BRPF3Q9ULD4 1205 aa7.82□□□□□ -1.16
R3HDM1-202ENST00000409478 KIF27Q86VH2 1401 aa7.82□□□□□ -1.16
R3HDM1-202ENST00000409478 CFAP43Q8NDM7 1665 aa7.81□□□□□ -1.16
R3HDM1-202ENST00000409478 FAM43AQ8N2R8 423 aa7.81□□□□□ -1.16
R3HDM1-202ENST00000409478 MS4A1P11836 297 aa7.81□□□□□ -1.16
R3HDM1-202ENST00000409478 AKNAQ7Z591 1439 aa7.81□□□□□ -1.16
R3HDM1-202ENST00000409478 HSPA5P11021 654 aaKnown RBP7.8□□□□□ -1.16
R3HDM1-202ENST00000409478 EIF4G2P78344 907 aaKnown RBP eCLIP7.8□□□□□ -1.161e-6■■□□□ 14.4
R3HDM1-202ENST00000409478 CCDC184Q52MB2 194 aa7.8□□□□□ -1.16
R3HDM1-202ENST00000409478 NPM2Q86SE8 214 aaKnown RBP7.8□□□□□ -1.16
R3HDM1-202ENST00000409478 CCDC18Q5T9S5 1454 aa7.8□□□□□ -1.16
R3HDM1-202ENST00000409478 KDM5BQ9UGL1 1544 aa7.8□□□□□ -1.16
R3HDM1-202ENST00000409478 PDE4AP27815 886 aa7.79□□□□□ -1.16
R3HDM1-202ENST00000409478 NCOA1Q15788 1441 aa7.78□□□□□ -1.16
R3HDM1-202ENST00000409478 HFM1A2PYH4 1435 aa7.78□□□□□ -1.16
R3HDM1-202ENST00000409478 BACH2Q9BYV9 841 aa7.78□□□□□ -1.16
R3HDM1-202ENST00000409478 CCDC7Q96M83 1385 aa7.77□□□□□ -1.16
R3HDM1-202ENST00000409478 ATAD2BQ9ULI0 1458 aa7.77□□□□□ -1.17
R3HDM1-202ENST00000409478 ABCA5Q8WWZ7 1642 aa7.76□□□□□ -1.17
R3HDM1-202ENST00000409478 FRAT1Q92837 279 aaPredicted RBP7.76□□□□□ -1.17
R3HDM1-202ENST00000409478 NFKBIBQ15653 356 aa7.76□□□□□ -1.17
R3HDM1-202ENST00000409478 PTPN23Q9H3S7 1636 aa7.76□□□□□ -1.17
R3HDM1-202ENST00000409478 DAXXQ9UER7 740 aaPredicted RBP7.74□□□□□ -1.17
R3HDM1-202ENST00000409478 FMN1Q68DA7 1419 aa7.73□□□□□ -1.17
R3HDM1-202ENST00000409478 POLR1AO95602 1720 aaPredicted RBP7.73□□□□□ -1.17
R3HDM1-202ENST00000409478 FGD6Q6ZV73 1430 aa7.73□□□□□ -1.17
R3HDM1-202ENST00000409478 PCF11O94913 1555 aaKnown RBP7.73□□□□□ -1.17
R3HDM1-202ENST00000409478 FYCO1Q9BQS8 1478 aa7.72□□□□□ -1.17
R3HDM1-202ENST00000409478 RRP1P56182 461 aaKnown RBP7.72□□□□□ -1.17
R3HDM1-202ENST00000409478 NAIPQ13075 1403 aa7.71□□□□□ -1.18
R3HDM1-202ENST00000409478 CUX1P39880 1505 aa7.71□□□□□ -1.18
R3HDM1-202ENST00000409478 AQRO60306 1485 aaKnown RBP eCLIP7.7□□□□□ -1.18
R3HDM1-202ENST00000409478 HECW1Q76N89 1606 aa7.7□□□□□ -1.18
R3HDM1-202ENST00000409478 KIF7Q2M1P5 1343 aa7.69□□□□□ -1.18
R3HDM1-202ENST00000409478 CC2D2AQ9P2K1 1620 aa7.69□□□□□ -1.18
R3HDM1-202ENST00000409478 EXOC6Q8TAG9 804 aa7.69□□□□□ -1.18
R3HDM1-202ENST00000409478 ZMYND15Q9H091 742 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms